data_5GND # _model_server_result.job_id TFf9DCIwgrwWAYRoCYJaqA _model_server_result.datetime_utc '2024-11-05 00:23:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gnd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5GND # _exptl.entry_id 5GND _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5GND _cell.length_a 135.219 _cell.length_b 135.219 _cell.length_c 113.754 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GND _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 1 2 A,B,C,D,E,F 1 3 A,B,C,D,E,F 1 4 A,B,C,D,E,F 1 5 A,B,C,D,E,F 1 6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 113.754 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 113.754 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 113.754 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C ZN ZN . A ZN 501 1_555 E O HOH . A HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc2 C ZN ZN . A ZN 501 1_555 E O HOH . A HOH 635 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc3 C ZN ZN . A ZN 501 1_555 E O HOH . A HOH 662 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc4 C ZN ZN . A ZN 501 1_555 E O HOH . A HOH 662 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5GND _atom_sites.fract_transf_matrix[1][1] 0.007395 _atom_sites.fract_transf_matrix[1][2] 0.00427 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008791 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 501 501 ZN ZN . D 4 NA A 1 502 502 NA NA . E 5 HOH A 1 601 601 HOH HOH . E 5 HOH A 2 602 602 HOH HOH . E 5 HOH A 3 603 603 HOH HOH . E 5 HOH A 4 604 604 HOH HOH . E 5 HOH A 5 605 605 HOH HOH . E 5 HOH A 6 606 606 HOH HOH . E 5 HOH A 7 607 607 HOH HOH . E 5 HOH A 8 608 608 HOH HOH . E 5 HOH A 9 609 609 HOH HOH . E 5 HOH A 10 610 610 HOH HOH . E 5 HOH A 11 611 611 HOH HOH . E 5 HOH A 12 612 612 HOH HOH . E 5 HOH A 13 613 613 HOH HOH . E 5 HOH A 14 614 615 HOH HOH . E 5 HOH A 15 615 616 HOH HOH . E 5 HOH A 16 616 617 HOH HOH . E 5 HOH A 17 617 618 HOH HOH . E 5 HOH A 18 618 619 HOH HOH . E 5 HOH A 19 619 620 HOH HOH . E 5 HOH A 20 620 621 HOH HOH . E 5 HOH A 21 621 622 HOH HOH . E 5 HOH A 22 622 623 HOH HOH . E 5 HOH A 23 623 624 HOH HOH . E 5 HOH A 24 624 625 HOH HOH . E 5 HOH A 25 625 626 HOH HOH . E 5 HOH A 26 626 627 HOH HOH . E 5 HOH A 27 627 628 HOH HOH . E 5 HOH A 28 628 629 HOH HOH . E 5 HOH A 29 629 631 HOH HOH . E 5 HOH A 30 630 632 HOH HOH . E 5 HOH A 31 631 633 HOH HOH . E 5 HOH A 32 632 634 HOH HOH . E 5 HOH A 33 633 635 HOH HOH . E 5 HOH A 34 634 636 HOH HOH . E 5 HOH A 35 635 637 HOH HOH . E 5 HOH A 36 636 638 HOH HOH . E 5 HOH A 37 637 639 HOH HOH . E 5 HOH A 38 638 655 HOH HOH . E 5 HOH A 39 639 640 HOH HOH . E 5 HOH A 40 640 641 HOH HOH . E 5 HOH A 41 641 642 HOH HOH . E 5 HOH A 42 642 643 HOH HOH . E 5 HOH A 43 643 644 HOH HOH . E 5 HOH A 44 644 645 HOH HOH . E 5 HOH A 45 645 646 HOH HOH . E 5 HOH A 46 646 647 HOH HOH . E 5 HOH A 47 647 648 HOH HOH . E 5 HOH A 48 648 649 HOH HOH . E 5 HOH A 49 649 650 HOH HOH . E 5 HOH A 50 650 651 HOH HOH . E 5 HOH A 51 651 652 HOH HOH . E 5 HOH A 52 652 653 HOH HOH . E 5 HOH A 53 653 654 HOH HOH . E 5 HOH A 54 654 656 HOH HOH . E 5 HOH A 55 655 657 HOH HOH . E 5 HOH A 56 656 658 HOH HOH . E 5 HOH A 57 657 663 HOH HOH . E 5 HOH A 58 658 659 HOH HOH . E 5 HOH A 59 659 660 HOH HOH . E 5 HOH A 60 660 661 HOH HOH . E 5 HOH A 61 661 662 HOH HOH . E 5 HOH A 62 662 664 HOH HOH . E 5 HOH A 63 663 665 HOH HOH . F 5 HOH U 1 101 101 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -0.01 _atom_site.Cartn_y -0.014 _atom_site.Cartn_z 26.133 _atom_site.occupancy 0.16 _atom_site.B_iso_or_equiv 33.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #