data_5GIY # _model_server_result.job_id EQbELhKZGLB4oN00I1MrHg _model_server_result.datetime_utc '2025-06-29 01:26:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5giy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1007}' # _entry.id 5GIY # _exptl.entry_id 5GIY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 396.471 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description pentakis(chloranyl)-(1~{H}-indazol-2-ium-2-yl)ruthenium(1-) _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.12 _cell.angle_gamma 90 _cell.entry_id 5GIY _cell.length_a 185.845 _cell.length_b 38.71 _cell.length_c 96.07 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GIY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 53 1_555 A SG CYS 60 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 73 A CYS 75 1_555 A SG CYS 89 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 88 A CYS 90 1_555 A SG CYS 99 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 122 A CYS 124 1_555 A SG CYS 167 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 166 A CYS 168 1_555 A SG CYS 175 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 198 A CYS 200 1_555 A SG CYS 244 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 A SG CYS 243 A CYS 245 1_555 A SG CYS 251 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 A SG CYS 263 A CYS 265 1_555 A SG CYS 277 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 A SG CYS 276 A CYS 278 1_555 A SG CYS 287 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 A SG CYS 314 A CYS 316 1_555 A SG CYS 359 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 A SG CYS 358 A CYS 360 1_555 A SG CYS 367 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 A SG CYS 390 A CYS 392 1_555 A SG CYS 436 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf13 A SG CYS 435 A CYS 437 1_555 A SG CYS 446 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 A SG CYS 459 A CYS 461 1_555 A SG CYS 475 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 A SG CYS 474 A CYS 476 1_555 A SG CYS 485 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf16 A SG CYS 512 A CYS 514 1_555 A SG CYS 557 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf17 A SG CYS 556 A CYS 558 1_555 A SG CYS 565 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A NH2 ARG 346 A ARG 348 1_555 D O1 PLM . A PLM 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? covale ? covale2 A NZ LYS 349 A LYS 351 1_555 G O1 PLM . A PLM 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale3 A CB CYS 358 A CYS 360 1_555 A SG CYS 367 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.579 ? covale ? covale4 A SG CYS 358 A CYS 360 1_555 A CB CYS 367 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc1 A NE2 HIS 144 A HIS 146 1_555 H RU2 7GE . A 7GE 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.792 ? # _chem_comp.formula 'C7 H6 Cl5 N2 Ru' _chem_comp.formula_weight 396.471 _chem_comp.id 7GE _chem_comp.mon_nstd_flag . _chem_comp.name pentakis(chloranyl)-(1~{H}-indazol-2-ium-2-yl)ruthenium(1-) _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C09 7GE doub 1 n y C10 C11 7GE sing 2 n y C13 C08 7GE doub 3 n y C13 C12 7GE sing 4 n y C13 N14 7GE sing 5 n y RU2 N06 7GE sing 6 n n N06 C07 7GE doub 7 n y N06 N14 7GE sing 8 n y C07 C08 7GE sing 9 n y C08 C09 7GE sing 10 n y C11 C12 7GE doub 11 n y RU2 CL5 7GE sing 12 n n C10 H11 7GE sing 13 n n C09 H91 7GE sing 14 n n C11 H31 7GE sing 15 n n C12 H21 7GE sing 16 n n RU2 CL3 7GE sing 17 n n RU2 CL4 7GE sing 18 n n RU2 CL1 7GE sing 19 n n RU2 CL2 7GE sing 20 n n C07 H1 7GE sing 21 n n N14 H2 7GE sing 22 n n # _atom_sites.entry_id 5GIY _atom_sites.fract_transf_matrix[1][1] 0.005381 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001454 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010782 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLM A 1 1001 1001 PLM PLM . C 2 PLM A 1 1002 1002 PLM PLM . D 2 PLM A 1 1003 1003 PLM PLM . E 2 PLM A 1 1004 1004 PLM PLM . F 2 PLM A 1 1005 1005 PLM PLM . G 2 PLM A 1 1006 1006 PLM PLM . H 3 7GE A 1 1007 1 7GE LIG . I 3 7GE A 1 1008 1 7GE SEM . J 4 HOH A 1 1101 5 HOH HOH . J 4 HOH A 2 1102 4 HOH HOH . J 4 HOH A 3 1103 1 HOH HOH . J 4 HOH A 4 1104 6 HOH HOH . J 4 HOH A 5 1105 2 HOH HOH . J 4 HOH A 6 1106 7 HOH HOH . J 4 HOH A 7 1107 8 HOH HOH . J 4 HOH A 8 1108 9 HOH HOH . J 4 HOH A 9 1109 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 7GE . . . H 3 31.399 2.233 30.212 1 97.54 ? C10 7GE 1007 A 1 HETATM 2 C C13 7GE . . . H 3 30.985 -0.245 29.337 1 98.96 ? C13 7GE 1007 A 1 HETATM 3 CL CL1 7GE . . . H 3 31.214 -3.828 32.508 1 141.91 ? CL1 7GE 1007 A 1 HETATM 4 RU RU2 7GE . . . H 3 29.753 -3.688 30.278 1 110.03 ? RU2 7GE 1007 A 1 HETATM 5 CL CL3 7GE . . . H 3 27.351 -2.768 31.113 1 182.24 ? CL3 7GE 1007 A 1 HETATM 6 CL CL4 7GE . . . H 3 29.705 -3.833 27.628 1 108.4 ? CL4 7GE 1007 A 1 HETATM 7 CL CL5 7GE . . . H 3 29.844 -6.375 30.279 1 136.38 ? CL5 7GE 1007 A 1 HETATM 8 N N06 7GE . . . H 3 31.101 -2.048 30.018 1 93.17 ? N06 7GE 1007 A 1 HETATM 9 C C07 7GE . . . H 3 30.665 -1.391 30.867 1 96.19 ? C07 7GE 1007 A 1 HETATM 10 C C08 7GE . . . H 3 30.911 -0.133 30.319 1 96.63 ? C08 7GE 1007 A 1 HETATM 11 C C09 7GE . . . H 3 31.135 1.2 30.954 1 95.37 ? C09 7GE 1007 A 1 HETATM 12 C C11 7GE . . . H 3 31.483 2.106 29.018 1 103.7 ? C11 7GE 1007 A 1 HETATM 13 C C12 7GE . . . H 3 31.302 0.939 28.479 1 103.11 ? C12 7GE 1007 A 1 HETATM 14 N N14 7GE . . . H 3 30.761 -1.571 29.046 1 97.51 ? N14 7GE 1007 A 1 HETATM 15 H H11 7GE . . . H 3 31.536 3.115 30.617 1 117.05 ? H11 7GE 1007 A 1 HETATM 16 H H91 7GE . . . H 3 31.072 1.294 31.927 1 114.45 ? H91 7GE 1007 A 1 HETATM 17 H H31 7GE . . . H 3 31.676 2.884 28.455 1 124.44 ? H31 7GE 1007 A 1 HETATM 18 H H21 7GE . . . H 3 31.359 0.836 27.508 1 123.73 ? H21 7GE 1007 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #