data_5GJN # _model_server_result.job_id ynXzyhFK079fVzhCTUZw6w _model_server_result.datetime_utc '2024-12-03 11:33:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gjn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5GJN # _exptl.entry_id 5GJN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5GJN _cell.length_a 105.966 _cell.length_b 105.966 _cell.length_c 73.634 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GJN _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 166 n n C1 C2 GOL sing 167 n n C1 H11 GOL sing 168 n n C1 H12 GOL sing 169 n n O1 HO1 GOL sing 170 n n C2 O2 GOL sing 171 n n C2 C3 GOL sing 172 n n C2 H2 GOL sing 173 n n O2 HO2 GOL sing 174 n n C3 O3 GOL sing 175 n n C3 H31 GOL sing 176 n n C3 H32 GOL sing 177 n n O3 HO3 GOL sing 178 n n # _atom_sites.entry_id 5GJN _atom_sites.fract_transf_matrix[1][1] 0.009437 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009437 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013581 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 2 GOL GOL . C 2 GOL A 1 402 5 GOL GOL . D 3 MG A 1 403 2 MG MG . E 3 MG A 1 404 3 MG MG . F 4 1PE A 1 405 1 1PE 1PE . G 5 PGE A 1 406 1 PGE PGE . H 6 HOH A 1 501 160 HOH HOH . H 6 HOH A 2 502 98 HOH HOH . H 6 HOH A 3 503 57 HOH HOH . H 6 HOH A 4 504 199 HOH HOH . H 6 HOH A 5 505 32 HOH HOH . H 6 HOH A 6 506 22 HOH HOH . H 6 HOH A 7 507 95 HOH HOH . H 6 HOH A 8 508 11 HOH HOH . H 6 HOH A 9 509 96 HOH HOH . H 6 HOH A 10 510 27 HOH HOH . H 6 HOH A 11 511 206 HOH HOH . H 6 HOH A 12 512 245 HOH HOH . H 6 HOH A 13 513 116 HOH HOH . H 6 HOH A 14 514 16 HOH HOH . H 6 HOH A 15 515 13 HOH HOH . H 6 HOH A 16 516 231 HOH HOH . H 6 HOH A 17 517 179 HOH HOH . H 6 HOH A 18 518 158 HOH HOH . H 6 HOH A 19 519 51 HOH HOH . H 6 HOH A 20 520 8 HOH HOH . H 6 HOH A 21 521 84 HOH HOH . H 6 HOH A 22 522 135 HOH HOH . H 6 HOH A 23 523 67 HOH HOH . H 6 HOH A 24 524 214 HOH HOH . H 6 HOH A 25 525 66 HOH HOH . H 6 HOH A 26 526 100 HOH HOH . H 6 HOH A 27 527 156 HOH HOH . H 6 HOH A 28 528 20 HOH HOH . H 6 HOH A 29 529 80 HOH HOH . H 6 HOH A 30 530 70 HOH HOH . H 6 HOH A 31 531 71 HOH HOH . H 6 HOH A 32 532 204 HOH HOH . H 6 HOH A 33 533 60 HOH HOH . H 6 HOH A 34 534 170 HOH HOH . H 6 HOH A 35 535 210 HOH HOH . H 6 HOH A 36 536 177 HOH HOH . H 6 HOH A 37 537 234 HOH HOH . H 6 HOH A 38 538 110 HOH HOH . H 6 HOH A 39 539 25 HOH HOH . H 6 HOH A 40 540 159 HOH HOH . H 6 HOH A 41 541 58 HOH HOH . H 6 HOH A 42 542 48 HOH HOH . H 6 HOH A 43 543 136 HOH HOH . H 6 HOH A 44 544 18 HOH HOH . H 6 HOH A 45 545 101 HOH HOH . H 6 HOH A 46 546 220 HOH HOH . H 6 HOH A 47 547 73 HOH HOH . H 6 HOH A 48 548 62 HOH HOH . H 6 HOH A 49 549 208 HOH HOH . H 6 HOH A 50 550 107 HOH HOH . H 6 HOH A 51 551 43 HOH HOH . H 6 HOH A 52 552 7 HOH HOH . H 6 HOH A 53 553 47 HOH HOH . H 6 HOH A 54 554 15 HOH HOH . H 6 HOH A 55 555 120 HOH HOH . H 6 HOH A 56 556 44 HOH HOH . H 6 HOH A 57 557 134 HOH HOH . H 6 HOH A 58 558 40 HOH HOH . H 6 HOH A 59 559 106 HOH HOH . H 6 HOH A 60 560 197 HOH HOH . H 6 HOH A 61 561 92 HOH HOH . H 6 HOH A 62 562 111 HOH HOH . H 6 HOH A 63 563 99 HOH HOH . H 6 HOH A 64 564 181 HOH HOH . H 6 HOH A 65 565 241 HOH HOH . H 6 HOH A 66 566 132 HOH HOH . H 6 HOH A 67 567 63 HOH HOH . H 6 HOH A 68 568 53 HOH HOH . H 6 HOH A 69 569 36 HOH HOH . H 6 HOH A 70 570 29 HOH HOH . H 6 HOH A 71 571 12 HOH HOH . H 6 HOH A 72 572 35 HOH HOH . H 6 HOH A 73 573 212 HOH HOH . H 6 HOH A 74 574 9 HOH HOH . H 6 HOH A 75 575 86 HOH HOH . H 6 HOH A 76 576 85 HOH HOH . H 6 HOH A 77 577 30 HOH HOH . H 6 HOH A 78 578 28 HOH HOH . H 6 HOH A 79 579 89 HOH HOH . H 6 HOH A 80 580 10 HOH HOH . H 6 HOH A 81 581 186 HOH HOH . H 6 HOH A 82 582 64 HOH HOH . H 6 HOH A 83 583 61 HOH HOH . H 6 HOH A 84 584 222 HOH HOH . H 6 HOH A 85 585 21 HOH HOH . H 6 HOH A 86 586 188 HOH HOH . H 6 HOH A 87 587 69 HOH HOH . H 6 HOH A 88 588 52 HOH HOH . H 6 HOH A 89 589 77 HOH HOH . H 6 HOH A 90 590 33 HOH HOH . H 6 HOH A 91 591 31 HOH HOH . H 6 HOH A 92 592 65 HOH HOH . H 6 HOH A 93 593 78 HOH HOH . H 6 HOH A 94 594 50 HOH HOH . H 6 HOH A 95 595 83 HOH HOH . H 6 HOH A 96 596 39 HOH HOH . H 6 HOH A 97 597 41 HOH HOH . H 6 HOH A 98 598 183 HOH HOH . H 6 HOH A 99 599 171 HOH HOH . H 6 HOH A 100 600 147 HOH HOH . H 6 HOH A 101 601 3 HOH HOH . H 6 HOH A 102 602 145 HOH HOH . H 6 HOH A 103 603 191 HOH HOH . H 6 HOH A 104 604 54 HOH HOH . H 6 HOH A 105 605 172 HOH HOH . H 6 HOH A 106 606 235 HOH HOH . H 6 HOH A 107 607 46 HOH HOH . H 6 HOH A 108 608 153 HOH HOH . H 6 HOH A 109 609 97 HOH HOH . H 6 HOH A 110 610 90 HOH HOH . H 6 HOH A 111 611 129 HOH HOH . H 6 HOH A 112 612 137 HOH HOH . H 6 HOH A 113 613 5 HOH HOH . H 6 HOH A 114 614 23 HOH HOH . H 6 HOH A 115 615 94 HOH HOH . H 6 HOH A 116 616 49 HOH HOH . H 6 HOH A 117 617 176 HOH HOH . H 6 HOH A 118 618 2 HOH HOH . H 6 HOH A 119 619 237 HOH HOH . H 6 HOH A 120 620 55 HOH HOH . H 6 HOH A 121 621 247 HOH HOH . H 6 HOH A 122 622 82 HOH HOH . H 6 HOH A 123 623 26 HOH HOH . H 6 HOH A 124 624 68 HOH HOH . H 6 HOH A 125 625 14 HOH HOH . H 6 HOH A 126 626 149 HOH HOH . H 6 HOH A 127 627 166 HOH HOH . H 6 HOH A 128 628 37 HOH HOH . H 6 HOH A 129 629 56 HOH HOH . H 6 HOH A 130 630 6 HOH HOH . H 6 HOH A 131 631 187 HOH HOH . H 6 HOH A 132 632 4 HOH HOH . H 6 HOH A 133 633 184 HOH HOH . H 6 HOH A 134 634 230 HOH HOH . H 6 HOH A 135 635 108 HOH HOH . H 6 HOH A 136 636 102 HOH HOH . H 6 HOH A 137 637 103 HOH HOH . H 6 HOH A 138 638 104 HOH HOH . H 6 HOH A 139 639 76 HOH HOH . H 6 HOH A 140 640 195 HOH HOH . H 6 HOH A 141 641 24 HOH HOH . H 6 HOH A 142 642 162 HOH HOH . H 6 HOH A 143 643 174 HOH HOH . H 6 HOH A 144 644 93 HOH HOH . H 6 HOH A 145 645 17 HOH HOH . H 6 HOH A 146 646 72 HOH HOH . H 6 HOH A 147 647 198 HOH HOH . H 6 HOH A 148 648 185 HOH HOH . H 6 HOH A 149 649 128 HOH HOH . H 6 HOH A 150 650 42 HOH HOH . H 6 HOH A 151 651 178 HOH HOH . H 6 HOH A 152 652 150 HOH HOH . H 6 HOH A 153 653 88 HOH HOH . H 6 HOH A 154 654 169 HOH HOH . H 6 HOH A 155 655 164 HOH HOH . H 6 HOH A 156 656 75 HOH HOH . H 6 HOH A 157 657 242 HOH HOH . H 6 HOH A 158 658 221 HOH HOH . H 6 HOH A 159 659 19 HOH HOH . H 6 HOH A 160 660 249 HOH HOH . H 6 HOH A 161 661 138 HOH HOH . H 6 HOH A 162 662 218 HOH HOH . H 6 HOH A 163 663 141 HOH HOH . H 6 HOH A 164 664 163 HOH HOH . H 6 HOH A 165 665 152 HOH HOH . H 6 HOH A 166 666 154 HOH HOH . H 6 HOH A 167 667 139 HOH HOH . H 6 HOH A 168 668 133 HOH HOH . H 6 HOH A 169 669 112 HOH HOH . H 6 HOH A 170 670 144 HOH HOH . H 6 HOH A 171 671 223 HOH HOH . H 6 HOH A 172 672 74 HOH HOH . H 6 HOH A 173 673 125 HOH HOH . H 6 HOH A 174 674 119 HOH HOH . H 6 HOH A 175 675 248 HOH HOH . H 6 HOH A 176 676 224 HOH HOH . H 6 HOH A 177 677 175 HOH HOH . H 6 HOH A 178 678 45 HOH HOH . H 6 HOH A 179 679 202 HOH HOH . H 6 HOH A 180 680 200 HOH HOH . H 6 HOH A 181 681 79 HOH HOH . H 6 HOH A 182 682 127 HOH HOH . H 6 HOH A 183 683 240 HOH HOH . H 6 HOH A 184 684 130 HOH HOH . H 6 HOH A 185 685 146 HOH HOH . H 6 HOH A 186 686 161 HOH HOH . H 6 HOH A 187 687 201 HOH HOH . H 6 HOH A 188 688 207 HOH HOH . H 6 HOH A 189 689 87 HOH HOH . H 6 HOH A 190 690 131 HOH HOH . H 6 HOH A 191 691 196 HOH HOH . H 6 HOH A 192 692 233 HOH HOH . H 6 HOH A 193 693 226 HOH HOH . H 6 HOH A 194 694 236 HOH HOH . H 6 HOH A 195 695 239 HOH HOH . H 6 HOH A 196 696 219 HOH HOH . H 6 HOH A 197 697 209 HOH HOH . H 6 HOH A 198 698 238 HOH HOH . H 6 HOH A 199 699 105 HOH HOH . H 6 HOH A 200 700 227 HOH HOH . H 6 HOH A 201 701 244 HOH HOH . H 6 HOH A 202 702 215 HOH HOH . H 6 HOH A 203 703 228 HOH HOH . H 6 HOH A 204 704 216 HOH HOH . H 6 HOH A 205 705 34 HOH HOH . H 6 HOH A 206 706 229 HOH HOH . H 6 HOH A 207 707 232 HOH HOH . H 6 HOH A 208 708 165 HOH HOH . H 6 HOH A 209 709 225 HOH HOH . H 6 HOH A 210 710 211 HOH HOH . H 6 HOH A 211 711 143 HOH HOH . H 6 HOH A 212 712 182 HOH HOH . H 6 HOH A 213 713 205 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 30.204 6.841 6.764 1 66.91 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . B 2 29.801 8.007 6.053 1 53.97 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . B 2 29.008 6.113 7.375 1 59.36 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . B 2 28.384 5.323 6.389 1 37.92 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . B 2 29.446 5.209 8.522 1 52.61 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . B 2 28.335 4.85 9.346 1 50.45 ? O3 GOL 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 50 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #