data_5GND
#
_model_server_result.job_id            SkguetgWjYwGIf7ep2vOvw 
_model_server_result.datetime_utc      '2024-11-05 00:21:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gnd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    5GND 
#
_exptl.entry_id    5GND 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5GND 
_cell.length_a            135.219 
_cell.length_b            135.219 
_cell.length_c            113.754 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GND 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 1 2 
A,B,C,D,E,F 1 3 
A,B,C,D,E,F 1 4 
A,B,C,D,E,F 1 5 
A,B,C,D,E,F 1 6 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 113.754 
5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 113.754 
6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 113.754 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C ZN ZN . A ZN 501 1_555 E O HOH . A HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc2 C ZN ZN . A ZN 501 1_555 E O HOH . A HOH 635 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? 
metalc ? metalc3 C ZN ZN . A ZN 501 1_555 E O HOH . A HOH 662 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? 
metalc ? metalc4 C ZN ZN . A ZN 501 1_555 E O HOH . A HOH 662 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5GND 
_atom_sites.fract_transf_matrix[1][1]    0.007395 
_atom_sites.fract_transf_matrix[1][2]    0.00427 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008539 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008791 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 501 501 ZN ZN . 
D 4 NA A 1 502 502 NA NA . 
E 5 HOH A 1 601 601 HOH HOH . 
E 5 HOH A 2 602 602 HOH HOH . 
E 5 HOH A 3 603 603 HOH HOH . 
E 5 HOH A 4 604 604 HOH HOH . 
E 5 HOH A 5 605 605 HOH HOH . 
E 5 HOH A 6 606 606 HOH HOH . 
E 5 HOH A 7 607 607 HOH HOH . 
E 5 HOH A 8 608 608 HOH HOH . 
E 5 HOH A 9 609 609 HOH HOH . 
E 5 HOH A 10 610 610 HOH HOH . 
E 5 HOH A 11 611 611 HOH HOH . 
E 5 HOH A 12 612 612 HOH HOH . 
E 5 HOH A 13 613 613 HOH HOH . 
E 5 HOH A 14 614 615 HOH HOH . 
E 5 HOH A 15 615 616 HOH HOH . 
E 5 HOH A 16 616 617 HOH HOH . 
E 5 HOH A 17 617 618 HOH HOH . 
E 5 HOH A 18 618 619 HOH HOH . 
E 5 HOH A 19 619 620 HOH HOH . 
E 5 HOH A 20 620 621 HOH HOH . 
E 5 HOH A 21 621 622 HOH HOH . 
E 5 HOH A 22 622 623 HOH HOH . 
E 5 HOH A 23 623 624 HOH HOH . 
E 5 HOH A 24 624 625 HOH HOH . 
E 5 HOH A 25 625 626 HOH HOH . 
E 5 HOH A 26 626 627 HOH HOH . 
E 5 HOH A 27 627 628 HOH HOH . 
E 5 HOH A 28 628 629 HOH HOH . 
E 5 HOH A 29 629 631 HOH HOH . 
E 5 HOH A 30 630 632 HOH HOH . 
E 5 HOH A 31 631 633 HOH HOH . 
E 5 HOH A 32 632 634 HOH HOH . 
E 5 HOH A 33 633 635 HOH HOH . 
E 5 HOH A 34 634 636 HOH HOH . 
E 5 HOH A 35 635 637 HOH HOH . 
E 5 HOH A 36 636 638 HOH HOH . 
E 5 HOH A 37 637 639 HOH HOH . 
E 5 HOH A 38 638 655 HOH HOH . 
E 5 HOH A 39 639 640 HOH HOH . 
E 5 HOH A 40 640 641 HOH HOH . 
E 5 HOH A 41 641 642 HOH HOH . 
E 5 HOH A 42 642 643 HOH HOH . 
E 5 HOH A 43 643 644 HOH HOH . 
E 5 HOH A 44 644 645 HOH HOH . 
E 5 HOH A 45 645 646 HOH HOH . 
E 5 HOH A 46 646 647 HOH HOH . 
E 5 HOH A 47 647 648 HOH HOH . 
E 5 HOH A 48 648 649 HOH HOH . 
E 5 HOH A 49 649 650 HOH HOH . 
E 5 HOH A 50 650 651 HOH HOH . 
E 5 HOH A 51 651 652 HOH HOH . 
E 5 HOH A 52 652 653 HOH HOH . 
E 5 HOH A 53 653 654 HOH HOH . 
E 5 HOH A 54 654 656 HOH HOH . 
E 5 HOH A 55 655 657 HOH HOH . 
E 5 HOH A 56 656 658 HOH HOH . 
E 5 HOH A 57 657 663 HOH HOH . 
E 5 HOH A 58 658 659 HOH HOH . 
E 5 HOH A 59 659 660 HOH HOH . 
E 5 HOH A 60 660 661 HOH HOH . 
E 5 HOH A 61 661 662 HOH HOH . 
E 5 HOH A 62 662 664 HOH HOH . 
E 5 HOH A 63 663 665 HOH HOH . 
F 5 HOH U 1 101 101 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               0 
_atom_site.Cartn_y               0.001 
_atom_site.Cartn_z               20.83 
_atom_site.occupancy             0.33 
_atom_site.B_iso_or_equiv        21.76 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#