data_5GN0 # _model_server_result.job_id -Z9gP3r7EQdgfeRzPRdrdw _model_server_result.datetime_utc '2024-12-26 19:50:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gn0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":501}' # _entry.id 5GN0 # _exptl.entry_id 5GN0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5GN0 _cell.length_a 79.66 _cell.length_b 120.9 _cell.length_c 196.58 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GN0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 ? dimeric 2 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,N 1 1 B,G,I,J,O 2 1 C,F,K,L,P,R 3 1 D,H,M,Q 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 K N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 158 _struct_conn.ptnr1_auth_asym_id D _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 360 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id M _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id PLM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id D _struct_conn.ptnr2_auth_comp_id PLM _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.28 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 5GN0 _atom_sites.fract_transf_matrix[1][1] 0.012553 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005087 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 CIT B 1 501 2 CIT CIT . J 4 PLM B 1 502 1 PLM PLM . K 3 CIT C 1 501 1 CIT CIT . L 4 PLM C 1 502 3 PLM PLM . M 4 PLM D 1 501 4 PLM PLM . N 5 HOH A 1 501 101 HOH HOH . N 5 HOH A 2 502 116 HOH HOH . N 5 HOH A 3 503 132 HOH HOH . N 5 HOH A 4 504 11 HOH HOH . N 5 HOH A 5 505 12 HOH HOH . O 5 HOH B 1 601 14 HOH HOH . O 5 HOH B 2 602 51 HOH HOH . O 5 HOH B 3 603 165 HOH HOH . O 5 HOH B 4 604 57 HOH HOH . O 5 HOH B 5 605 88 HOH HOH . O 5 HOH B 6 606 145 HOH HOH . O 5 HOH B 7 607 5 HOH HOH . P 5 HOH C 1 601 46 HOH HOH . P 5 HOH C 2 602 124 HOH HOH . P 5 HOH C 3 603 35 HOH HOH . P 5 HOH C 4 604 15 HOH HOH . Q 5 HOH D 1 601 1 HOH HOH . Q 5 HOH D 2 602 40 HOH HOH . R 5 HOH F 1 101 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . K 3 -9.705 51.973 184.846 1 62.26 ? C1 CIT 501 C 1 HETATM 2 O O1 CIT . . . K 3 -9.049 53.028 184.56 1 54.63 ? O1 CIT 501 C 1 HETATM 3 O O2 CIT . . . K 3 -9.12 50.991 185.422 1 60.66 ? O2 CIT 501 C 1 HETATM 4 C C2 CIT . . . K 3 -11.233 51.836 184.518 1 55.73 ? C2 CIT 501 C 1 HETATM 5 C C3 CIT . . . K 3 -11.989 53.072 183.97 1 46.22 ? C3 CIT 501 C 1 HETATM 6 O O7 CIT . . . K 3 -11.989 53.068 182.564 1 37.75 ? O7 CIT 501 C 1 HETATM 7 C C4 CIT . . . K 3 -13.493 53.127 184.316 1 46.21 ? C4 CIT 501 C 1 HETATM 8 C C5 CIT . . . K 3 -14.473 52.972 183.126 1 44.46 ? C5 CIT 501 C 1 HETATM 9 O O3 CIT . . . K 3 -14.354 51.873 182.455 1 34.74 ? O3 CIT 501 C 1 HETATM 10 O O4 CIT . . . K 3 -15.339 53.939 182.911 1 34.21 ? O4 CIT 501 C 1 HETATM 11 C C6 CIT . . . K 3 -11.181 54.232 184.493 1 45.92 ? C6 CIT 501 C 1 HETATM 12 O O5 CIT . . . K 3 -10.672 55.031 183.623 1 40.05 ? O5 CIT 501 C 1 HETATM 13 O O6 CIT . . . K 3 -11 54.252 185.791 1 41.87 ? O6 CIT 501 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 13 #