data_5GJP # _model_server_result.job_id x5NJw0qDc3b3JGs8NNmDTw _model_server_result.datetime_utc '2024-12-08 08:38:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gjp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 5GJP # _exptl.entry_id 5GJP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5GJP _cell.length_a 111.734 _cell.length_b 111.734 _cell.length_c 112.976 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GJP _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 270 n n C1 C2 PGE sing 271 n n C1 H1 PGE sing 272 n n C1 H12 PGE sing 273 n n O1 HO1 PGE sing 274 n n C2 O2 PGE sing 275 n n C2 H2 PGE sing 276 n n C2 H22 PGE sing 277 n n O2 C3 PGE sing 278 n n C3 C4 PGE sing 279 n n C3 H3 PGE sing 280 n n C3 H32 PGE sing 281 n n C4 O3 PGE sing 282 n n C4 H4 PGE sing 283 n n C4 H42 PGE sing 284 n n O4 C6 PGE sing 285 n n O4 HO4 PGE sing 286 n n C6 C5 PGE sing 287 n n C6 H6 PGE sing 288 n n C6 H62 PGE sing 289 n n C5 O3 PGE sing 290 n n C5 H5 PGE sing 291 n n C5 H52 PGE sing 292 n n # _atom_sites.entry_id 5GJP _atom_sites.fract_transf_matrix[1][1] 0.00895 _atom_sites.fract_transf_matrix[1][2] 0.005167 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008851 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 N2P A 1 401 1 N2P LYS . C 3 PLP A 1 402 1 PLP PLP . D 4 GOL A 1 403 1 GOL GOL . E 4 GOL A 1 404 2 GOL GOL . F 5 PGE A 1 405 1 PGE PGE . G 6 NA A 1 406 1 NA NA . H 6 NA A 1 407 2 NA NA . I 7 MG A 1 408 1 MG MG . J 8 HOH A 1 501 41 HOH HOH . J 8 HOH A 2 502 1 HOH HOH . J 8 HOH A 3 503 40 HOH HOH . J 8 HOH A 4 504 3 HOH HOH . J 8 HOH A 5 505 23 HOH HOH . J 8 HOH A 6 506 7 HOH HOH . J 8 HOH A 7 507 20 HOH HOH . J 8 HOH A 8 508 12 HOH HOH . J 8 HOH A 9 509 19 HOH HOH . J 8 HOH A 10 510 8 HOH HOH . J 8 HOH A 11 511 36 HOH HOH . J 8 HOH A 12 512 11 HOH HOH . J 8 HOH A 13 513 6 HOH HOH . J 8 HOH A 14 514 16 HOH HOH . J 8 HOH A 15 515 2 HOH HOH . J 8 HOH A 16 516 4 HOH HOH . J 8 HOH A 17 517 26 HOH HOH . J 8 HOH A 18 518 10 HOH HOH . J 8 HOH A 19 519 21 HOH HOH . J 8 HOH A 20 520 15 HOH HOH . J 8 HOH A 21 521 18 HOH HOH . J 8 HOH A 22 522 37 HOH HOH . J 8 HOH A 23 523 27 HOH HOH . J 8 HOH A 24 524 43 HOH HOH . J 8 HOH A 25 525 25 HOH HOH . J 8 HOH A 26 526 38 HOH HOH . J 8 HOH A 27 527 42 HOH HOH . J 8 HOH A 28 528 32 HOH HOH . J 8 HOH A 29 529 24 HOH HOH . J 8 HOH A 30 530 44 HOH HOH . J 8 HOH A 31 531 33 HOH HOH . J 8 HOH A 32 532 9 HOH HOH . J 8 HOH A 33 533 29 HOH HOH . J 8 HOH A 34 534 35 HOH HOH . J 8 HOH A 35 535 30 HOH HOH . J 8 HOH A 36 536 34 HOH HOH . J 8 HOH A 37 537 5 HOH HOH . J 8 HOH A 38 538 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . F 5 -38.888 -21.908 19.488 1 73.62 ? C1 PGE 405 A 1 HETATM 2 O O1 PGE . . . F 5 -39.321 -22.66 20.629 1 67.02 ? O1 PGE 405 A 1 HETATM 3 C C2 PGE . . . F 5 -39.799 -20.737 19.073 1 72.71 ? C2 PGE 405 A 1 HETATM 4 O O2 PGE . . . F 5 -39.015 -19.654 18.529 1 71.94 ? O2 PGE 405 A 1 HETATM 5 C C3 PGE . . . F 5 -38.408 -19.924 17.26 1 67.86 ? C3 PGE 405 A 1 HETATM 6 C C4 PGE . . . F 5 -37.543 -18.752 16.801 1 73.76 ? C4 PGE 405 A 1 HETATM 7 O O4 PGE . . . F 5 -33.714 -18.724 15.395 1 94.61 ? O4 PGE 405 A 1 HETATM 8 C C6 PGE . . . F 5 -34.687 -19.433 14.626 1 90.11 ? C6 PGE 405 A 1 HETATM 9 C C5 PGE . . . F 5 -35.836 -19.956 15.497 1 84.87 ? C5 PGE 405 A 1 HETATM 10 O O3 PGE . . . F 5 -36.157 -19.097 16.601 1 82.66 ? O3 PGE 405 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #