data_5GN6
#
_model_server_result.job_id            PfAMI7Uk5y69vk2WQfN6Dw 
_model_server_result.datetime_utc      '2024-11-22 15:00:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gn6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":601}' 
#
_entry.id    5GN6 
#
_exptl.entry_id    5GN6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              234.248 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-butyl-7,8-bis(oxidanyl)chromen-2-one 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5GN6 
_cell.length_a            62.424 
_cell.length_b            122.04 
_cell.length_c            154.735 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GN6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C13 H14 O4' 
_chem_comp.formula_weight    234.248 
_chem_comp.id                6Y0 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-butyl-7,8-bis(oxidanyl)chromen-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAC CAL 6Y0 sing 1 n n 
OAD CAN 6Y0 sing 2 n n 
CAL CAN 6Y0 doub 3 n y 
CAL CAE 6Y0 sing 4 n y 
CAN CAQ 6Y0 sing 5 n y 
CAE CAF 6Y0 doub 6 n y 
CAQ OAK 6Y0 sing 7 n n 
CAQ CAP 6Y0 doub 8 n y 
OAK CAO 6Y0 sing 9 n n 
CAF CAP 6Y0 sing 10 n y 
CAP CAM 6Y0 sing 11 n n 
CAO OAB 6Y0 doub 12 n n 
CAO CAG 6Y0 sing 13 n n 
CAG CAM 6Y0 doub 14 n n 
CAM CAJ 6Y0 sing 15 n n 
CAI CAJ 6Y0 sing 16 n n 
CAI CAH 6Y0 sing 17 n n 
CAA CAH 6Y0 sing 18 n n 
CAA H1 6Y0 sing 19 n n 
CAA H2 6Y0 sing 20 n n 
CAA H3 6Y0 sing 21 n n 
CAH H4 6Y0 sing 22 n n 
CAH H5 6Y0 sing 23 n n 
CAI H6 6Y0 sing 24 n n 
CAI H7 6Y0 sing 25 n n 
CAJ H8 6Y0 sing 26 n n 
CAJ H9 6Y0 sing 27 n n 
CAG H10 6Y0 sing 28 n n 
CAF H11 6Y0 sing 29 n n 
CAE H12 6Y0 sing 30 n n 
OAC H13 6Y0 sing 31 n n 
OAD H14 6Y0 sing 32 n n 
#
_atom_sites.entry_id                     5GN6 
_atom_sites.fract_transf_matrix[1][1]    0.016019 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008194 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006463 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 6Y0 A 1 601 601 6Y0 DRG . 
F 3 GOL A 1 602 701 GOL GOL . 
G 2 6Y0 B 1 601 601 6Y0 DRG . 
H 3 GOL B 1 602 701 GOL GOL . 
I 2 6Y0 C 1 601 601 6Y0 DRG . 
J 3 GOL C 1 602 701 GOL GOL . 
K 2 6Y0 D 1 601 601 6Y0 DRG . 
L 3 GOL D 1 602 701 GOL GOL . 
M 4 HOH A 1 701 54 HOH HOH . 
M 4 HOH A 2 702 11 HOH HOH . 
M 4 HOH A 3 703 106 HOH HOH . 
M 4 HOH A 4 704 80 HOH HOH . 
M 4 HOH A 5 705 108 HOH HOH . 
M 4 HOH A 6 706 100 HOH HOH . 
M 4 HOH A 7 707 12 HOH HOH . 
M 4 HOH A 8 708 21 HOH HOH . 
M 4 HOH A 9 709 145 HOH HOH . 
M 4 HOH A 10 710 31 HOH HOH . 
M 4 HOH A 11 711 37 HOH HOH . 
M 4 HOH A 12 712 56 HOH HOH . 
M 4 HOH A 13 713 1 HOH HOH . 
M 4 HOH A 14 714 13 HOH HOH . 
M 4 HOH A 15 715 10 HOH HOH . 
M 4 HOH A 16 716 103 HOH HOH . 
M 4 HOH A 17 717 58 HOH HOH . 
M 4 HOH A 18 718 42 HOH HOH . 
M 4 HOH A 19 719 75 HOH HOH . 
M 4 HOH A 20 720 26 HOH HOH . 
M 4 HOH A 21 721 78 HOH HOH . 
M 4 HOH A 22 722 67 HOH HOH . 
M 4 HOH A 23 723 164 HOH HOH . 
M 4 HOH A 24 724 6 HOH HOH . 
M 4 HOH A 25 725 24 HOH HOH . 
M 4 HOH A 26 726 101 HOH HOH . 
M 4 HOH A 27 727 147 HOH HOH . 
M 4 HOH A 28 728 81 HOH HOH . 
M 4 HOH A 29 729 47 HOH HOH . 
M 4 HOH A 30 730 35 HOH HOH . 
M 4 HOH A 31 731 23 HOH HOH . 
M 4 HOH A 32 732 150 HOH HOH . 
M 4 HOH A 33 733 133 HOH HOH . 
M 4 HOH A 34 734 134 HOH HOH . 
M 4 HOH A 35 735 77 HOH HOH . 
M 4 HOH A 36 736 72 HOH HOH . 
M 4 HOH A 37 737 105 HOH HOH . 
M 4 HOH A 38 738 136 HOH HOH . 
M 4 HOH A 39 739 115 HOH HOH . 
M 4 HOH A 40 740 83 HOH HOH . 
M 4 HOH A 41 741 130 HOH HOH . 
M 4 HOH A 42 742 73 HOH HOH . 
M 4 HOH A 43 743 98 HOH HOH . 
M 4 HOH A 44 744 129 HOH HOH . 
M 4 HOH A 45 745 66 HOH HOH . 
M 4 HOH A 46 746 96 HOH HOH . 
M 4 HOH A 47 747 124 HOH HOH . 
M 4 HOH A 48 748 135 HOH HOH . 
M 4 HOH A 49 749 65 HOH HOH . 
M 4 HOH A 50 750 123 HOH HOH . 
M 4 HOH A 51 751 36 HOH HOH . 
M 4 HOH A 52 752 132 HOH HOH . 
M 4 HOH A 53 753 110 HOH HOH . 
M 4 HOH A 54 754 146 HOH HOH . 
M 4 HOH A 55 755 84 HOH HOH . 
M 4 HOH A 56 756 95 HOH HOH . 
M 4 HOH A 57 757 59 HOH HOH . 
M 4 HOH A 58 758 131 HOH HOH . 
N 4 HOH B 1 701 112 HOH HOH . 
N 4 HOH B 2 702 161 HOH HOH . 
N 4 HOH B 3 703 50 HOH HOH . 
N 4 HOH B 4 704 2 HOH HOH . 
N 4 HOH B 5 705 20 HOH HOH . 
N 4 HOH B 6 706 149 HOH HOH . 
N 4 HOH B 7 707 90 HOH HOH . 
N 4 HOH B 8 708 156 HOH HOH . 
N 4 HOH B 9 709 148 HOH HOH . 
N 4 HOH B 10 710 9 HOH HOH . 
N 4 HOH B 11 711 74 HOH HOH . 
N 4 HOH B 12 712 158 HOH HOH . 
N 4 HOH B 13 713 107 HOH HOH . 
N 4 HOH B 14 714 162 HOH HOH . 
N 4 HOH B 15 715 169 HOH HOH . 
N 4 HOH B 16 716 33 HOH HOH . 
N 4 HOH B 17 717 43 HOH HOH . 
N 4 HOH B 18 718 76 HOH HOH . 
N 4 HOH B 19 719 160 HOH HOH . 
N 4 HOH B 20 720 38 HOH HOH . 
N 4 HOH B 21 721 49 HOH HOH . 
N 4 HOH B 22 722 102 HOH HOH . 
N 4 HOH B 23 723 39 HOH HOH . 
N 4 HOH B 24 724 22 HOH HOH . 
N 4 HOH B 25 725 91 HOH HOH . 
N 4 HOH B 26 726 167 HOH HOH . 
N 4 HOH B 27 727 88 HOH HOH . 
N 4 HOH B 28 728 153 HOH HOH . 
N 4 HOH B 29 729 62 HOH HOH . 
N 4 HOH B 30 730 154 HOH HOH . 
N 4 HOH B 31 731 109 HOH HOH . 
N 4 HOH B 32 732 82 HOH HOH . 
O 4 HOH C 1 701 104 HOH HOH . 
O 4 HOH C 2 702 16 HOH HOH . 
O 4 HOH C 3 703 165 HOH HOH . 
O 4 HOH C 4 704 163 HOH HOH . 
O 4 HOH C 5 705 97 HOH HOH . 
O 4 HOH C 6 706 41 HOH HOH . 
O 4 HOH C 7 707 152 HOH HOH . 
O 4 HOH C 8 708 17 HOH HOH . 
O 4 HOH C 9 709 8 HOH HOH . 
O 4 HOH C 10 710 128 HOH HOH . 
O 4 HOH C 11 711 45 HOH HOH . 
O 4 HOH C 12 712 25 HOH HOH . 
O 4 HOH C 13 713 15 HOH HOH . 
O 4 HOH C 14 714 40 HOH HOH . 
O 4 HOH C 15 715 14 HOH HOH . 
O 4 HOH C 16 716 27 HOH HOH . 
O 4 HOH C 17 717 64 HOH HOH . 
O 4 HOH C 18 718 4 HOH HOH . 
O 4 HOH C 19 719 60 HOH HOH . 
O 4 HOH C 20 720 137 HOH HOH . 
O 4 HOH C 21 721 151 HOH HOH . 
O 4 HOH C 22 722 157 HOH HOH . 
O 4 HOH C 23 723 111 HOH HOH . 
O 4 HOH C 24 724 140 HOH HOH . 
O 4 HOH C 25 725 46 HOH HOH . 
O 4 HOH C 26 726 7 HOH HOH . 
O 4 HOH C 27 727 19 HOH HOH . 
O 4 HOH C 28 728 34 HOH HOH . 
O 4 HOH C 29 729 144 HOH HOH . 
O 4 HOH C 30 730 141 HOH HOH . 
O 4 HOH C 31 731 55 HOH HOH . 
O 4 HOH C 32 732 61 HOH HOH . 
O 4 HOH C 33 733 139 HOH HOH . 
O 4 HOH C 34 734 126 HOH HOH . 
O 4 HOH C 35 735 18 HOH HOH . 
O 4 HOH C 36 736 117 HOH HOH . 
O 4 HOH C 37 737 122 HOH HOH . 
O 4 HOH C 38 738 125 HOH HOH . 
O 4 HOH C 39 739 99 HOH HOH . 
O 4 HOH C 40 740 113 HOH HOH . 
O 4 HOH C 41 741 44 HOH HOH . 
O 4 HOH C 42 742 138 HOH HOH . 
O 4 HOH C 43 743 70 HOH HOH . 
O 4 HOH C 44 744 94 HOH HOH . 
P 4 HOH D 1 701 63 HOH HOH . 
P 4 HOH D 2 702 51 HOH HOH . 
P 4 HOH D 3 703 28 HOH HOH . 
P 4 HOH D 4 704 69 HOH HOH . 
P 4 HOH D 5 705 87 HOH HOH . 
P 4 HOH D 6 706 79 HOH HOH . 
P 4 HOH D 7 707 3 HOH HOH . 
P 4 HOH D 8 708 52 HOH HOH . 
P 4 HOH D 9 709 168 HOH HOH . 
P 4 HOH D 10 710 5 HOH HOH . 
P 4 HOH D 11 711 68 HOH HOH . 
P 4 HOH D 12 712 89 HOH HOH . 
P 4 HOH D 13 713 155 HOH HOH . 
P 4 HOH D 14 714 53 HOH HOH . 
P 4 HOH D 15 715 30 HOH HOH . 
P 4 HOH D 16 716 29 HOH HOH . 
P 4 HOH D 17 717 121 HOH HOH . 
P 4 HOH D 18 718 32 HOH HOH . 
P 4 HOH D 19 719 48 HOH HOH . 
P 4 HOH D 20 720 118 HOH HOH . 
P 4 HOH D 21 721 159 HOH HOH . 
P 4 HOH D 22 722 85 HOH HOH . 
P 4 HOH D 23 723 57 HOH HOH . 
P 4 HOH D 24 724 142 HOH HOH . 
P 4 HOH D 25 725 92 HOH HOH . 
P 4 HOH D 26 726 166 HOH HOH . 
P 4 HOH D 27 727 127 HOH HOH . 
P 4 HOH D 28 728 119 HOH HOH . 
P 4 HOH D 29 729 114 HOH HOH . 
P 4 HOH D 30 730 120 HOH HOH . 
P 4 HOH D 31 731 143 HOH HOH . 
P 4 HOH D 32 732 116 HOH HOH . 
P 4 HOH D 33 733 86 HOH HOH . 
P 4 HOH D 34 734 93 HOH HOH . 
P 4 HOH D 35 735 71 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA 6Y0 . . . E 2 -7.662 5.37 33.946 1 44.3 ? CAA 6Y0 601 A 1 
HETATM 2 C CAH 6Y0 . . . E 2 -6.186 5.788 34.179 1 46.43 ? CAH 6Y0 601 A 1 
HETATM 3 C CAI 6Y0 . . . E 2 -5.359 5.547 32.913 1 48.11 ? CAI 6Y0 601 A 1 
HETATM 4 C CAJ 6Y0 . . . E 2 -3.863 5.413 33.245 1 47.91 ? CAJ 6Y0 601 A 1 
HETATM 5 C CAM 6Y0 . . . E 2 -3.084 5.743 32.095 1 49.69 ? CAM 6Y0 601 A 1 
HETATM 6 C CAG 6Y0 . . . E 2 -2.333 6.938 32.094 1 49.79 ? CAG 6Y0 601 A 1 
HETATM 7 C CAO 6Y0 . . . E 2 -1.558 7.328 30.983 1 45.6 ? CAO 6Y0 601 A 1 
HETATM 8 O OAB 6Y0 . . . E 2 -0.946 8.391 31.048 1 44.63 ? OAB 6Y0 601 A 1 
HETATM 9 O OAK 6Y0 . . . E 2 -1.426 6.514 29.9 1 41.02 ? OAK 6Y0 601 A 1 
HETATM 10 C CAQ 6Y0 . . . E 2 -2.09 5.314 29.891 1 44.36 ? CAQ 6Y0 601 A 1 
HETATM 11 C CAP 6Y0 . . . E 2 -2.941 4.904 30.958 1 45.55 ? CAP 6Y0 601 A 1 
HETATM 12 C CAF 6Y0 . . . E 2 -3.586 3.643 30.817 1 42.07 ? CAF 6Y0 601 A 1 
HETATM 13 C CAE 6Y0 . . . E 2 -3.392 2.844 29.68 1 38.77 ? CAE 6Y0 601 A 1 
HETATM 14 C CAL 6Y0 . . . E 2 -2.55 3.26 28.647 1 40.74 ? CAL 6Y0 601 A 1 
HETATM 15 O OAC 6Y0 . . . E 2 -2.349 2.484 27.548 1 41.41 ? OAC 6Y0 601 A 1 
HETATM 16 C CAN 6Y0 . . . E 2 -1.889 4.508 28.76 1 44.26 ? CAN 6Y0 601 A 1 
HETATM 17 O OAD 6Y0 . . . E 2 -1.054 4.995 27.792 1 38.84 ? OAD 6Y0 601 A 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           17 
#