data_5GK9 # _model_server_result.job_id Vi2fg8dylcZqgC-cGzsj3Q _model_server_result.datetime_utc '2024-11-28 03:22:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gk9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 5GK9 # _exptl.entry_id 5GK9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 122.1 _cell.angle_gamma 90 _cell.entry_id 5GK9 _cell.length_a 126.47 _cell.length_b 39.321 _cell.length_c 87.666 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GK9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 33 A CYS 368 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc2 A SG CYS 36 A CYS 371 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc3 A SG CYS 53 A CYS 388 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc4 C ZN ZN . A ZN 701 1_555 E O HOH . A HOH 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 5GK9 _atom_sites.fract_transf_matrix[1][1] 0.007907 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00496 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025432 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013466 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 701 1 ZN ZN . D 4 ACO A 1 702 500 ACO ACO . E 5 HOH A 1 801 13 HOH HOH . E 5 HOH A 2 802 5 HOH HOH . E 5 HOH A 3 803 33 HOH HOH . E 5 HOH A 4 804 22 HOH HOH . E 5 HOH A 5 805 10 HOH HOH . E 5 HOH A 6 806 19 HOH HOH . E 5 HOH A 7 807 7 HOH HOH . E 5 HOH A 8 808 11 HOH HOH . E 5 HOH A 9 809 20 HOH HOH . E 5 HOH A 10 810 4 HOH HOH . E 5 HOH A 11 811 17 HOH HOH . E 5 HOH A 12 812 24 HOH HOH . E 5 HOH A 13 813 12 HOH HOH . E 5 HOH A 14 814 21 HOH HOH . E 5 HOH A 15 815 8 HOH HOH . E 5 HOH A 16 816 25 HOH HOH . E 5 HOH A 17 817 27 HOH HOH . E 5 HOH A 18 818 35 HOH HOH . E 5 HOH A 19 819 29 HOH HOH . E 5 HOH A 20 820 15 HOH HOH . F 5 HOH B 1 101 16 HOH HOH . F 5 HOH B 2 102 14 HOH HOH . F 5 HOH B 3 103 37 HOH HOH . F 5 HOH B 4 104 34 HOH HOH . F 5 HOH B 5 105 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . D 4 116.391 5.435 24.301 1 56.63 ? N1A ACO 702 A 1 HETATM 2 C C2A ACO . . . D 4 115.027 5.333 24.027 1 58.03 ? C2A ACO 702 A 1 HETATM 3 N N3A ACO . . . D 4 114.619 4.415 23.046 1 53.35 ? N3A ACO 702 A 1 HETATM 4 C C4A ACO . . . D 4 115.534 3.682 22.396 1 49.98 ? C4A ACO 702 A 1 HETATM 5 C C5A ACO . . . D 4 116.846 3.786 22.671 1 53.53 ? C5A ACO 702 A 1 HETATM 6 C C6A ACO . . . D 4 117.251 4.676 23.605 1 52.69 ? C6A ACO 702 A 1 HETATM 7 N N6A ACO . . . D 4 118.548 4.774 23.821 1 46.82 ? N6A ACO 702 A 1 HETATM 8 N N7A ACO . . . D 4 117.51 2.926 21.876 1 41.02 ? N7A ACO 702 A 1 HETATM 9 C C8A ACO . . . D 4 116.607 2.305 21.13 1 43.49 ? C8A ACO 702 A 1 HETATM 10 N N9A ACO . . . D 4 115.393 2.768 21.448 1 48.61 ? N9A ACO 702 A 1 HETATM 11 C C1B ACO . . . D 4 114.037 2.383 20.956 1 45.32 ? C1B ACO 702 A 1 HETATM 12 C C2B ACO . . . D 4 113.773 2.826 19.531 1 46.88 ? C2B ACO 702 A 1 HETATM 13 O O2B ACO . . . D 4 113.062 4.089 19.559 1 44.98 ? O2B ACO 702 A 1 HETATM 14 C C3B ACO . . . D 4 112.917 1.684 18.988 1 43.91 ? C3B ACO 702 A 1 HETATM 15 O O3B ACO . . . D 4 111.536 1.804 19.393 1 49.82 ? O3B ACO 702 A 1 HETATM 16 P P3B ACO . . . D 4 110.403 2.546 18.691 1 53.95 ? P3B ACO 702 A 1 HETATM 17 O O7A ACO . . . D 4 110.364 1.764 17.373 1 45.43 ? O7A ACO 702 A 1 HETATM 18 O O8A ACO . . . D 4 109.223 2.196 19.408 1 46.08 ? O8A ACO 702 A 1 HETATM 19 O O9A ACO . . . D 4 110.747 3.904 18.273 1 57.5 ? O9A ACO 702 A 1 HETATM 20 C C4B ACO . . . D 4 113.422 0.434 19.79 1 42.64 ? C4B ACO 702 A 1 HETATM 21 O O4B ACO . . . D 4 114.056 0.918 21.015 1 40.59 ? O4B ACO 702 A 1 HETATM 22 C C5B ACO . . . D 4 114.391 -0.472 19.032 1 39.43 ? C5B ACO 702 A 1 HETATM 23 O O5B ACO . . . D 4 115.103 0.322 18.179 1 36.66 ? O5B ACO 702 A 1 HETATM 24 P P1A ACO . . . D 4 116.237 -0.26 17.281 1 31.83 ? P1A ACO 702 A 1 HETATM 25 O O1A ACO . . . D 4 115.655 -1.378 16.568 1 37.46 ? O1A ACO 702 A 1 HETATM 26 O O2A ACO . . . D 4 116.906 0.845 16.548 1 36.51 ? O2A ACO 702 A 1 HETATM 27 O O3A ACO . . . D 4 117.267 -0.83 18.456 1 35.92 ? O3A ACO 702 A 1 HETATM 28 P P2A ACO . . . D 4 118.844 -0.725 18.408 1 33.42 ? P2A ACO 702 A 1 HETATM 29 O O4A ACO . . . D 4 119.324 -1.163 17.088 1 34.5 ? O4A ACO 702 A 1 HETATM 30 O O5A ACO . . . D 4 119.2 0.692 18.811 1 34.36 ? O5A ACO 702 A 1 HETATM 31 O O6A ACO . . . D 4 119.236 -1.873 19.4 1 26.22 ? O6A ACO 702 A 1 HETATM 32 C CBP ACO . . . D 4 119.563 -2.941 21.515 1 28.27 ? CBP ACO 702 A 1 HETATM 33 C CCP ACO . . . D 4 118.592 -2.169 20.621 1 29.57 ? CCP ACO 702 A 1 HETATM 34 C CDP ACO . . . D 4 120.06 -4.189 20.755 1 28.63 ? CDP ACO 702 A 1 HETATM 35 C CEP ACO . . . D 4 118.821 -3.317 22.797 1 30.01 ? CEP ACO 702 A 1 HETATM 36 C CAP ACO . . . D 4 120.658 -2.007 21.926 1 27.33 ? CAP ACO 702 A 1 HETATM 37 O OAP ACO . . . D 4 120.066 -0.908 22.725 1 30.82 ? OAP ACO 702 A 1 HETATM 38 C C9P ACO . . . D 4 121.817 -2.604 22.651 1 27.91 ? C9P ACO 702 A 1 HETATM 39 O O9P ACO . . . D 4 122.751 -3.14 22.034 1 29.38 ? O9P ACO 702 A 1 HETATM 40 N N8P ACO . . . D 4 121.886 -2.296 23.966 1 29.44 ? N8P ACO 702 A 1 HETATM 41 C C7P ACO . . . D 4 123.067 -2.549 24.792 1 26.77 ? C7P ACO 702 A 1 HETATM 42 C C6P ACO . . . D 4 123.173 -3.96 25.037 1 27.03 ? C6P ACO 702 A 1 HETATM 43 C C5P ACO . . . D 4 121.913 -4.327 25.653 1 30.82 ? C5P ACO 702 A 1 HETATM 44 O O5P ACO . . . D 4 121.471 -3.641 26.572 1 33.48 ? O5P ACO 702 A 1 HETATM 45 N N4P ACO . . . D 4 121.434 -5.537 25.24 1 31.78 ? N4P ACO 702 A 1 HETATM 46 C C3P ACO . . . D 4 120.195 -6.143 25.724 1 33.82 ? C3P ACO 702 A 1 HETATM 47 C C2P ACO . . . D 4 120.531 -6.919 26.946 1 38.39 ? C2P ACO 702 A 1 HETATM 48 S S1P ACO . . . D 4 119.026 -7.828 27.374 1 49.48 ? S1P ACO 702 A 1 HETATM 49 C C ACO . . . D 4 119.339 -9.407 26.564 1 48.34 ? C ACO 702 A 1 HETATM 50 O O ACO . . . D 4 120.306 -9.67 25.857 1 45.86 ? O ACO 702 A 1 HETATM 51 C CH3 ACO . . . D 4 118.306 -10.464 26.869 1 52.07 ? CH3 ACO 702 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 51 #