data_5GIY # _model_server_result.job_id NpcYt0ExEHGMa8A22w84fQ _model_server_result.datetime_utc '2024-11-07 13:07:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5giy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1003}' # _entry.id 5GIY # _exptl.entry_id 5GIY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.12 _cell.angle_gamma 90 _cell.entry_id 5GIY _cell.length_a 185.845 _cell.length_b 38.71 _cell.length_c 96.07 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GIY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 53 1_555 A SG CYS 60 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 73 A CYS 75 1_555 A SG CYS 89 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 88 A CYS 90 1_555 A SG CYS 99 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 122 A CYS 124 1_555 A SG CYS 167 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 166 A CYS 168 1_555 A SG CYS 175 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 198 A CYS 200 1_555 A SG CYS 244 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 A SG CYS 243 A CYS 245 1_555 A SG CYS 251 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 A SG CYS 263 A CYS 265 1_555 A SG CYS 277 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 A SG CYS 276 A CYS 278 1_555 A SG CYS 287 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 A SG CYS 314 A CYS 316 1_555 A SG CYS 359 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 A SG CYS 358 A CYS 360 1_555 A SG CYS 367 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 A SG CYS 390 A CYS 392 1_555 A SG CYS 436 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf13 A SG CYS 435 A CYS 437 1_555 A SG CYS 446 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 A SG CYS 459 A CYS 461 1_555 A SG CYS 475 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 A SG CYS 474 A CYS 476 1_555 A SG CYS 485 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf16 A SG CYS 512 A CYS 514 1_555 A SG CYS 557 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf17 A SG CYS 556 A CYS 558 1_555 A SG CYS 565 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A NH2 ARG 346 A ARG 348 1_555 D O1 PLM . A PLM 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? covale ? covale2 A NZ LYS 349 A LYS 351 1_555 G O1 PLM . A PLM 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale3 A CB CYS 358 A CYS 360 1_555 A SG CYS 367 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.579 ? covale ? covale4 A SG CYS 358 A CYS 360 1_555 A CB CYS 367 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc1 A NE2 HIS 144 A HIS 146 1_555 H RU2 7GE . A 7GE 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.792 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 282 n n C1 O2 PLM doub 283 n n C1 C2 PLM sing 284 n n O1 H PLM sing 285 n n C2 C3 PLM sing 286 n n C2 H21 PLM sing 287 n n C2 H22 PLM sing 288 n n C3 C4 PLM sing 289 n n C3 H31 PLM sing 290 n n C3 H32 PLM sing 291 n n C4 C5 PLM sing 292 n n C4 H41 PLM sing 293 n n C4 H42 PLM sing 294 n n C5 C6 PLM sing 295 n n C5 H51 PLM sing 296 n n C5 H52 PLM sing 297 n n C6 C7 PLM sing 298 n n C6 H61 PLM sing 299 n n C6 H62 PLM sing 300 n n C7 C8 PLM sing 301 n n C7 H71 PLM sing 302 n n C7 H72 PLM sing 303 n n C8 C9 PLM sing 304 n n C8 H81 PLM sing 305 n n C8 H82 PLM sing 306 n n C9 CA PLM sing 307 n n C9 H91 PLM sing 308 n n C9 H92 PLM sing 309 n n CA CB PLM sing 310 n n CA HA1 PLM sing 311 n n CA HA2 PLM sing 312 n n CB CC PLM sing 313 n n CB HB1 PLM sing 314 n n CB HB2 PLM sing 315 n n CC CD PLM sing 316 n n CC HC1 PLM sing 317 n n CC HC2 PLM sing 318 n n CD CE PLM sing 319 n n CD HD1 PLM sing 320 n n CD HD2 PLM sing 321 n n CE CF PLM sing 322 n n CE HE1 PLM sing 323 n n CE HE2 PLM sing 324 n n CF CG PLM sing 325 n n CF HF1 PLM sing 326 n n CF HF2 PLM sing 327 n n CG HG1 PLM sing 328 n n CG HG2 PLM sing 329 n n CG HG3 PLM sing 330 n n # _atom_sites.entry_id 5GIY _atom_sites.fract_transf_matrix[1][1] 0.005381 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001454 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010782 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLM A 1 1001 1001 PLM PLM . C 2 PLM A 1 1002 1002 PLM PLM . D 2 PLM A 1 1003 1003 PLM PLM . E 2 PLM A 1 1004 1004 PLM PLM . F 2 PLM A 1 1005 1005 PLM PLM . G 2 PLM A 1 1006 1006 PLM PLM . H 3 7GE A 1 1007 1 7GE LIG . I 3 7GE A 1 1008 1 7GE SEM . J 4 HOH A 1 1101 5 HOH HOH . J 4 HOH A 2 1102 4 HOH HOH . J 4 HOH A 3 1103 1 HOH HOH . J 4 HOH A 4 1104 6 HOH HOH . J 4 HOH A 5 1105 2 HOH HOH . J 4 HOH A 6 1106 7 HOH HOH . J 4 HOH A 7 1107 8 HOH HOH . J 4 HOH A 8 1108 9 HOH HOH . J 4 HOH A 9 1109 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . D 2 12.906 -0.106 9.482 1 69.4 ? C1 PLM 1003 A 1 HETATM 2 O O1 PLM . . . D 2 12.835 -1.328 9.188 1 86.06 ? O1 PLM 1003 A 1 HETATM 3 O O2 PLM . . . D 2 12.571 0.767 8.645 1 65.49 ? O2 PLM 1003 A 1 HETATM 4 C C2 PLM . . . D 2 13.378 0.346 10.84 1 58.84 ? C2 PLM 1003 A 1 HETATM 5 C C3 PLM . . . D 2 12.473 1.41 11.414 1 60.44 ? C3 PLM 1003 A 1 HETATM 6 C C4 PLM . . . D 2 11.908 1.01 12.754 1 58.28 ? C4 PLM 1003 A 1 HETATM 7 C C5 PLM . . . D 2 10.667 1.804 13.084 1 55.84 ? C5 PLM 1003 A 1 HETATM 8 C C6 PLM . . . D 2 10.276 1.593 14.526 1 62.59 ? C6 PLM 1003 A 1 HETATM 9 C C7 PLM . . . D 2 8.875 2.066 14.824 1 71.54 ? C7 PLM 1003 A 1 HETATM 10 C C8 PLM . . . D 2 8.319 1.406 16.067 1 73.99 ? C8 PLM 1003 A 1 HETATM 11 C C9 PLM . . . D 2 9.041 1.826 17.331 1 78.9 ? C9 PLM 1003 A 1 HETATM 12 C CA PLM . . . D 2 8.491 1.132 18.56 1 81.35 ? CA PLM 1003 A 1 HETATM 13 C CB PLM . . . D 2 9.069 1.673 19.849 1 79.85 ? CB PLM 1003 A 1 HETATM 14 C CC PLM . . . D 2 8.794 3.15 20.016 1 74.67 ? CC PLM 1003 A 1 HETATM 15 C CD PLM . . . D 2 9.982 3.985 19.594 1 73.39 ? CD PLM 1003 A 1 HETATM 16 C CE PLM . . . D 2 9.565 5.31 18.999 1 74.87 ? CE PLM 1003 A 1 HETATM 17 C CF PLM . . . D 2 10.489 5.742 17.883 1 75.36 ? CF PLM 1003 A 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #