data_5GJQ # _model_server_result.job_id iGyuRqZ3VubgVR3Z4Lt2qg _model_server_result.datetime_utc '2025-02-17 05:29:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gjq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"BB","auth_seq_id":501}' # _entry.id 5GJQ # _exptl.entry_id 5GJQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 35 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5GJQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GJQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 48-meric _pdbx_struct_assembly.oligomeric_count 48 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 35 WA N N ? 35 XA N N ? 35 YA N N ? 35 ZA N N ? 35 AB N N ? 35 BB N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id VA _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 75 _struct_conn.ptnr1_auth_asym_id y _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 75 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id VA _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id GLZ _struct_conn.ptnr2_label_seq_id 76 _struct_conn.ptnr2_auth_asym_id y _struct_conn.ptnr2_auth_comp_id GLZ _struct_conn.ptnr2_auth_seq_id 76 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.53 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5GJQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code WA 35 ADP H 1 501 501 ADP ADP . XA 35 ADP I 1 501 501 ADP ADP . YA 35 ADP J 1 501 501 ADP ADP . ZA 35 ADP K 1 501 501 ADP ADP . AB 35 ADP L 1 401 401 ADP ADP . BB 35 ADP M 1 501 501 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . BB 35 180.249 259.019 294.636 1 139.18 ? PB ADP 501 M 1 HETATM 2 O O1B ADP . . . BB 35 181.718 258.896 295.061 1 124.22 ? O1B ADP 501 M 1 HETATM 3 O O2B ADP . . . BB 35 179.977 260.179 293.664 1 95.98 ? O2B ADP 501 M 1 HETATM 4 O O3B ADP . . . BB 35 179.136 258.952 295.706 1 116.59 ? O3B ADP 501 M 1 HETATM 5 P PA ADP . . . BB 35 180.658 256.173 294.782 1 88.4 ? PA ADP 501 M 1 HETATM 6 O O1A ADP . . . BB 35 182.184 256.359 294.702 1 70.42 ? O1A ADP 501 M 1 HETATM 7 O O2A ADP . . . BB 35 179.832 256.024 296.084 1 91.76 ? O2A ADP 501 M 1 HETATM 8 O O3A ADP . . . BB 35 180.024 257.498 294.022 1 119.12 ? O3A ADP 501 M 1 HETATM 9 O O5' ADP . . . BB 35 180.315 254.825 293.929 1 91.81 ? O5' ADP 501 M 1 HETATM 10 C C5' ADP . . . BB 35 179.41 253.837 294.428 1 103.26 ? C5' ADP 501 M 1 HETATM 11 C C4' ADP . . . BB 35 179.767 252.451 293.854 1 105.21 ? C4' ADP 501 M 1 HETATM 12 O O4' ADP . . . BB 35 181.07 252.136 294.296 1 94.01 ? O4' ADP 501 M 1 HETATM 13 C C3' ADP . . . BB 35 178.854 251.288 294.28 1 95.31 ? C3' ADP 501 M 1 HETATM 14 O O3' ADP . . . BB 35 178.268 250.653 293.132 1 93.81 ? O3' ADP 501 M 1 HETATM 15 C C2' ADP . . . BB 35 179.696 250.267 295.004 1 80.43 ? C2' ADP 501 M 1 HETATM 16 O O2' ADP . . . BB 35 179.599 248.974 294.403 1 60.88 ? O2' ADP 501 M 1 HETATM 17 C C1' ADP . . . BB 35 181.086 250.788 294.776 1 81.86 ? C1' ADP 501 M 1 HETATM 18 N N9 ADP . . . BB 35 181.899 250.643 295.991 1 85.03 ? N9 ADP 501 M 1 HETATM 19 C C8 ADP . . . BB 35 182.91 251.449 296.298 1 84.7 ? C8 ADP 501 M 1 HETATM 20 N N7 ADP . . . BB 35 183.573 251.099 297.427 1 79.4 ? N7 ADP 501 M 1 HETATM 21 C C5 ADP . . . BB 35 182.934 250.019 297.856 1 93.56 ? C5 ADP 501 M 1 HETATM 22 C C6 ADP . . . BB 35 183.085 249.118 299.005 1 110.65 ? C6 ADP 501 M 1 HETATM 23 N N6 ADP . . . BB 35 184.076 249.368 299.894 1 121.41 ? N6 ADP 501 M 1 HETATM 24 N N1 ADP . . . BB 35 182.216 248.072 299.115 1 103.57 ? N1 ADP 501 M 1 HETATM 25 C C2 ADP . . . BB 35 181.233 247.872 298.216 1 96.83 ? C2 ADP 501 M 1 HETATM 26 N N3 ADP . . . BB 35 181.041 248.659 297.137 1 100.58 ? N3 ADP 501 M 1 HETATM 27 C C4 ADP . . . BB 35 181.84 249.717 296.914 1 92.96 ? C4 ADP 501 M 1 # _model_server_stats.io_time_ms 230 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 198 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #