data_5GJC
#
_model_server_result.job_id            xstqCwFrGYZJONLuc0Zl7A 
_model_server_result.datetime_utc      '2024-11-25 19:32:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gjc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":702}' 
#
_entry.id    5GJC 
#
_exptl.entry_id    5GJC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.21 
_cell.angle_gamma         90 
_cell.entry_id            5GJC 
_cell.length_a            51.595 
_cell.length_b            74.167 
_cell.length_c            57.74 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GJC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 26 A THR 201 1_555 B MN MN . A MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc2 A OE2 GLU 111 A GLU 286 1_555 B MN MN . A MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc3 B MN MN . A MN 701 1_555 C O3G ATP . A ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc4 B MN MN . A MN 701 1_555 C O2B ATP . A ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? 
metalc ? metalc5 B MN MN . A MN 701 1_555 D O HOH . A HOH 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc6 B MN MN . A MN 701 1_555 D O HOH . A HOH 831 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     5GJC 
_atom_sites.fract_transf_matrix[1][1]    0.019382 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000747 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013483 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017332 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 701 1619 MN MN . 
C 3 ATP A 1 702 1620 ATP ATP . 
D 4 HOH A 1 801 66 HOH HOH . 
D 4 HOH A 2 802 65 HOH HOH . 
D 4 HOH A 3 803 104 HOH HOH . 
D 4 HOH A 4 804 70 HOH HOH . 
D 4 HOH A 5 805 59 HOH HOH . 
D 4 HOH A 6 806 72 HOH HOH . 
D 4 HOH A 7 807 3 HOH HOH . 
D 4 HOH A 8 808 90 HOH HOH . 
D 4 HOH A 9 809 67 HOH HOH . 
D 4 HOH A 10 810 58 HOH HOH . 
D 4 HOH A 11 811 18 HOH HOH . 
D 4 HOH A 12 812 50 HOH HOH . 
D 4 HOH A 13 813 56 HOH HOH . 
D 4 HOH A 14 814 49 HOH HOH . 
D 4 HOH A 15 815 61 HOH HOH . 
D 4 HOH A 16 816 9 HOH HOH . 
D 4 HOH A 17 817 103 HOH HOH . 
D 4 HOH A 18 818 46 HOH HOH . 
D 4 HOH A 19 819 77 HOH HOH . 
D 4 HOH A 20 820 28 HOH HOH . 
D 4 HOH A 21 821 96 HOH HOH . 
D 4 HOH A 22 822 36 HOH HOH . 
D 4 HOH A 23 823 75 HOH HOH . 
D 4 HOH A 24 824 2 HOH HOH . 
D 4 HOH A 25 825 10 HOH HOH . 
D 4 HOH A 26 826 20 HOH HOH . 
D 4 HOH A 27 827 41 HOH HOH . 
D 4 HOH A 28 828 6 HOH HOH . 
D 4 HOH A 29 829 7 HOH HOH . 
D 4 HOH A 30 830 37 HOH HOH . 
D 4 HOH A 31 831 1 HOH HOH . 
D 4 HOH A 32 832 38 HOH HOH . 
D 4 HOH A 33 833 52 HOH HOH . 
D 4 HOH A 34 834 54 HOH HOH . 
D 4 HOH A 35 835 62 HOH HOH . 
D 4 HOH A 36 836 42 HOH HOH . 
D 4 HOH A 37 837 55 HOH HOH . 
D 4 HOH A 38 838 13 HOH HOH . 
D 4 HOH A 39 839 17 HOH HOH . 
D 4 HOH A 40 840 26 HOH HOH . 
D 4 HOH A 41 841 47 HOH HOH . 
D 4 HOH A 42 842 98 HOH HOH . 
D 4 HOH A 43 843 45 HOH HOH . 
D 4 HOH A 44 844 84 HOH HOH . 
D 4 HOH A 45 845 74 HOH HOH . 
D 4 HOH A 46 846 4 HOH HOH . 
D 4 HOH A 47 847 35 HOH HOH . 
D 4 HOH A 48 848 88 HOH HOH . 
D 4 HOH A 49 849 91 HOH HOH . 
D 4 HOH A 50 850 48 HOH HOH . 
D 4 HOH A 51 851 32 HOH HOH . 
D 4 HOH A 52 852 64 HOH HOH . 
D 4 HOH A 53 853 60 HOH HOH . 
D 4 HOH A 54 854 81 HOH HOH . 
D 4 HOH A 55 855 93 HOH HOH . 
D 4 HOH A 56 856 89 HOH HOH . 
D 4 HOH A 57 857 29 HOH HOH . 
D 4 HOH A 58 858 68 HOH HOH . 
D 4 HOH A 59 859 40 HOH HOH . 
D 4 HOH A 60 860 76 HOH HOH . 
D 4 HOH A 61 861 22 HOH HOH . 
D 4 HOH A 62 862 57 HOH HOH . 
D 4 HOH A 63 863 105 HOH HOH . 
D 4 HOH A 64 864 27 HOH HOH . 
D 4 HOH A 65 865 12 HOH HOH . 
D 4 HOH A 66 866 8 HOH HOH . 
D 4 HOH A 67 867 92 HOH HOH . 
D 4 HOH A 68 868 19 HOH HOH . 
D 4 HOH A 69 869 33 HOH HOH . 
D 4 HOH A 70 870 23 HOH HOH . 
D 4 HOH A 71 871 69 HOH HOH . 
D 4 HOH A 72 872 16 HOH HOH . 
D 4 HOH A 73 873 51 HOH HOH . 
D 4 HOH A 74 874 44 HOH HOH . 
D 4 HOH A 75 875 80 HOH HOH . 
D 4 HOH A 76 876 94 HOH HOH . 
D 4 HOH A 77 877 43 HOH HOH . 
D 4 HOH A 78 878 34 HOH HOH . 
D 4 HOH A 79 879 82 HOH HOH . 
D 4 HOH A 80 880 15 HOH HOH . 
D 4 HOH A 81 881 100 HOH HOH . 
D 4 HOH A 82 882 71 HOH HOH . 
D 4 HOH A 83 883 87 HOH HOH . 
D 4 HOH A 84 884 106 HOH HOH . 
D 4 HOH A 85 885 39 HOH HOH . 
D 4 HOH A 86 886 63 HOH HOH . 
D 4 HOH A 87 887 97 HOH HOH . 
D 4 HOH A 88 888 99 HOH HOH . 
D 4 HOH A 89 889 85 HOH HOH . 
D 4 HOH A 90 890 31 HOH HOH . 
D 4 HOH A 91 891 53 HOH HOH . 
D 4 HOH A 92 892 5 HOH HOH . 
D 4 HOH A 93 893 14 HOH HOH . 
D 4 HOH A 94 894 21 HOH HOH . 
D 4 HOH A 95 895 73 HOH HOH . 
D 4 HOH A 96 896 83 HOH HOH . 
D 4 HOH A 97 897 30 HOH HOH . 
D 4 HOH A 98 898 25 HOH HOH . 
D 4 HOH A 99 899 79 HOH HOH . 
D 4 HOH A 100 900 11 HOH HOH . 
D 4 HOH A 101 901 107 HOH HOH . 
D 4 HOH A 102 902 78 HOH HOH . 
D 4 HOH A 103 903 95 HOH HOH . 
D 4 HOH A 104 904 24 HOH HOH . 
D 4 HOH A 105 905 101 HOH HOH . 
D 4 HOH A 106 906 86 HOH HOH . 
D 4 HOH A 107 907 102 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . C 3 4.349 14.935 7.465 1 81.82 ? PG ATP 702 A 1 
HETATM 2 O O1G ATP . . . C 3 5.227 13.72 7.274 1 72.05 ? O1G ATP 702 A 1 
HETATM 3 O O2G ATP . . . C 3 2.992 14.623 8.048 1 73.68 ? O2G ATP 702 A 1 
HETATM 4 O O3G ATP . . . C 3 5.056 16.105 8.106 1 78.33 ? O3G ATP 702 A 1 
HETATM 5 P PB ATP . . . C 3 3.126 16.717 5.603 1 50.77 ? PB ATP 702 A 1 
HETATM 6 O O1B ATP . . . C 3 1.68 16.286 5.569 1 48.87 ? O1B ATP 702 A 1 
HETATM 7 O O2B ATP . . . C 3 3.551 17.886 6.458 1 55.47 ? O2B ATP 702 A 1 
HETATM 8 O O3B ATP . . . C 3 4.034 15.426 5.96 1 78.88 ? O3B ATP 702 A 1 
HETATM 9 P PA ATP . . . C 3 4.336 18.312 3.608 1 81.74 ? PA ATP 702 A 1 
HETATM 10 O O1A ATP . . . C 3 3.311 19.415 3.517 1 67.61 ? O1A ATP 702 A 1 
HETATM 11 O O2A ATP . . . C 3 5.585 18.505 4.436 1 77.3 ? O2A ATP 702 A 1 
HETATM 12 O O3A ATP . . . C 3 3.6 16.964 4.087 1 58.21 ? O3A ATP 702 A 1 
HETATM 13 O O5' ATP . . . C 3 4.773 17.842 2.132 1 75.54 ? O5' ATP 702 A 1 
HETATM 14 C C5' ATP . . . C 3 3.855 17.817 1.04 1 76.56 ? C5' ATP 702 A 1 
HETATM 15 C C4' ATP . . . C 3 4.548 17.163 -0.149 1 79.48 ? C4' ATP 702 A 1 
HETATM 16 O O4' ATP . . . C 3 4.855 18.167 -1.116 1 93.44 ? O4' ATP 702 A 1 
HETATM 17 C C3' ATP . . . C 3 5.859 16.522 0.266 1 74.02 ? C3' ATP 702 A 1 
HETATM 18 O O3' ATP . . . C 3 6.017 15.291 -0.44 1 84.18 ? O3' ATP 702 A 1 
HETATM 19 C C2' ATP . . . C 3 6.932 17.5 -0.168 1 91.35 ? C2' ATP 702 A 1 
HETATM 20 O O2' ATP . . . C 3 8.078 16.795 -0.656 1 84.15 ? O2' ATP 702 A 1 
HETATM 21 C C1' ATP . . . C 3 6.267 18.346 -1.247 1 86.95 ? C1' ATP 702 A 1 
HETATM 22 N N9 ATP . . . C 3 6.604 19.782 -1.069 1 103.13 ? N9 ATP 702 A 1 
HETATM 23 C C8 ATP . . . C 3 7.839 20.281 -0.873 1 100.76 ? C8 ATP 702 A 1 
HETATM 24 N N7 ATP . . . C 3 7.811 21.633 -0.756 1 101.58 ? N7 ATP 702 A 1 
HETATM 25 C C5 ATP . . . C 3 6.53 22.022 -0.886 1 104.37 ? C5 ATP 702 A 1 
HETATM 26 C C6 ATP . . . C 3 5.8 23.312 -0.864 1 102.59 ? C6 ATP 702 A 1 
HETATM 27 N N6 ATP . . . C 3 6.453 24.482 -0.676 1 96.7 ? N6 ATP 702 A 1 
HETATM 28 N N1 ATP . . . C 3 4.461 23.286 -1.037 1 107.23 ? N1 ATP 702 A 1 
HETATM 29 C C2 ATP . . . C 3 3.801 22.132 -1.223 1 99.16 ? C2 ATP 702 A 1 
HETATM 30 N N3 ATP . . . C 3 4.396 20.928 -1.256 1 95.17 ? N3 ATP 702 A 1 
HETATM 31 C C4 ATP . . . C 3 5.736 20.802 -1.098 1 104.78 ? C4 ATP 702 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#