data_5GJQ # _model_server_result.job_id LdFqLivVdZYl70J7gCUIiA _model_server_result.datetime_utc '2024-11-26 22:04:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gjq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"XA","auth_seq_id":501}' # _entry.id 5GJQ # _exptl.entry_id 5GJQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 35 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5GJQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GJQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 48-meric _pdbx_struct_assembly.oligomeric_count 48 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 35 WA N N ? 35 XA N N ? 35 YA N N ? 35 ZA N N ? 35 AB N N ? 35 BB N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id VA _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 75 _struct_conn.ptnr1_auth_asym_id y _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 75 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id VA _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id GLZ _struct_conn.ptnr2_label_seq_id 76 _struct_conn.ptnr2_auth_asym_id y _struct_conn.ptnr2_auth_comp_id GLZ _struct_conn.ptnr2_auth_seq_id 76 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.53 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5GJQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code WA 35 ADP H 1 501 501 ADP ADP . XA 35 ADP I 1 501 501 ADP ADP . YA 35 ADP J 1 501 501 ADP ADP . ZA 35 ADP K 1 501 501 ADP ADP . AB 35 ADP L 1 401 401 ADP ADP . BB 35 ADP M 1 501 501 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . XA 35 183.674 288.909 250.226 1 109.29 ? PB ADP 501 I 1 HETATM 2 O O1B ADP . . . XA 35 183.573 287.411 250.059 1 111.14 ? O1B ADP 501 I 1 HETATM 3 O O2B ADP . . . XA 35 184.975 289.355 250.853 1 86.98 ? O2B ADP 501 I 1 HETATM 4 O O3B ADP . . . XA 35 182.434 289.604 250.783 1 103.1 ? O3B ADP 501 I 1 HETATM 5 P PA ADP . . . XA 35 182.456 289.181 247.647 1 105.45 ? PA ADP 501 I 1 HETATM 6 O O1A ADP . . . XA 35 183.054 288.439 246.487 1 102.16 ? O1A ADP 501 I 1 HETATM 7 O O2A ADP . . . XA 35 181.388 288.528 248.467 1 122.3 ? O2A ADP 501 I 1 HETATM 8 O O3A ADP . . . XA 35 183.713 289.415 248.677 1 116.78 ? O3A ADP 501 I 1 HETATM 9 O O5' ADP . . . XA 35 181.831 290.56 247.155 1 118.39 ? O5' ADP 501 I 1 HETATM 10 C C5' ADP . . . XA 35 182.767 291.382 246.448 1 159.9 ? C5' ADP 501 I 1 HETATM 11 C C4' ADP . . . XA 35 182.247 292.214 245.29 1 173.09 ? C4' ADP 501 I 1 HETATM 12 O O4' ADP . . . XA 35 183.337 292.445 244.351 1 171.38 ? O4' ADP 501 I 1 HETATM 13 C C3' ADP . . . XA 35 181.13 291.518 244.556 1 156.57 ? C3' ADP 501 I 1 HETATM 14 O O3' ADP . . . XA 35 179.894 292.181 244.684 1 179.01 ? O3' ADP 501 I 1 HETATM 15 C C2' ADP . . . XA 35 181.544 291.707 243.08 1 146.25 ? C2' ADP 501 I 1 HETATM 16 O O2' ADP . . . XA 35 180.819 292.675 242.287 1 125.44 ? O2' ADP 501 I 1 HETATM 17 C C1' ADP . . . XA 35 183 292.086 243.011 1 147.37 ? C1' ADP 501 I 1 HETATM 18 N N9 ADP . . . XA 35 183.792 290.871 242.562 1 178.24 ? N9 ADP 501 I 1 HETATM 19 C C8 ADP . . . XA 35 184.698 290.096 243.246 1 178.75 ? C8 ADP 501 I 1 HETATM 20 N N7 ADP . . . XA 35 185.222 289.038 242.525 1 109.07 ? N7 ADP 501 I 1 HETATM 21 C C5 ADP . . . XA 35 184.627 289.139 241.326 1 120.17 ? C5 ADP 501 I 1 HETATM 22 C C6 ADP . . . XA 35 184.713 288.392 240.057 1 106.83 ? C6 ADP 501 I 1 HETATM 23 N N6 ADP . . . XA 35 185.527 287.331 239.958 1 105.49 ? N6 ADP 501 I 1 HETATM 24 N N1 ADP . . . XA 35 183.926 288.818 239.022 1 122.76 ? N1 ADP 501 I 1 HETATM 25 C C2 ADP . . . XA 35 183.093 289.901 239.111 1 134.14 ? C2 ADP 501 I 1 HETATM 26 N N3 ADP . . . XA 35 182.959 290.655 240.236 1 149.52 ? N3 ADP 501 I 1 HETATM 27 C C4 ADP . . . XA 35 183.685 290.333 241.355 1 161.61 ? C4 ADP 501 I 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 144 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #