data_5GLI # _model_server_result.job_id HqiilCImAMZuZT7NebHzGw _model_server_result.datetime_utc '2025-02-26 08:09:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gli # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1208}' # _entry.id 5GLI # _exptl.entry_id 5GLI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5GLI _cell.length_a 73.98 _cell.length_b 147.54 _cell.length_c 107.81 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GLI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 90 1_555 A SG CYS 406 A CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 112 A CYS 174 1_555 A SG CYS 193 A CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 290 n n C10 C9 OLC doub 291 n n C10 C11 OLC sing 292 n n C9 C8 OLC sing 293 n n C17 C16 OLC sing 294 z n C11 C12 OLC sing 295 n n C8 C7 OLC sing 296 n n C24 C22 OLC sing 297 n n C24 O25 OLC sing 298 n n C16 C15 OLC sing 299 n n C12 C13 OLC sing 300 n n C7 C6 OLC sing 301 n n C15 C14 OLC sing 302 n n C13 C14 OLC sing 303 n n C6 C5 OLC sing 304 n n C5 C4 OLC sing 305 n n C4 C3 OLC sing 306 n n C3 C2 OLC sing 307 n n C2 C1 OLC sing 308 n n C21 C22 OLC sing 309 n n C21 O20 OLC sing 310 n n C1 O19 OLC doub 311 n n C1 O20 OLC sing 312 n n C22 O23 OLC sing 313 n n C18 H18 OLC sing 314 n n C18 H18A OLC sing 315 n n C18 H18B OLC sing 316 n n C10 H10 OLC sing 317 n n C9 H9 OLC sing 318 n n C17 H17 OLC sing 319 n n C17 H17A OLC sing 320 n n C11 H11 OLC sing 321 n n C11 H11A OLC sing 322 n n C8 H8 OLC sing 323 n n C8 H8A OLC sing 324 n n C24 H24 OLC sing 325 n n C24 H24A OLC sing 326 n n C16 H16 OLC sing 327 n n C16 H16A OLC sing 328 n n C12 H12 OLC sing 329 n n C12 H12A OLC sing 330 n n C7 H7 OLC sing 331 n n C7 H7A OLC sing 332 n n C15 H15 OLC sing 333 n n C15 H15A OLC sing 334 n n C13 H13 OLC sing 335 n n C13 H13A OLC sing 336 n n C6 H6 OLC sing 337 n n C6 H6A OLC sing 338 n n C14 H14 OLC sing 339 n n C14 H14A OLC sing 340 n n C5 H5 OLC sing 341 n n C5 H5A OLC sing 342 n n C4 H4 OLC sing 343 n n C4 H4A OLC sing 344 n n C3 H3 OLC sing 345 n n C3 H3A OLC sing 346 n n C2 H2 OLC sing 347 n n C2 H2A OLC sing 348 n n C21 H21 OLC sing 349 n n C21 H21A OLC sing 350 n n C22 H22 OLC sing 351 n n O25 HO25 OLC sing 352 n n O23 HO23 OLC sing 353 n n # _atom_sites.entry_id 5GLI _atom_sites.fract_transf_matrix[1][1] 0.013517 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006778 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1201 1 SO4 SO4 . C 2 SO4 A 1 1202 4 SO4 SO4 . D 2 SO4 A 1 1203 5 SO4 SO4 . E 2 SO4 A 1 1204 8 SO4 SO4 . F 2 SO4 A 1 1205 9 SO4 SO4 . G 3 OLC A 1 1206 1 OLC OLC . H 4 OLA A 1 1207 2 OLA OLA . I 3 OLC A 1 1208 3 OLC OLC . J 5 HOH A 1 1301 7 HOH HOH . J 5 HOH A 2 1302 2 HOH HOH . J 5 HOH A 3 1303 17 HOH HOH . J 5 HOH A 4 1304 21 HOH HOH . J 5 HOH A 5 1305 10 HOH HOH . J 5 HOH A 6 1306 5 HOH HOH . J 5 HOH A 7 1307 22 HOH HOH . J 5 HOH A 8 1308 16 HOH HOH . J 5 HOH A 9 1309 13 HOH HOH . J 5 HOH A 10 1310 9 HOH HOH . J 5 HOH A 11 1311 20 HOH HOH . J 5 HOH A 12 1312 6 HOH HOH . J 5 HOH A 13 1313 23 HOH HOH . J 5 HOH A 14 1314 15 HOH HOH . J 5 HOH A 15 1315 12 HOH HOH . J 5 HOH A 16 1316 1 HOH HOH . J 5 HOH A 17 1317 24 HOH HOH . J 5 HOH A 18 1318 8 HOH HOH . J 5 HOH A 19 1319 3 HOH HOH . J 5 HOH A 20 1320 18 HOH HOH . J 5 HOH A 21 1321 11 HOH HOH . J 5 HOH A 22 1322 4 HOH HOH . J 5 HOH A 23 1323 14 HOH HOH . J 5 HOH A 24 1324 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . I 3 -21.032 -42.764 5.791 1 77.93 ? C18 OLC 1208 A 1 HETATM 2 C C10 OLC . . . I 3 -19.378 -34.904 3.64 1 63.43 ? C10 OLC 1208 A 1 HETATM 3 C C9 OLC . . . I 3 -19.46 -33.589 3.826 1 63.17 ? C9 OLC 1208 A 1 HETATM 4 C C17 OLC . . . I 3 -20.899 -42.009 4.486 1 69.41 ? C17 OLC 1208 A 1 HETATM 5 C C11 OLC . . . I 3 -18.824 -35.795 4.725 1 71.43 ? C11 OLC 1208 A 1 HETATM 6 C C8 OLC . . . I 3 -19.006 -32.963 5.124 1 63.65 ? C8 OLC 1208 A 1 HETATM 7 C C24 OLC . . . I 3 -18.671 -30.817 1.328 1 64.47 ? C24 OLC 1208 A 1 HETATM 8 C C16 OLC . . . I 3 -20.384 -40.597 4.73 1 63.58 ? C16 OLC 1208 A 1 HETATM 9 C C12 OLC . . . I 3 -19.943 -36.628 5.341 1 65.39 ? C12 OLC 1208 A 1 HETATM 10 C C7 OLC . . . I 3 -18.507 -31.551 4.848 1 62.26 ? C7 OLC 1208 A 1 HETATM 11 C C15 OLC . . . I 3 -20.183 -39.851 3.417 1 60.58 ? C15 OLC 1208 A 1 HETATM 12 C C13 OLC . . . I 3 -20.602 -37.548 4.32 1 56.77 ? C13 OLC 1208 A 1 HETATM 13 C C6 OLC . . . I 3 -18.557 -30.684 6.101 1 64.8 ? C6 OLC 1208 A 1 HETATM 14 C C14 OLC . . . I 3 -19.583 -38.474 3.667 1 58.09 ? C14 OLC 1208 A 1 HETATM 15 C C5 OLC . . . I 3 -17.234 -30.703 6.857 1 56.78 ? C5 OLC 1208 A 1 HETATM 16 C C4 OLC . . . I 3 -16.594 -29.318 6.868 1 50.66 ? C4 OLC 1208 A 1 HETATM 17 C C3 OLC . . . I 3 -16.225 -28.88 5.455 1 53.1 ? C3 OLC 1208 A 1 HETATM 18 C C2 OLC . . . I 3 -16.92 -27.581 5.068 1 70.96 ? C2 OLC 1208 A 1 HETATM 19 C C21 OLC . . . I 3 -17.382 -28.675 1.415 1 54.27 ? C21 OLC 1208 A 1 HETATM 20 C C1 OLC . . . I 3 -16.948 -27.486 3.562 1 64.26 ? C1 OLC 1208 A 1 HETATM 21 C C22 OLC . . . I 3 -18.522 -29.422 0.734 1 51.73 ? C22 OLC 1208 A 1 HETATM 22 O O19 OLC . . . I 3 -16.341 -26.602 2.979 1 54.51 ? O19 OLC 1208 A 1 HETATM 23 O O25 OLC . . . I 3 -19.739 -31.503 0.663 1 57.58 ? O25 OLC 1208 A 1 HETATM 24 O O23 OLC . . . I 3 -19.743 -28.697 0.915 1 64.1 ? O23 OLC 1208 A 1 HETATM 25 O O20 OLC . . . I 3 -17.697 -28.464 2.789 1 54.77 ? O20 OLC 1208 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #