data_5GJQ # _model_server_result.job_id SkCWJZqhUtJLCBAISI70cg _model_server_result.datetime_utc '2024-11-26 23:01:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gjq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"YA","auth_seq_id":501}' # _entry.id 5GJQ # _exptl.entry_id 5GJQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 35 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5GJQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GJQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 48-meric _pdbx_struct_assembly.oligomeric_count 48 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 35 WA N N ? 35 XA N N ? 35 YA N N ? 35 ZA N N ? 35 AB N N ? 35 BB N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id VA _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 75 _struct_conn.ptnr1_auth_asym_id y _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 75 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id VA _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id GLZ _struct_conn.ptnr2_label_seq_id 76 _struct_conn.ptnr2_auth_asym_id y _struct_conn.ptnr2_auth_comp_id GLZ _struct_conn.ptnr2_auth_seq_id 76 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.53 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5GJQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code WA 35 ADP H 1 501 501 ADP ADP . XA 35 ADP I 1 501 501 ADP ADP . YA 35 ADP J 1 501 501 ADP ADP . ZA 35 ADP K 1 501 501 ADP ADP . AB 35 ADP L 1 401 401 ADP ADP . BB 35 ADP M 1 501 501 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . YA 35 179.041 314.046 266.068 1 172.51 ? PB ADP 501 J 1 HETATM 2 O O1B ADP . . . YA 35 177.838 313.998 265.166 1 183.12 ? O1B ADP 501 J 1 HETATM 3 O O2B ADP . . . YA 35 180.139 314.856 265.389 1 160 ? O2B ADP 501 J 1 HETATM 4 O O3B ADP . . . YA 35 179.4 312.742 266.772 1 143.83 ? O3B ADP 501 J 1 HETATM 5 P PA ADP . . . YA 35 177.385 316.095 267.103 1 151.7 ? PA ADP 501 J 1 HETATM 6 O O1A ADP . . . YA 35 177.572 316.596 265.689 1 166.11 ? O1A ADP 501 J 1 HETATM 7 O O2A ADP . . . YA 35 176.047 315.512 267.563 1 114.68 ? O2A ADP 501 J 1 HETATM 8 O O3A ADP . . . YA 35 178.536 314.977 267.307 1 173.51 ? O3A ADP 501 J 1 HETATM 9 O O5' ADP . . . YA 35 177.826 317.332 268.058 1 137.29 ? O5' ADP 501 J 1 HETATM 10 C C5' ADP . . . YA 35 176.804 317.981 268.861 1 150.32 ? C5' ADP 501 J 1 HETATM 11 C C4' ADP . . . YA 35 176.563 319.511 268.667 1 145.1 ? C4' ADP 501 J 1 HETATM 12 O O4' ADP . . . YA 35 177.495 319.973 267.742 1 121.86 ? O4' ADP 501 J 1 HETATM 13 C C3' ADP . . . YA 35 175.174 319.892 268.111 1 159.85 ? C3' ADP 501 J 1 HETATM 14 O O3' ADP . . . YA 35 174.456 320.604 269.148 1 158.28 ? O3' ADP 501 J 1 HETATM 15 C C2' ADP . . . YA 35 175.341 320.635 266.779 1 130.1 ? C2' ADP 501 J 1 HETATM 16 O O2' ADP . . . YA 35 174.498 321.767 266.937 1 117.08 ? O2' ADP 501 J 1 HETATM 17 C C1' ADP . . . YA 35 176.807 320.883 266.86 1 115.95 ? C1' ADP 501 J 1 HETATM 18 N N9 ADP . . . YA 35 177.505 321.009 265.606 1 91.51 ? N9 ADP 501 J 1 HETATM 19 C C8 ADP . . . YA 35 178.563 320.297 265.274 1 83.33 ? C8 ADP 501 J 1 HETATM 20 N N7 ADP . . . YA 35 179.067 320.818 264.112 1 80.19 ? N7 ADP 501 J 1 HETATM 21 C C5 ADP . . . YA 35 178.323 321.848 263.721 1 69.73 ? C5 ADP 501 J 1 HETATM 22 C C6 ADP . . . YA 35 178.27 322.772 262.571 1 68.13 ? C6 ADP 501 J 1 HETATM 23 N N6 ADP . . . YA 35 179.177 322.693 261.563 1 65.97 ? N6 ADP 501 J 1 HETATM 24 N N1 ADP . . . YA 35 177.28 323.69 262.539 1 72.11 ? N1 ADP 501 J 1 HETATM 25 C C2 ADP . . . YA 35 176.363 323.774 263.492 1 79.29 ? C2 ADP 501 J 1 HETATM 26 N N3 ADP . . . YA 35 176.359 322.921 264.552 1 95.48 ? N3 ADP 501 J 1 HETATM 27 C C4 ADP . . . YA 35 177.283 321.953 264.713 1 82.03 ? C4 ADP 501 J 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 137 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #