data_5GLG # _model_server_result.job_id p5cw08u8HcjwprgQRthixw _model_server_result.datetime_utc '2025-07-01 17:03:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5glg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5GLG # _exptl.entry_id 5GLG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.088 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SUCCINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.55 _cell.angle_gamma 90 _cell.entry_id 5GLG _cell.length_a 43.638 _cell.length_b 109.274 _cell.length_c 49.933 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GLG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H6 O4' _chem_comp.formula_weight 118.088 _chem_comp.id SIN _chem_comp.mon_nstd_flag . _chem_comp.name 'SUCCINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 SIN doub 381 n n C1 O2 SIN sing 382 n n C1 C2 SIN sing 383 n n O2 HO2 SIN sing 384 n n C2 C3 SIN sing 385 n n C2 H21 SIN sing 386 n n C2 H22 SIN sing 387 n n C3 C4 SIN sing 388 n n C3 H31 SIN sing 389 n n C3 H32 SIN sing 390 n n C4 O3 SIN doub 391 n n C4 O4 SIN sing 392 n n O4 HO4 SIN sing 393 n n # _atom_sites.entry_id 5GLG _atom_sites.fract_transf_matrix[1][1] 0.022916 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009515 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009151 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021685 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SIN A 1 601 1 SIN SIN . C 3 FAD A 1 602 1 FAD FAD . D 4 HOH A 1 701 214 HOH HOH . D 4 HOH A 2 702 23 HOH HOH . D 4 HOH A 3 703 262 HOH HOH . D 4 HOH A 4 704 198 HOH HOH . D 4 HOH A 5 705 259 HOH HOH . D 4 HOH A 6 706 222 HOH HOH . D 4 HOH A 7 707 250 HOH HOH . D 4 HOH A 8 708 53 HOH HOH . D 4 HOH A 9 709 236 HOH HOH . D 4 HOH A 10 710 244 HOH HOH . D 4 HOH A 11 711 229 HOH HOH . D 4 HOH A 12 712 165 HOH HOH . D 4 HOH A 13 713 235 HOH HOH . D 4 HOH A 14 714 243 HOH HOH . D 4 HOH A 15 715 172 HOH HOH . D 4 HOH A 16 716 241 HOH HOH . D 4 HOH A 17 717 189 HOH HOH . D 4 HOH A 18 718 252 HOH HOH . D 4 HOH A 19 719 27 HOH HOH . D 4 HOH A 20 720 178 HOH HOH . D 4 HOH A 21 721 16 HOH HOH . D 4 HOH A 22 722 25 HOH HOH . D 4 HOH A 23 723 129 HOH HOH . D 4 HOH A 24 724 44 HOH HOH . D 4 HOH A 25 725 227 HOH HOH . D 4 HOH A 26 726 224 HOH HOH . D 4 HOH A 27 727 150 HOH HOH . D 4 HOH A 28 728 238 HOH HOH . D 4 HOH A 29 729 233 HOH HOH . D 4 HOH A 30 730 231 HOH HOH . D 4 HOH A 31 731 251 HOH HOH . D 4 HOH A 32 732 136 HOH HOH . D 4 HOH A 33 733 230 HOH HOH . D 4 HOH A 34 734 54 HOH HOH . D 4 HOH A 35 735 256 HOH HOH . D 4 HOH A 36 736 79 HOH HOH . D 4 HOH A 37 737 41 HOH HOH . D 4 HOH A 38 738 216 HOH HOH . D 4 HOH A 39 739 234 HOH HOH . D 4 HOH A 40 740 257 HOH HOH . D 4 HOH A 41 741 156 HOH HOH . D 4 HOH A 42 742 180 HOH HOH . D 4 HOH A 43 743 171 HOH HOH . D 4 HOH A 44 744 204 HOH HOH . D 4 HOH A 45 745 96 HOH HOH . D 4 HOH A 46 746 240 HOH HOH . D 4 HOH A 47 747 38 HOH HOH . D 4 HOH A 48 748 223 HOH HOH . D 4 HOH A 49 749 167 HOH HOH . D 4 HOH A 50 750 8 HOH HOH . D 4 HOH A 51 751 245 HOH HOH . D 4 HOH A 52 752 221 HOH HOH . D 4 HOH A 53 753 232 HOH HOH . D 4 HOH A 54 754 225 HOH HOH . D 4 HOH A 55 755 190 HOH HOH . D 4 HOH A 56 756 226 HOH HOH . D 4 HOH A 57 757 159 HOH HOH . D 4 HOH A 58 758 261 HOH HOH . D 4 HOH A 59 759 212 HOH HOH . D 4 HOH A 60 760 57 HOH HOH . D 4 HOH A 61 761 168 HOH HOH . D 4 HOH A 62 762 52 HOH HOH . D 4 HOH A 63 763 207 HOH HOH . D 4 HOH A 64 764 143 HOH HOH . D 4 HOH A 65 765 242 HOH HOH . D 4 HOH A 66 766 73 HOH HOH . D 4 HOH A 67 767 117 HOH HOH . D 4 HOH A 68 768 253 HOH HOH . D 4 HOH A 69 769 258 HOH HOH . D 4 HOH A 70 770 126 HOH HOH . D 4 HOH A 71 771 131 HOH HOH . D 4 HOH A 72 772 97 HOH HOH . D 4 HOH A 73 773 84 HOH HOH . D 4 HOH A 74 774 188 HOH HOH . D 4 HOH A 75 775 170 HOH HOH . D 4 HOH A 76 776 254 HOH HOH . D 4 HOH A 77 777 108 HOH HOH . D 4 HOH A 78 778 90 HOH HOH . D 4 HOH A 79 779 104 HOH HOH . D 4 HOH A 80 780 247 HOH HOH . D 4 HOH A 81 781 202 HOH HOH . D 4 HOH A 82 782 77 HOH HOH . D 4 HOH A 83 783 130 HOH HOH . D 4 HOH A 84 784 88 HOH HOH . D 4 HOH A 85 785 239 HOH HOH . D 4 HOH A 86 786 60 HOH HOH . D 4 HOH A 87 787 132 HOH HOH . D 4 HOH A 88 788 249 HOH HOH . D 4 HOH A 89 789 260 HOH HOH . D 4 HOH A 90 790 248 HOH HOH . D 4 HOH A 91 791 100 HOH HOH . D 4 HOH A 92 792 237 HOH HOH . D 4 HOH A 93 793 199 HOH HOH . D 4 HOH A 94 794 147 HOH HOH . D 4 HOH A 95 795 36 HOH HOH . D 4 HOH A 96 796 208 HOH HOH . D 4 HOH A 97 797 228 HOH HOH . D 4 HOH A 98 798 92 HOH HOH . D 4 HOH A 99 799 220 HOH HOH . D 4 HOH A 100 800 15 HOH HOH . D 4 HOH A 101 801 255 HOH HOH . D 4 HOH A 102 802 263 HOH HOH . D 4 HOH A 103 803 122 HOH HOH . D 4 HOH A 104 804 219 HOH HOH . D 4 HOH A 105 805 246 HOH HOH . D 4 HOH A 106 806 163 HOH HOH . D 4 HOH A 107 807 197 HOH HOH . D 4 HOH A 108 808 119 HOH HOH . D 4 HOH A 109 809 175 HOH HOH . D 4 HOH A 110 810 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SIN . . . B 2 14.633 25.102 7.683 1 20.48 ? C1 SIN 601 A 1 HETATM 2 O O1 SIN . . . B 2 14.255 24.574 6.63 1 25.28 ? O1 SIN 601 A 1 HETATM 3 O O2 SIN . . . B 2 15.323 26.106 7.589 1 20.81 ? O2 SIN 601 A 1 HETATM 4 C C2 SIN . . . B 2 14.455 24.305 8.928 1 26.44 ? C2 SIN 601 A 1 HETATM 5 C C3 SIN . . . B 2 13.396 23.232 8.528 1 33.69 ? C3 SIN 601 A 1 HETATM 6 C C4 SIN . . . B 2 12.982 22.335 9.671 1 27.66 ? C4 SIN 601 A 1 HETATM 7 O O3 SIN . . . B 2 13.786 21.567 9.912 1 21.83 ? O3 SIN 601 A 1 HETATM 8 O O4 SIN . . . B 2 11.874 22.575 10.272 1 53.93 ? O4 SIN 601 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #