data_5GJK # _model_server_result.job_id hwTIdM_d6cdXGwwhcwl77Q _model_server_result.datetime_utc '2024-11-04 20:35:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gjk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":604}' # _entry.id 5GJK # _exptl.entry_id 5GJK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5GJK _cell.length_a 80.518 _cell.length_b 80.518 _cell.length_c 200.952 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GJK _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_555 -x+y,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 273 n n P O2 PO4 sing 274 n n P O3 PO4 sing 275 n n P O4 PO4 sing 276 n n # _atom_sites.entry_id 5GJK _atom_sites.fract_transf_matrix[1][1] 0.01242 _atom_sites.fract_transf_matrix[1][2] 0.00717 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014341 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004976 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 601 1 GOL GOL . D 3 GOL A 1 602 2 GOL GOL . E 3 GOL A 1 603 3 GOL GOL . F 4 PO4 A 1 604 1 PO4 PO4 . G 5 HOH A 1 701 38 HOH HOH . G 5 HOH A 2 702 102 HOH HOH . G 5 HOH A 3 703 42 HOH HOH . G 5 HOH A 4 704 24 HOH HOH . G 5 HOH A 5 705 68 HOH HOH . G 5 HOH A 6 706 62 HOH HOH . G 5 HOH A 7 707 61 HOH HOH . G 5 HOH A 8 708 7 HOH HOH . G 5 HOH A 9 709 63 HOH HOH . G 5 HOH A 10 710 69 HOH HOH . G 5 HOH A 11 711 105 HOH HOH . G 5 HOH A 12 712 5 HOH HOH . G 5 HOH A 13 713 36 HOH HOH . G 5 HOH A 14 714 52 HOH HOH . G 5 HOH A 15 715 4 HOH HOH . G 5 HOH A 16 716 10 HOH HOH . G 5 HOH A 17 717 17 HOH HOH . G 5 HOH A 18 718 19 HOH HOH . G 5 HOH A 19 719 84 HOH HOH . G 5 HOH A 20 720 1 HOH HOH . G 5 HOH A 21 721 35 HOH HOH . G 5 HOH A 22 722 25 HOH HOH . G 5 HOH A 23 723 70 HOH HOH . G 5 HOH A 24 724 2 HOH HOH . G 5 HOH A 25 725 9 HOH HOH . G 5 HOH A 26 726 11 HOH HOH . G 5 HOH A 27 727 13 HOH HOH . G 5 HOH A 28 728 86 HOH HOH . G 5 HOH A 29 729 72 HOH HOH . G 5 HOH A 30 730 71 HOH HOH . G 5 HOH A 31 731 3 HOH HOH . G 5 HOH A 32 732 34 HOH HOH . G 5 HOH A 33 733 32 HOH HOH . G 5 HOH A 34 734 58 HOH HOH . G 5 HOH A 35 735 53 HOH HOH . G 5 HOH A 36 736 37 HOH HOH . G 5 HOH A 37 737 27 HOH HOH . G 5 HOH A 38 738 26 HOH HOH . G 5 HOH A 39 739 8 HOH HOH . G 5 HOH A 40 740 55 HOH HOH . G 5 HOH A 41 741 47 HOH HOH . G 5 HOH A 42 742 44 HOH HOH . G 5 HOH A 43 743 39 HOH HOH . G 5 HOH A 44 744 96 HOH HOH . G 5 HOH A 45 745 45 HOH HOH . G 5 HOH A 46 746 22 HOH HOH . G 5 HOH A 47 747 29 HOH HOH . G 5 HOH A 48 748 14 HOH HOH . G 5 HOH A 49 749 107 HOH HOH . G 5 HOH A 50 750 20 HOH HOH . G 5 HOH A 51 751 65 HOH HOH . G 5 HOH A 52 752 43 HOH HOH . G 5 HOH A 53 753 16 HOH HOH . G 5 HOH A 54 754 46 HOH HOH . G 5 HOH A 55 755 23 HOH HOH . G 5 HOH A 56 756 111 HOH HOH . G 5 HOH A 57 757 95 HOH HOH . G 5 HOH A 58 758 12 HOH HOH . G 5 HOH A 59 759 103 HOH HOH . G 5 HOH A 60 760 18 HOH HOH . G 5 HOH A 61 761 90 HOH HOH . G 5 HOH A 62 762 106 HOH HOH . G 5 HOH A 63 763 83 HOH HOH . G 5 HOH A 64 764 110 HOH HOH . G 5 HOH A 65 765 108 HOH HOH . H 5 HOH B 1 301 59 HOH HOH . H 5 HOH B 2 302 64 HOH HOH . H 5 HOH B 3 303 76 HOH HOH . H 5 HOH B 4 304 48 HOH HOH . H 5 HOH B 5 305 31 HOH HOH . H 5 HOH B 6 306 78 HOH HOH . H 5 HOH B 7 307 56 HOH HOH . H 5 HOH B 8 308 15 HOH HOH . H 5 HOH B 9 309 109 HOH HOH . H 5 HOH B 10 310 94 HOH HOH . H 5 HOH B 11 311 85 HOH HOH . H 5 HOH B 12 312 73 HOH HOH . H 5 HOH B 13 313 41 HOH HOH . H 5 HOH B 14 314 21 HOH HOH . H 5 HOH B 15 315 57 HOH HOH . H 5 HOH B 16 316 79 HOH HOH . H 5 HOH B 17 317 33 HOH HOH . H 5 HOH B 18 318 60 HOH HOH . H 5 HOH B 19 319 101 HOH HOH . H 5 HOH B 20 320 6 HOH HOH . H 5 HOH B 21 321 54 HOH HOH . H 5 HOH B 22 322 80 HOH HOH . H 5 HOH B 23 323 50 HOH HOH . H 5 HOH B 24 324 88 HOH HOH . H 5 HOH B 25 325 75 HOH HOH . H 5 HOH B 26 326 28 HOH HOH . H 5 HOH B 27 327 87 HOH HOH . H 5 HOH B 28 328 104 HOH HOH . H 5 HOH B 29 329 74 HOH HOH . H 5 HOH B 30 330 67 HOH HOH . H 5 HOH B 31 331 40 HOH HOH . H 5 HOH B 32 332 81 HOH HOH . H 5 HOH B 33 333 98 HOH HOH . H 5 HOH B 34 334 92 HOH HOH . H 5 HOH B 35 335 99 HOH HOH . H 5 HOH B 36 336 66 HOH HOH . H 5 HOH B 37 337 82 HOH HOH . H 5 HOH B 38 338 97 HOH HOH . H 5 HOH B 39 339 77 HOH HOH . H 5 HOH B 40 340 93 HOH HOH . H 5 HOH B 41 341 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . F 4 -0.435 -44.712 15.917 1 93.33 ? P PO4 604 A 1 HETATM 2 O O1 PO4 . . . F 4 -0.767 -45.501 14.666 1 68.81 ? O1 PO4 604 A 1 HETATM 3 O O2 PO4 . . . F 4 -1.662 -44.652 16.806 1 85.24 ? O2 PO4 604 A 1 HETATM 4 O O3 PO4 . . . F 4 -0.017 -43.3 15.547 1 70.4 ? O3 PO4 604 A 1 HETATM 5 O O4 PO4 . . . F 4 0.704 -45.382 16.664 1 72.14 ? O4 PO4 604 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #