data_5GJQ # _model_server_result.job_id Mi9ASjDeAvKgi6CZSLX04g _model_server_result.datetime_utc '2025-02-17 05:30:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gjq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"ZA","auth_seq_id":501}' # _entry.id 5GJQ # _exptl.entry_id 5GJQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 35 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5GJQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GJQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 48-meric _pdbx_struct_assembly.oligomeric_count 48 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 35 WA N N ? 35 XA N N ? 35 YA N N ? 35 ZA N N ? 35 AB N N ? 35 BB N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id VA _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 75 _struct_conn.ptnr1_auth_asym_id y _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 75 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id VA _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id GLZ _struct_conn.ptnr2_label_seq_id 76 _struct_conn.ptnr2_auth_asym_id y _struct_conn.ptnr2_auth_comp_id GLZ _struct_conn.ptnr2_auth_seq_id 76 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.53 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5GJQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code WA 35 ADP H 1 501 501 ADP ADP . XA 35 ADP I 1 501 501 ADP ADP . YA 35 ADP J 1 501 501 ADP ADP . ZA 35 ADP K 1 501 501 ADP ADP . AB 35 ADP L 1 401 401 ADP ADP . BB 35 ADP M 1 501 501 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . ZA 35 175.921 309.677 298.03 1 122.9 ? PB ADP 501 K 1 HETATM 2 O O1B ADP . . . ZA 35 174.524 310.288 298.219 1 98.87 ? O1B ADP 501 K 1 HETATM 3 O O2B ADP . . . ZA 35 176.416 310.12 296.681 1 107.56 ? O2B ADP 501 K 1 HETATM 4 O O3B ADP . . . ZA 35 176.348 308.219 298.487 1 80.81 ? O3B ADP 501 K 1 HETATM 5 P PA ADP . . . ZA 35 176.679 312.195 299.203 1 93.06 ? PA ADP 501 K 1 HETATM 6 O O1A ADP . . . ZA 35 177.923 312.475 298.409 1 81.46 ? O1A ADP 501 K 1 HETATM 7 O O2A ADP . . . ZA 35 175.316 312.679 298.826 1 75.12 ? O2A ADP 501 K 1 HETATM 8 O O3A ADP . . . ZA 35 176.733 310.572 299.092 1 121.99 ? O3A ADP 501 K 1 HETATM 9 O O5' ADP . . . ZA 35 176.929 312.53 300.814 1 128.91 ? O5' ADP 501 K 1 HETATM 10 C C5' ADP . . . ZA 35 178.127 313.169 301.249 1 160.09 ? C5' ADP 501 K 1 HETATM 11 C C4' ADP . . . ZA 35 178.635 312.867 302.697 1 159.38 ? C4' ADP 501 K 1 HETATM 12 O O4' ADP . . . ZA 35 179.992 313.341 302.908 1 138.15 ? O4' ADP 501 K 1 HETATM 13 C C3' ADP . . . ZA 35 177.852 313.637 303.715 1 162.84 ? C3' ADP 501 K 1 HETATM 14 O O3' ADP . . . ZA 35 177.682 312.796 304.852 1 169.24 ? O3' ADP 501 K 1 HETATM 15 C C2' ADP . . . ZA 35 178.681 314.887 304.038 1 136.39 ? C2' ADP 501 K 1 HETATM 16 O O2' ADP . . . ZA 35 178.518 315.272 305.39 1 121.76 ? O2' ADP 501 K 1 HETATM 17 C C1' ADP . . . ZA 35 180.11 314.526 303.727 1 115.38 ? C1' ADP 501 K 1 HETATM 18 N N9 ADP . . . ZA 35 180.687 315.676 302.982 1 108.55 ? N9 ADP 501 K 1 HETATM 19 C C8 ADP . . . ZA 35 181.446 315.572 301.89 1 102.29 ? C8 ADP 501 K 1 HETATM 20 N N7 ADP . . . ZA 35 181.776 316.775 301.406 1 128.32 ? N7 ADP 501 K 1 HETATM 21 C C5 ADP . . . ZA 35 181.219 317.716 302.19 1 126.22 ? C5 ADP 501 K 1 HETATM 22 C C6 ADP . . . ZA 35 181.206 319.211 302.22 1 104.88 ? C6 ADP 501 K 1 HETATM 23 N N6 ADP . . . ZA 35 181.899 319.926 301.277 1 79.75 ? N6 ADP 501 K 1 HETATM 24 N N1 ADP . . . ZA 35 180.484 319.778 303.219 1 97.09 ? N1 ADP 501 K 1 HETATM 25 C C2 ADP . . . ZA 35 179.82 319.032 304.132 1 99.76 ? C2 ADP 501 K 1 HETATM 26 N N3 ADP . . . ZA 35 179.81 317.678 304.142 1 114.87 ? N3 ADP 501 K 1 HETATM 27 C C4 ADP . . . ZA 35 180.483 316.967 303.221 1 116.29 ? C4 ADP 501 K 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 513 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #