data_5GN5 # _model_server_result.job_id E3450g1hyTUGl-QukNENmQ _model_server_result.datetime_utc '2025-01-19 03:28:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gn5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":601}' # _entry.id 5GN5 # _exptl.entry_id 5GN5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 382.41 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[[4-(4-methoxyphenyl)piperazin-1-yl]methyl]-7,8-bis(oxidanyl)chromen-2-one _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.01 _cell.angle_gamma 90 _cell.entry_id 5GN5 _cell.length_a 121.03 _cell.length_b 63.205 _cell.length_c 154.848 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GN5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C21 H22 N2 O5' _chem_comp.formula_weight 382.41 _chem_comp.id 6XZ _chem_comp.mon_nstd_flag . _chem_comp.name 4-[[4-(4-methoxyphenyl)piperazin-1-yl]methyl]-7,8-bis(oxidanyl)chromen-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAQ CAA 6XZ sing 1 n n OAQ CAS 6XZ sing 2 n n CAF CAS 6XZ doub 3 n y CAF CAH 6XZ sing 4 n y CAS CAE 6XZ sing 5 n y CAH CAU 6XZ doub 6 n y CAE CAG 6XZ doub 7 n y CAU CAG 6XZ sing 8 n y CAU NBB 6XZ sing 9 n n NBB CAO 6XZ sing 10 n n NBB CAN 6XZ sing 11 n n CAO CAM 6XZ sing 12 n n CAN CAL 6XZ sing 13 n n CAM NBA 6XZ sing 14 n n CAL NBA 6XZ sing 15 n n NBA CAP 6XZ sing 16 n n CAP CAV 6XZ sing 17 n n CAK CAV 6XZ doub 18 n n CAK CAX 6XZ sing 19 n n CAV CAY 6XZ sing 20 n n OAB CAX 6XZ doub 21 n n CAX OAR 6XZ sing 22 n n CAY CAJ 6XZ doub 23 n y CAY CAZ 6XZ sing 24 n y CAJ CAI 6XZ sing 25 n y OAR CAZ 6XZ sing 26 n n CAZ CAW 6XZ doub 27 n y CAI CAT 6XZ doub 28 n y CAW CAT 6XZ sing 29 n y CAW OAD 6XZ sing 30 n n CAT OAC 6XZ sing 31 n n CAA H1 6XZ sing 32 n n CAA H2 6XZ sing 33 n n CAA H3 6XZ sing 34 n n CAF H4 6XZ sing 35 n n CAH H5 6XZ sing 36 n n CAE H6 6XZ sing 37 n n CAG H7 6XZ sing 38 n n CAO H8 6XZ sing 39 n n CAO H9 6XZ sing 40 n n CAM H10 6XZ sing 41 n n CAM H11 6XZ sing 42 n n CAN H12 6XZ sing 43 n n CAN H13 6XZ sing 44 n n CAL H14 6XZ sing 45 n n CAL H15 6XZ sing 46 n n CAP H17 6XZ sing 47 n n CAP H18 6XZ sing 48 n n CAK H19 6XZ sing 49 n n CAJ H20 6XZ sing 50 n n CAI H21 6XZ sing 51 n n OAC H22 6XZ sing 52 n n OAD H23 6XZ sing 53 n n # _atom_sites.entry_id 5GN5 _atom_sites.fract_transf_matrix[1][1] 0.008262 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000002 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015822 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006458 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 6XZ A 1 601 601 6XZ DRG . F 3 GOL A 1 602 701 GOL GOL . G 2 6XZ B 1 601 601 6XZ DRG . H 3 GOL B 1 602 701 GOL GOL . I 2 6XZ C 1 601 601 6XZ DRG . J 3 GOL C 1 602 701 GOL GOL . K 2 6XZ D 1 601 601 6XZ DRG . L 3 GOL D 1 602 701 GOL GOL . M 4 HOH A 1 701 4 HOH HOH . M 4 HOH A 2 702 108 HOH HOH . M 4 HOH A 3 703 26 HOH HOH . M 4 HOH A 4 704 107 HOH HOH . M 4 HOH A 5 705 111 HOH HOH . M 4 HOH A 6 706 32 HOH HOH . M 4 HOH A 7 707 17 HOH HOH . M 4 HOH A 8 708 28 HOH HOH . M 4 HOH A 9 709 50 HOH HOH . M 4 HOH A 10 710 34 HOH HOH . M 4 HOH A 11 711 79 HOH HOH . M 4 HOH A 12 712 41 HOH HOH . M 4 HOH A 13 713 125 HOH HOH . M 4 HOH A 14 714 106 HOH HOH . M 4 HOH A 15 715 49 HOH HOH . M 4 HOH A 16 716 130 HOH HOH . M 4 HOH A 17 717 51 HOH HOH . M 4 HOH A 18 718 124 HOH HOH . M 4 HOH A 19 719 82 HOH HOH . M 4 HOH A 20 720 23 HOH HOH . M 4 HOH A 21 721 80 HOH HOH . M 4 HOH A 22 722 86 HOH HOH . M 4 HOH A 23 723 144 HOH HOH . M 4 HOH A 24 724 171 HOH HOH . M 4 HOH A 25 725 98 HOH HOH . M 4 HOH A 26 726 7 HOH HOH . M 4 HOH A 27 727 143 HOH HOH . M 4 HOH A 28 728 87 HOH HOH . M 4 HOH A 29 729 46 HOH HOH . M 4 HOH A 30 730 1 HOH HOH . M 4 HOH A 31 731 29 HOH HOH . M 4 HOH A 32 732 76 HOH HOH . M 4 HOH A 33 733 117 HOH HOH . M 4 HOH A 34 734 72 HOH HOH . M 4 HOH A 35 735 74 HOH HOH . M 4 HOH A 36 736 174 HOH HOH . M 4 HOH A 37 737 22 HOH HOH . M 4 HOH A 38 738 89 HOH HOH . M 4 HOH A 39 739 66 HOH HOH . M 4 HOH A 40 740 16 HOH HOH . M 4 HOH A 41 741 67 HOH HOH . M 4 HOH A 42 742 167 HOH HOH . M 4 HOH A 43 743 31 HOH HOH . M 4 HOH A 44 744 39 HOH HOH . M 4 HOH A 45 745 196 HOH HOH . M 4 HOH A 46 746 77 HOH HOH . M 4 HOH A 47 747 35 HOH HOH . M 4 HOH A 48 748 150 HOH HOH . M 4 HOH A 49 749 135 HOH HOH . M 4 HOH A 50 750 140 HOH HOH . M 4 HOH A 51 751 114 HOH HOH . M 4 HOH A 52 752 103 HOH HOH . M 4 HOH A 53 753 195 HOH HOH . M 4 HOH A 54 754 186 HOH HOH . M 4 HOH A 55 755 170 HOH HOH . M 4 HOH A 56 756 154 HOH HOH . M 4 HOH A 57 757 164 HOH HOH . M 4 HOH A 58 758 136 HOH HOH . M 4 HOH A 59 759 119 HOH HOH . M 4 HOH A 60 760 15 HOH HOH . M 4 HOH A 61 761 185 HOH HOH . M 4 HOH A 62 762 198 HOH HOH . N 4 HOH B 1 701 134 HOH HOH . N 4 HOH B 2 702 193 HOH HOH . N 4 HOH B 3 703 138 HOH HOH . N 4 HOH B 4 704 118 HOH HOH . N 4 HOH B 5 705 40 HOH HOH . N 4 HOH B 6 706 95 HOH HOH . N 4 HOH B 7 707 181 HOH HOH . N 4 HOH B 8 708 10 HOH HOH . N 4 HOH B 9 709 70 HOH HOH . N 4 HOH B 10 710 189 HOH HOH . N 4 HOH B 11 711 6 HOH HOH . N 4 HOH B 12 712 194 HOH HOH . N 4 HOH B 13 713 71 HOH HOH . N 4 HOH B 14 714 133 HOH HOH . N 4 HOH B 15 715 60 HOH HOH . N 4 HOH B 16 716 190 HOH HOH . N 4 HOH B 17 717 139 HOH HOH . N 4 HOH B 18 718 128 HOH HOH . N 4 HOH B 19 719 163 HOH HOH . N 4 HOH B 20 720 177 HOH HOH . N 4 HOH B 21 721 180 HOH HOH . N 4 HOH B 22 722 116 HOH HOH . N 4 HOH B 23 723 69 HOH HOH . N 4 HOH B 24 724 57 HOH HOH . N 4 HOH B 25 725 62 HOH HOH . N 4 HOH B 26 726 159 HOH HOH . N 4 HOH B 27 727 172 HOH HOH . N 4 HOH B 28 728 96 HOH HOH . N 4 HOH B 29 729 182 HOH HOH . N 4 HOH B 30 730 160 HOH HOH . N 4 HOH B 31 731 58 HOH HOH . N 4 HOH B 32 732 179 HOH HOH . N 4 HOH B 33 733 141 HOH HOH . N 4 HOH B 34 734 161 HOH HOH . N 4 HOH B 35 735 166 HOH HOH . N 4 HOH B 36 736 129 HOH HOH . N 4 HOH B 37 737 44 HOH HOH . N 4 HOH B 38 738 184 HOH HOH . O 4 HOH C 1 701 37 HOH HOH . O 4 HOH C 2 702 81 HOH HOH . O 4 HOH C 3 703 8 HOH HOH . O 4 HOH C 4 704 25 HOH HOH . O 4 HOH C 5 705 168 HOH HOH . O 4 HOH C 6 706 9 HOH HOH . O 4 HOH C 7 707 11 HOH HOH . O 4 HOH C 8 708 30 HOH HOH . O 4 HOH C 9 709 176 HOH HOH . O 4 HOH C 10 710 152 HOH HOH . O 4 HOH C 11 711 61 HOH HOH . O 4 HOH C 12 712 175 HOH HOH . O 4 HOH C 13 713 68 HOH HOH . O 4 HOH C 14 714 145 HOH HOH . O 4 HOH C 15 715 191 HOH HOH . O 4 HOH C 16 716 94 HOH HOH . O 4 HOH C 17 717 165 HOH HOH . O 4 HOH C 18 718 88 HOH HOH . O 4 HOH C 19 719 90 HOH HOH . O 4 HOH C 20 720 43 HOH HOH . O 4 HOH C 21 721 55 HOH HOH . O 4 HOH C 22 722 2 HOH HOH . O 4 HOH C 23 723 173 HOH HOH . O 4 HOH C 24 724 113 HOH HOH . O 4 HOH C 25 725 75 HOH HOH . O 4 HOH C 26 726 47 HOH HOH . O 4 HOH C 27 727 123 HOH HOH . O 4 HOH C 28 728 91 HOH HOH . O 4 HOH C 29 729 192 HOH HOH . O 4 HOH C 30 730 21 HOH HOH . O 4 HOH C 31 731 92 HOH HOH . O 4 HOH C 32 732 178 HOH HOH . O 4 HOH C 33 733 65 HOH HOH . O 4 HOH C 34 734 73 HOH HOH . O 4 HOH C 35 735 162 HOH HOH . O 4 HOH C 36 736 156 HOH HOH . O 4 HOH C 37 737 188 HOH HOH . O 4 HOH C 38 738 18 HOH HOH . O 4 HOH C 39 739 148 HOH HOH . O 4 HOH C 40 740 27 HOH HOH . O 4 HOH C 41 741 157 HOH HOH . O 4 HOH C 42 742 158 HOH HOH . O 4 HOH C 43 743 20 HOH HOH . O 4 HOH C 44 744 149 HOH HOH . O 4 HOH C 45 745 54 HOH HOH . O 4 HOH C 46 746 85 HOH HOH . O 4 HOH C 47 747 42 HOH HOH . O 4 HOH C 48 748 110 HOH HOH . O 4 HOH C 49 749 99 HOH HOH . O 4 HOH C 50 750 183 HOH HOH . O 4 HOH C 51 751 64 HOH HOH . P 4 HOH D 1 701 3 HOH HOH . P 4 HOH D 2 702 12 HOH HOH . P 4 HOH D 3 703 36 HOH HOH . P 4 HOH D 4 704 48 HOH HOH . P 4 HOH D 5 705 105 HOH HOH . P 4 HOH D 6 706 101 HOH HOH . P 4 HOH D 7 707 63 HOH HOH . P 4 HOH D 8 708 121 HOH HOH . P 4 HOH D 9 709 120 HOH HOH . P 4 HOH D 10 710 104 HOH HOH . P 4 HOH D 11 711 56 HOH HOH . P 4 HOH D 12 712 137 HOH HOH . P 4 HOH D 13 713 5 HOH HOH . P 4 HOH D 14 714 78 HOH HOH . P 4 HOH D 15 715 147 HOH HOH . P 4 HOH D 16 716 97 HOH HOH . P 4 HOH D 17 717 169 HOH HOH . P 4 HOH D 18 718 112 HOH HOH . P 4 HOH D 19 719 53 HOH HOH . P 4 HOH D 20 720 146 HOH HOH . P 4 HOH D 21 721 131 HOH HOH . P 4 HOH D 22 722 24 HOH HOH . P 4 HOH D 23 723 84 HOH HOH . P 4 HOH D 24 724 115 HOH HOH . P 4 HOH D 25 725 122 HOH HOH . P 4 HOH D 26 726 33 HOH HOH . P 4 HOH D 27 727 52 HOH HOH . P 4 HOH D 28 728 127 HOH HOH . P 4 HOH D 29 729 19 HOH HOH . P 4 HOH D 30 730 153 HOH HOH . P 4 HOH D 31 731 126 HOH HOH . P 4 HOH D 32 732 83 HOH HOH . P 4 HOH D 33 733 100 HOH HOH . P 4 HOH D 34 734 132 HOH HOH . P 4 HOH D 35 735 197 HOH HOH . P 4 HOH D 36 736 151 HOH HOH . P 4 HOH D 37 737 142 HOH HOH . P 4 HOH D 38 738 59 HOH HOH . P 4 HOH D 39 739 45 HOH HOH . P 4 HOH D 40 740 93 HOH HOH . P 4 HOH D 41 741 38 HOH HOH . P 4 HOH D 42 742 13 HOH HOH . P 4 HOH D 43 743 155 HOH HOH . P 4 HOH D 44 744 187 HOH HOH . P 4 HOH D 45 745 109 HOH HOH . P 4 HOH D 46 746 14 HOH HOH . P 4 HOH D 47 747 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 6XZ . . . I 2 97.21 -5.495 78.945 1 94.93 ? CAA 6XZ 601 C 1 HETATM 2 O OAQ 6XZ . . . I 2 98.276 -4.528 79.084 1 96.37 ? OAQ 6XZ 601 C 1 HETATM 3 C CAS 6XZ . . . I 2 98.987 -4.395 77.924 1 102.37 ? CAS 6XZ 601 C 1 HETATM 4 C CAF 6XZ . . . I 2 98.372 -3.844 76.795 1 102.84 ? CAF 6XZ 601 C 1 HETATM 5 C CAH 6XZ . . . I 2 99.082 -3.715 75.603 1 102.24 ? CAH 6XZ 601 C 1 HETATM 6 C CAE 6XZ . . . I 2 100.329 -4.808 77.843 1 102.82 ? CAE 6XZ 601 C 1 HETATM 7 C CAG 6XZ . . . I 2 101.045 -4.672 76.644 1 101.25 ? CAG 6XZ 601 C 1 HETATM 8 C CAU 6XZ . . . I 2 100.407 -4.144 75.513 1 101.9 ? CAU 6XZ 601 C 1 HETATM 9 N NBB 6XZ . . . I 2 101.06 -3.975 74.345 1 104.43 ? NBB 6XZ 601 C 1 HETATM 10 C CAO 6XZ . . . I 2 101.38 -2.588 73.949 1 104.14 ? CAO 6XZ 601 C 1 HETATM 11 C CAM 6XZ . . . I 2 100.924 -2.262 72.614 1 99.7 ? CAM 6XZ 601 C 1 HETATM 12 C CAN 6XZ . . . I 2 101.62 -5.055 73.504 1 102.95 ? CAN 6XZ 601 C 1 HETATM 13 C CAL 6XZ . . . I 2 102.11 -4.415 72.152 1 99.09 ? CAL 6XZ 601 C 1 HETATM 14 N NBA 6XZ . . . I 2 101.279 -3.309 71.652 1 96.86 ? NBA 6XZ 601 C 1 HETATM 15 C CAP 6XZ . . . I 2 102.153 -2.727 70.593 1 94.82 ? CAP 6XZ 601 C 1 HETATM 16 C CAV 6XZ . . . I 2 101.792 -1.564 69.768 1 91.18 ? CAV 6XZ 601 C 1 HETATM 17 C CAK 6XZ . . . I 2 100.686 -0.704 69.962 1 89.2 ? CAK 6XZ 601 C 1 HETATM 18 C CAX 6XZ . . . I 2 100.427 0.447 69.203 1 83.33 ? CAX 6XZ 601 C 1 HETATM 19 O OAB 6XZ . . . I 2 99.443 1.135 69.49 1 73.38 ? OAB 6XZ 601 C 1 HETATM 20 O OAR 6XZ . . . I 2 101.27 0.78 68.178 1 84.25 ? OAR 6XZ 601 C 1 HETATM 21 C CAZ 6XZ . . . I 2 102.4 0.007 67.981 1 84.77 ? CAZ 6XZ 601 C 1 HETATM 22 C CAY 6XZ . . . I 2 102.677 -1.155 68.742 1 88.14 ? CAY 6XZ 601 C 1 HETATM 23 C CAJ 6XZ . . . I 2 103.878 -1.843 68.447 1 85.95 ? CAJ 6XZ 601 C 1 HETATM 24 C CAI 6XZ . . . I 2 104.756 -1.428 67.448 1 84.25 ? CAI 6XZ 601 C 1 HETATM 25 C CAT 6XZ . . . I 2 104.456 -0.294 66.708 1 82.89 ? CAT 6XZ 601 C 1 HETATM 26 O OAC 6XZ . . . I 2 105.322 0.108 65.736 1 83 ? OAC 6XZ 601 C 1 HETATM 27 C CAW 6XZ . . . I 2 103.267 0.425 66.986 1 80.53 ? CAW 6XZ 601 C 1 HETATM 28 O OAD 6XZ . . . I 2 102.897 1.549 66.323 1 72.12 ? OAD 6XZ 601 C 1 # _model_server_stats.io_time_ms 126 _model_server_stats.parse_time_ms 53 _model_server_stats.create_model_time_ms 91 _model_server_stats.query_time_ms 1334 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 28 #