data_5GN5
#
_model_server_result.job_id            lrUY_SSyqDsePxMHyxJavg 
_model_server_result.datetime_utc      '2025-01-19 03:25:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gn5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":602}' 
#
_entry.id    5GN5 
#
_exptl.entry_id    5GN5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.01 
_cell.angle_gamma         90 
_cell.entry_id            5GN5 
_cell.length_a            121.03 
_cell.length_b            63.205 
_cell.length_c            154.848 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GN5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 182 n n 
C1 C2 GOL sing 183 n n 
C1 H11 GOL sing 184 n n 
C1 H12 GOL sing 185 n n 
O1 HO1 GOL sing 186 n n 
C2 O2 GOL sing 187 n n 
C2 C3 GOL sing 188 n n 
C2 H2 GOL sing 189 n n 
O2 HO2 GOL sing 190 n n 
C3 O3 GOL sing 191 n n 
C3 H31 GOL sing 192 n n 
C3 H32 GOL sing 193 n n 
O3 HO3 GOL sing 194 n n 
#
_atom_sites.entry_id                     5GN5 
_atom_sites.fract_transf_matrix[1][1]    0.008262 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000002 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015822 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006458 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 6XZ A 1 601 601 6XZ DRG . 
F 3 GOL A 1 602 701 GOL GOL . 
G 2 6XZ B 1 601 601 6XZ DRG . 
H 3 GOL B 1 602 701 GOL GOL . 
I 2 6XZ C 1 601 601 6XZ DRG . 
J 3 GOL C 1 602 701 GOL GOL . 
K 2 6XZ D 1 601 601 6XZ DRG . 
L 3 GOL D 1 602 701 GOL GOL . 
M 4 HOH A 1 701 4 HOH HOH . 
M 4 HOH A 2 702 108 HOH HOH . 
M 4 HOH A 3 703 26 HOH HOH . 
M 4 HOH A 4 704 107 HOH HOH . 
M 4 HOH A 5 705 111 HOH HOH . 
M 4 HOH A 6 706 32 HOH HOH . 
M 4 HOH A 7 707 17 HOH HOH . 
M 4 HOH A 8 708 28 HOH HOH . 
M 4 HOH A 9 709 50 HOH HOH . 
M 4 HOH A 10 710 34 HOH HOH . 
M 4 HOH A 11 711 79 HOH HOH . 
M 4 HOH A 12 712 41 HOH HOH . 
M 4 HOH A 13 713 125 HOH HOH . 
M 4 HOH A 14 714 106 HOH HOH . 
M 4 HOH A 15 715 49 HOH HOH . 
M 4 HOH A 16 716 130 HOH HOH . 
M 4 HOH A 17 717 51 HOH HOH . 
M 4 HOH A 18 718 124 HOH HOH . 
M 4 HOH A 19 719 82 HOH HOH . 
M 4 HOH A 20 720 23 HOH HOH . 
M 4 HOH A 21 721 80 HOH HOH . 
M 4 HOH A 22 722 86 HOH HOH . 
M 4 HOH A 23 723 144 HOH HOH . 
M 4 HOH A 24 724 171 HOH HOH . 
M 4 HOH A 25 725 98 HOH HOH . 
M 4 HOH A 26 726 7 HOH HOH . 
M 4 HOH A 27 727 143 HOH HOH . 
M 4 HOH A 28 728 87 HOH HOH . 
M 4 HOH A 29 729 46 HOH HOH . 
M 4 HOH A 30 730 1 HOH HOH . 
M 4 HOH A 31 731 29 HOH HOH . 
M 4 HOH A 32 732 76 HOH HOH . 
M 4 HOH A 33 733 117 HOH HOH . 
M 4 HOH A 34 734 72 HOH HOH . 
M 4 HOH A 35 735 74 HOH HOH . 
M 4 HOH A 36 736 174 HOH HOH . 
M 4 HOH A 37 737 22 HOH HOH . 
M 4 HOH A 38 738 89 HOH HOH . 
M 4 HOH A 39 739 66 HOH HOH . 
M 4 HOH A 40 740 16 HOH HOH . 
M 4 HOH A 41 741 67 HOH HOH . 
M 4 HOH A 42 742 167 HOH HOH . 
M 4 HOH A 43 743 31 HOH HOH . 
M 4 HOH A 44 744 39 HOH HOH . 
M 4 HOH A 45 745 196 HOH HOH . 
M 4 HOH A 46 746 77 HOH HOH . 
M 4 HOH A 47 747 35 HOH HOH . 
M 4 HOH A 48 748 150 HOH HOH . 
M 4 HOH A 49 749 135 HOH HOH . 
M 4 HOH A 50 750 140 HOH HOH . 
M 4 HOH A 51 751 114 HOH HOH . 
M 4 HOH A 52 752 103 HOH HOH . 
M 4 HOH A 53 753 195 HOH HOH . 
M 4 HOH A 54 754 186 HOH HOH . 
M 4 HOH A 55 755 170 HOH HOH . 
M 4 HOH A 56 756 154 HOH HOH . 
M 4 HOH A 57 757 164 HOH HOH . 
M 4 HOH A 58 758 136 HOH HOH . 
M 4 HOH A 59 759 119 HOH HOH . 
M 4 HOH A 60 760 15 HOH HOH . 
M 4 HOH A 61 761 185 HOH HOH . 
M 4 HOH A 62 762 198 HOH HOH . 
N 4 HOH B 1 701 134 HOH HOH . 
N 4 HOH B 2 702 193 HOH HOH . 
N 4 HOH B 3 703 138 HOH HOH . 
N 4 HOH B 4 704 118 HOH HOH . 
N 4 HOH B 5 705 40 HOH HOH . 
N 4 HOH B 6 706 95 HOH HOH . 
N 4 HOH B 7 707 181 HOH HOH . 
N 4 HOH B 8 708 10 HOH HOH . 
N 4 HOH B 9 709 70 HOH HOH . 
N 4 HOH B 10 710 189 HOH HOH . 
N 4 HOH B 11 711 6 HOH HOH . 
N 4 HOH B 12 712 194 HOH HOH . 
N 4 HOH B 13 713 71 HOH HOH . 
N 4 HOH B 14 714 133 HOH HOH . 
N 4 HOH B 15 715 60 HOH HOH . 
N 4 HOH B 16 716 190 HOH HOH . 
N 4 HOH B 17 717 139 HOH HOH . 
N 4 HOH B 18 718 128 HOH HOH . 
N 4 HOH B 19 719 163 HOH HOH . 
N 4 HOH B 20 720 177 HOH HOH . 
N 4 HOH B 21 721 180 HOH HOH . 
N 4 HOH B 22 722 116 HOH HOH . 
N 4 HOH B 23 723 69 HOH HOH . 
N 4 HOH B 24 724 57 HOH HOH . 
N 4 HOH B 25 725 62 HOH HOH . 
N 4 HOH B 26 726 159 HOH HOH . 
N 4 HOH B 27 727 172 HOH HOH . 
N 4 HOH B 28 728 96 HOH HOH . 
N 4 HOH B 29 729 182 HOH HOH . 
N 4 HOH B 30 730 160 HOH HOH . 
N 4 HOH B 31 731 58 HOH HOH . 
N 4 HOH B 32 732 179 HOH HOH . 
N 4 HOH B 33 733 141 HOH HOH . 
N 4 HOH B 34 734 161 HOH HOH . 
N 4 HOH B 35 735 166 HOH HOH . 
N 4 HOH B 36 736 129 HOH HOH . 
N 4 HOH B 37 737 44 HOH HOH . 
N 4 HOH B 38 738 184 HOH HOH . 
O 4 HOH C 1 701 37 HOH HOH . 
O 4 HOH C 2 702 81 HOH HOH . 
O 4 HOH C 3 703 8 HOH HOH . 
O 4 HOH C 4 704 25 HOH HOH . 
O 4 HOH C 5 705 168 HOH HOH . 
O 4 HOH C 6 706 9 HOH HOH . 
O 4 HOH C 7 707 11 HOH HOH . 
O 4 HOH C 8 708 30 HOH HOH . 
O 4 HOH C 9 709 176 HOH HOH . 
O 4 HOH C 10 710 152 HOH HOH . 
O 4 HOH C 11 711 61 HOH HOH . 
O 4 HOH C 12 712 175 HOH HOH . 
O 4 HOH C 13 713 68 HOH HOH . 
O 4 HOH C 14 714 145 HOH HOH . 
O 4 HOH C 15 715 191 HOH HOH . 
O 4 HOH C 16 716 94 HOH HOH . 
O 4 HOH C 17 717 165 HOH HOH . 
O 4 HOH C 18 718 88 HOH HOH . 
O 4 HOH C 19 719 90 HOH HOH . 
O 4 HOH C 20 720 43 HOH HOH . 
O 4 HOH C 21 721 55 HOH HOH . 
O 4 HOH C 22 722 2 HOH HOH . 
O 4 HOH C 23 723 173 HOH HOH . 
O 4 HOH C 24 724 113 HOH HOH . 
O 4 HOH C 25 725 75 HOH HOH . 
O 4 HOH C 26 726 47 HOH HOH . 
O 4 HOH C 27 727 123 HOH HOH . 
O 4 HOH C 28 728 91 HOH HOH . 
O 4 HOH C 29 729 192 HOH HOH . 
O 4 HOH C 30 730 21 HOH HOH . 
O 4 HOH C 31 731 92 HOH HOH . 
O 4 HOH C 32 732 178 HOH HOH . 
O 4 HOH C 33 733 65 HOH HOH . 
O 4 HOH C 34 734 73 HOH HOH . 
O 4 HOH C 35 735 162 HOH HOH . 
O 4 HOH C 36 736 156 HOH HOH . 
O 4 HOH C 37 737 188 HOH HOH . 
O 4 HOH C 38 738 18 HOH HOH . 
O 4 HOH C 39 739 148 HOH HOH . 
O 4 HOH C 40 740 27 HOH HOH . 
O 4 HOH C 41 741 157 HOH HOH . 
O 4 HOH C 42 742 158 HOH HOH . 
O 4 HOH C 43 743 20 HOH HOH . 
O 4 HOH C 44 744 149 HOH HOH . 
O 4 HOH C 45 745 54 HOH HOH . 
O 4 HOH C 46 746 85 HOH HOH . 
O 4 HOH C 47 747 42 HOH HOH . 
O 4 HOH C 48 748 110 HOH HOH . 
O 4 HOH C 49 749 99 HOH HOH . 
O 4 HOH C 50 750 183 HOH HOH . 
O 4 HOH C 51 751 64 HOH HOH . 
P 4 HOH D 1 701 3 HOH HOH . 
P 4 HOH D 2 702 12 HOH HOH . 
P 4 HOH D 3 703 36 HOH HOH . 
P 4 HOH D 4 704 48 HOH HOH . 
P 4 HOH D 5 705 105 HOH HOH . 
P 4 HOH D 6 706 101 HOH HOH . 
P 4 HOH D 7 707 63 HOH HOH . 
P 4 HOH D 8 708 121 HOH HOH . 
P 4 HOH D 9 709 120 HOH HOH . 
P 4 HOH D 10 710 104 HOH HOH . 
P 4 HOH D 11 711 56 HOH HOH . 
P 4 HOH D 12 712 137 HOH HOH . 
P 4 HOH D 13 713 5 HOH HOH . 
P 4 HOH D 14 714 78 HOH HOH . 
P 4 HOH D 15 715 147 HOH HOH . 
P 4 HOH D 16 716 97 HOH HOH . 
P 4 HOH D 17 717 169 HOH HOH . 
P 4 HOH D 18 718 112 HOH HOH . 
P 4 HOH D 19 719 53 HOH HOH . 
P 4 HOH D 20 720 146 HOH HOH . 
P 4 HOH D 21 721 131 HOH HOH . 
P 4 HOH D 22 722 24 HOH HOH . 
P 4 HOH D 23 723 84 HOH HOH . 
P 4 HOH D 24 724 115 HOH HOH . 
P 4 HOH D 25 725 122 HOH HOH . 
P 4 HOH D 26 726 33 HOH HOH . 
P 4 HOH D 27 727 52 HOH HOH . 
P 4 HOH D 28 728 127 HOH HOH . 
P 4 HOH D 29 729 19 HOH HOH . 
P 4 HOH D 30 730 153 HOH HOH . 
P 4 HOH D 31 731 126 HOH HOH . 
P 4 HOH D 32 732 83 HOH HOH . 
P 4 HOH D 33 733 100 HOH HOH . 
P 4 HOH D 34 734 132 HOH HOH . 
P 4 HOH D 35 735 197 HOH HOH . 
P 4 HOH D 36 736 151 HOH HOH . 
P 4 HOH D 37 737 142 HOH HOH . 
P 4 HOH D 38 738 59 HOH HOH . 
P 4 HOH D 39 739 45 HOH HOH . 
P 4 HOH D 40 740 93 HOH HOH . 
P 4 HOH D 41 741 38 HOH HOH . 
P 4 HOH D 42 742 13 HOH HOH . 
P 4 HOH D 43 743 155 HOH HOH . 
P 4 HOH D 44 744 187 HOH HOH . 
P 4 HOH D 45 745 109 HOH HOH . 
P 4 HOH D 46 746 14 HOH HOH . 
P 4 HOH D 47 747 102 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . L 3 53.717 -26.526 57.859 1 63.2 ? C1 GOL 602 D 1 
HETATM 2 O O1 GOL . . . L 3 54.157 -25.445 58.686 1 63.18 ? O1 GOL 602 D 1 
HETATM 3 C C2 GOL . . . L 3 54.568 -26.588 56.605 1 63 ? C2 GOL 602 D 1 
HETATM 4 O O2 GOL . . . L 3 55.887 -26.11 56.893 1 71.33 ? O2 GOL 602 D 1 
HETATM 5 C C3 GOL . . . L 3 54.7 -28.001 56.086 1 60 ? C3 GOL 602 D 1 
HETATM 6 O O3 GOL . . . L 3 55.551 -27.996 54.937 1 60.33 ? O3 GOL 602 D 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#