data_5GN7 # _model_server_result.job_id 02yTIDFioqoBvlg-3nLIXA _model_server_result.datetime_utc '2024-11-22 20:48:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gn7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":503}' # _entry.id 5GN7 # _exptl.entry_id 5GN7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 382.41 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[[4-(4-methoxyphenyl)piperazin-1-yl]methyl]-7,8-bis(oxidanyl)chromen-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.7 _cell.angle_gamma 90 _cell.entry_id 5GN7 _cell.length_a 151.312 _cell.length_b 222.726 _cell.length_c 63.165 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GN7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J 1 1 C,D,K,L,M,N,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 123 A GLU 123 1_555 E FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc2 A OE2 GLU 123 A GLU 123 1_555 E FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc3 A OE1 GLU 162 A GLU 162 1_555 E FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc4 A OE2 GLU 162 A GLU 162 1_555 F FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc5 A OE1 GLU 213 A GLU 213 1_555 F FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc6 A OE2 GLU 213 A GLU 213 1_555 F FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc7 A OE1 GLU 266 A GLU 266 1_555 E FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc8 A OE2 GLU 266 A GLU 266 1_555 F FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc9 E FE FE . A FE 501 1_555 G OAC 6XZ . A 6XZ 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc10 F FE FE . A FE 502 1_555 G OAC 6XZ . A 6XZ 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc11 B OE1 GLU 123 B GLU 123 1_555 H FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc12 B OE2 GLU 123 B GLU 123 1_555 H FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc13 B OE1 GLU 162 B GLU 162 1_555 H FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc14 B OE2 GLU 162 B GLU 162 1_555 I FE FE . B FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc15 B OE1 GLU 213 B GLU 213 1_555 I FE FE . B FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc16 B OE2 GLU 213 B GLU 213 1_555 I FE FE . B FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc17 B OE1 GLU 266 B GLU 266 1_555 H FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc18 B OE2 GLU 266 B GLU 266 1_555 I FE FE . B FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc19 H FE FE . B FE 501 1_555 J O OH . B OH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc20 I FE FE . B FE 502 1_555 J O OH . B OH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc21 C OE1 GLU 123 C GLU 123 1_555 K FE FE . C FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc22 C OE2 GLU 123 C GLU 123 1_555 K FE FE . C FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc23 C OE1 GLU 162 C GLU 162 1_555 K FE FE . C FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc24 C OE2 GLU 162 C GLU 162 1_555 L FE FE . C FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc25 C OE1 GLU 213 C GLU 213 1_555 L FE FE . C FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc26 C OE2 GLU 213 C GLU 213 1_555 L FE FE . C FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc27 C OE1 GLU 266 C GLU 266 1_555 K FE FE . C FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc28 C OE2 GLU 266 C GLU 266 1_555 L FE FE . C FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc29 K FE FE . C FE 501 1_555 M O OH . C OH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc30 L FE FE . C FE 502 1_555 M O OH . C OH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc31 D OE1 GLU 123 D GLU 123 1_555 N FE FE . D FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc32 D OE2 GLU 123 D GLU 123 1_555 N FE FE . D FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? metalc ? metalc33 D OE1 GLU 162 D GLU 162 1_555 N FE FE . D FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc34 D OE2 GLU 162 D GLU 162 1_555 O FE FE . D FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc35 D OE1 GLU 213 D GLU 213 1_555 O FE FE . D FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc36 D OE2 GLU 213 D GLU 213 1_555 O FE FE . D FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc37 D OE1 GLU 266 D GLU 266 1_555 N FE FE . D FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc38 D OE2 GLU 266 D GLU 266 1_555 O FE FE . D FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc39 N FE FE . D FE 501 1_555 P O OH . D OH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc40 O FE FE . D FE 502 1_555 P O OH . D OH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? # _chem_comp.formula 'C21 H22 N2 O5' _chem_comp.formula_weight 382.41 _chem_comp.id 6XZ _chem_comp.mon_nstd_flag . _chem_comp.name 4-[[4-(4-methoxyphenyl)piperazin-1-yl]methyl]-7,8-bis(oxidanyl)chromen-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAQ CAA 6XZ sing 1 n n OAQ CAS 6XZ sing 2 n n CAF CAS 6XZ doub 3 n y CAF CAH 6XZ sing 4 n y CAS CAE 6XZ sing 5 n y CAH CAU 6XZ doub 6 n y CAE CAG 6XZ doub 7 n y CAU CAG 6XZ sing 8 n y CAU NBB 6XZ sing 9 n n NBB CAO 6XZ sing 10 n n NBB CAN 6XZ sing 11 n n CAO CAM 6XZ sing 12 n n CAN CAL 6XZ sing 13 n n CAM NBA 6XZ sing 14 n n CAL NBA 6XZ sing 15 n n NBA CAP 6XZ sing 16 n n CAP CAV 6XZ sing 17 n n CAK CAV 6XZ doub 18 n n CAK CAX 6XZ sing 19 n n CAV CAY 6XZ sing 20 n n OAB CAX 6XZ doub 21 n n CAX OAR 6XZ sing 22 n n CAY CAJ 6XZ doub 23 n y CAY CAZ 6XZ sing 24 n y CAJ CAI 6XZ sing 25 n y OAR CAZ 6XZ sing 26 n n CAZ CAW 6XZ doub 27 n y CAI CAT 6XZ doub 28 n y CAW CAT 6XZ sing 29 n y CAW OAD 6XZ sing 30 n n CAT OAC 6XZ sing 31 n n CAA H1 6XZ sing 32 n n CAA H2 6XZ sing 33 n n CAA H3 6XZ sing 34 n n CAF H4 6XZ sing 35 n n CAH H5 6XZ sing 36 n n CAE H6 6XZ sing 37 n n CAG H7 6XZ sing 38 n n CAO H8 6XZ sing 39 n n CAO H9 6XZ sing 40 n n CAM H10 6XZ sing 41 n n CAM H11 6XZ sing 42 n n CAN H12 6XZ sing 43 n n CAN H13 6XZ sing 44 n n CAL H14 6XZ sing 45 n n CAL H15 6XZ sing 46 n n CAP H17 6XZ sing 47 n n CAP H18 6XZ sing 48 n n CAK H19 6XZ sing 49 n n CAJ H20 6XZ sing 50 n n CAI H21 6XZ sing 51 n n OAC H22 6XZ sing 52 n n OAD H23 6XZ sing 53 n n # _atom_sites.entry_id 5GN7 _atom_sites.fract_transf_matrix[1][1] 0.006609 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00304 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00449 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017426 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FE A 1 501 501 FE FE . F 2 FE A 1 502 502 FE FE . G 3 6XZ A 1 503 602 6XZ DRG . H 2 FE B 1 501 501 FE FE . I 2 FE B 1 502 502 FE FE . J 4 OH B 1 503 503 OH OH . K 2 FE C 1 501 501 FE FE . L 2 FE C 1 502 502 FE FE . M 4 OH C 1 503 503 OH OH . N 2 FE D 1 501 501 FE FE . O 2 FE D 1 502 502 FE FE . P 4 OH D 1 503 503 OH OH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 6XZ . . . G 3 -8.172 19.869 31.314 1 91.46 ? CAA 6XZ 503 A 1 HETATM 2 O OAQ 6XZ . . . G 3 -6.729 19.91 31.294 1 103.85 ? OAQ 6XZ 503 A 1 HETATM 3 C CAS 6XZ . . . G 3 -6.077 20.895 31.993 1 107.97 ? CAS 6XZ 503 A 1 HETATM 4 C CAF 6XZ . . . G 3 -4.864 21.438 31.526 1 107.97 ? CAF 6XZ 503 A 1 HETATM 5 C CAH 6XZ . . . G 3 -4.182 22.448 32.238 1 109.74 ? CAH 6XZ 503 A 1 HETATM 6 C CAE 6XZ . . . G 3 -6.586 21.362 33.2 1 112.11 ? CAE 6XZ 503 A 1 HETATM 7 C CAG 6XZ . . . G 3 -5.903 22.359 33.891 1 125.93 ? CAG 6XZ 503 A 1 HETATM 8 C CAU 6XZ . . . G 3 -4.694 22.926 33.457 1 118.95 ? CAU 6XZ 503 A 1 HETATM 9 N NBB 6XZ . . . G 3 -4.112 23.903 34.228 1 115.61 ? NBB 6XZ 503 A 1 HETATM 10 C CAO 6XZ . . . G 3 -4.127 23.844 35.743 1 120.07 ? CAO 6XZ 503 A 1 HETATM 11 C CAM 6XZ . . . G 3 -2.868 24.322 36.486 1 115.21 ? CAM 6XZ 503 A 1 HETATM 12 C CAN 6XZ . . . G 3 -3.602 25.134 33.647 1 116.12 ? CAN 6XZ 503 A 1 HETATM 13 C CAL 6XZ . . . G 3 -2.527 25.74 34.594 1 114 ? CAL 6XZ 503 A 1 HETATM 14 N NBA 6XZ . . . G 3 -1.867 24.741 35.485 1 112.38 ? NBA 6XZ 503 A 1 HETATM 15 C CAP 6XZ . . . G 3 -0.653 25.383 35.999 1 107.77 ? CAP 6XZ 503 A 1 HETATM 16 C CAV 6XZ . . . G 3 0.147 24.631 36.93 1 97.53 ? CAV 6XZ 503 A 1 HETATM 17 C CAK 6XZ . . . G 3 0.035 25.028 38.256 1 88.62 ? CAK 6XZ 503 A 1 HETATM 18 C CAX 6XZ . . . G 3 0.804 24.426 39.238 1 83.75 ? CAX 6XZ 503 A 1 HETATM 19 O OAB 6XZ . . . G 3 0.576 24.865 40.356 1 62.25 ? OAB 6XZ 503 A 1 HETATM 20 O OAR 6XZ . . . G 3 1.68 23.37 38.972 1 91.92 ? OAR 6XZ 503 A 1 HETATM 21 C CAZ 6XZ . . . G 3 1.866 22.965 37.648 1 93.41 ? CAZ 6XZ 503 A 1 HETATM 22 C CAY 6XZ . . . G 3 1.099 23.602 36.62 1 96.06 ? CAY 6XZ 503 A 1 HETATM 23 C CAJ 6XZ . . . G 3 1.344 23.159 35.297 1 96.43 ? CAJ 6XZ 503 A 1 HETATM 24 C CAI 6XZ . . . G 3 2.269 22.143 34.975 1 90.69 ? CAI 6XZ 503 A 1 HETATM 25 C CAT 6XZ . . . G 3 3.008 21.521 35.995 1 83.62 ? CAT 6XZ 503 A 1 HETATM 26 O OAC 6XZ . . . G 3 3.927 20.541 35.729 1 65.85 ? OAC 6XZ 503 A 1 HETATM 27 C CAW 6XZ . . . G 3 2.812 21.924 37.337 1 85.31 ? CAW 6XZ 503 A 1 HETATM 28 O OAD 6XZ . . . G 3 3.554 21.295 38.316 1 61.17 ? OAD 6XZ 503 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #