data_5GNL
#
_model_server_result.job_id            WyPrpSW9x71cx3GW3qQLpQ 
_model_server_result.datetime_utc      '2024-11-18 06:26:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gnl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    5GNL 
#
_exptl.entry_id    5GNL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              120.147 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-(2-METHOXYETHOXY)ETHANOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5GNL 
_cell.length_a            61.67 
_cell.length_b            61.67 
_cell.length_c            98.166 
_cell.Z_PDB               3 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GNL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 347 A CYS 347 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc2 B FE HEM . A HEM 501 1_555 D O HOH . A HOH 665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
#
_chem_comp.formula           'C5 H12 O3' 
_chem_comp.formula_weight    120.147 
_chem_comp.id                PG0 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-(2-METHOXYETHOXY)ETHANOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'PEG 6000' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 O2 PG0 sing 319 n n 
C5 H51 PG0 sing 320 n n 
C5 H52 PG0 sing 321 n n 
C5 H53 PG0 sing 322 n n 
O2 C4 PG0 sing 323 n n 
C4 C3 PG0 sing 324 n n 
C4 H41 PG0 sing 325 n n 
C4 H42 PG0 sing 326 n n 
C3 O1 PG0 sing 327 n n 
C3 H31 PG0 sing 328 n n 
C3 H32 PG0 sing 329 n n 
O1 C2 PG0 sing 330 n n 
C2 C1 PG0 sing 331 n n 
C2 H21 PG0 sing 332 n n 
C2 H22 PG0 sing 333 n n 
C1 OTT PG0 sing 334 n n 
C1 H11 PG0 sing 335 n n 
C1 H12 PG0 sing 336 n n 
OTT HTT PG0 sing 337 n n 
#
_atom_sites.entry_id                     5GNL 
_atom_sites.fract_transf_matrix[1][1]    0.016215 
_atom_sites.fract_transf_matrix[1][2]    0.009362 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018724 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010187 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 501 412 HEM HEM . 
C 3 PG0 A 1 502 420 PG0 PG0 . 
D 4 HOH A 1 601 43 HOH HOH . 
D 4 HOH A 2 602 76 HOH HOH . 
D 4 HOH A 3 603 96 HOH HOH . 
D 4 HOH A 4 604 78 HOH HOH . 
D 4 HOH A 5 605 117 HOH HOH . 
D 4 HOH A 6 606 83 HOH HOH . 
D 4 HOH A 7 607 8 HOH HOH . 
D 4 HOH A 8 608 9 HOH HOH . 
D 4 HOH A 9 609 12 HOH HOH . 
D 4 HOH A 10 610 66 HOH HOH . 
D 4 HOH A 11 611 19 HOH HOH . 
D 4 HOH A 12 612 20 HOH HOH . 
D 4 HOH A 13 613 48 HOH HOH . 
D 4 HOH A 14 614 7 HOH HOH . 
D 4 HOH A 15 615 91 HOH HOH . 
D 4 HOH A 16 616 75 HOH HOH . 
D 4 HOH A 17 617 69 HOH HOH . 
D 4 HOH A 18 618 72 HOH HOH . 
D 4 HOH A 19 619 29 HOH HOH . 
D 4 HOH A 20 620 22 HOH HOH . 
D 4 HOH A 21 621 28 HOH HOH . 
D 4 HOH A 22 622 85 HOH HOH . 
D 4 HOH A 23 623 88 HOH HOH . 
D 4 HOH A 24 624 55 HOH HOH . 
D 4 HOH A 25 625 70 HOH HOH . 
D 4 HOH A 26 626 36 HOH HOH . 
D 4 HOH A 27 627 79 HOH HOH . 
D 4 HOH A 28 628 31 HOH HOH . 
D 4 HOH A 29 629 49 HOH HOH . 
D 4 HOH A 30 630 33 HOH HOH . 
D 4 HOH A 31 631 2 HOH HOH . 
D 4 HOH A 32 632 27 HOH HOH . 
D 4 HOH A 33 633 56 HOH HOH . 
D 4 HOH A 34 634 64 HOH HOH . 
D 4 HOH A 35 635 5 HOH HOH . 
D 4 HOH A 36 636 65 HOH HOH . 
D 4 HOH A 37 637 26 HOH HOH . 
D 4 HOH A 38 638 35 HOH HOH . 
D 4 HOH A 39 639 4 HOH HOH . 
D 4 HOH A 40 640 57 HOH HOH . 
D 4 HOH A 41 641 73 HOH HOH . 
D 4 HOH A 42 642 32 HOH HOH . 
D 4 HOH A 43 643 1 HOH HOH . 
D 4 HOH A 44 644 84 HOH HOH . 
D 4 HOH A 45 645 108 HOH HOH . 
D 4 HOH A 46 646 3 HOH HOH . 
D 4 HOH A 47 647 54 HOH HOH . 
D 4 HOH A 48 648 115 HOH HOH . 
D 4 HOH A 49 649 30 HOH HOH . 
D 4 HOH A 50 650 45 HOH HOH . 
D 4 HOH A 51 651 11 HOH HOH . 
D 4 HOH A 52 652 38 HOH HOH . 
D 4 HOH A 53 653 40 HOH HOH . 
D 4 HOH A 54 654 95 HOH HOH . 
D 4 HOH A 55 655 104 HOH HOH . 
D 4 HOH A 56 656 110 HOH HOH . 
D 4 HOH A 57 657 15 HOH HOH . 
D 4 HOH A 58 658 60 HOH HOH . 
D 4 HOH A 59 659 34 HOH HOH . 
D 4 HOH A 60 660 21 HOH HOH . 
D 4 HOH A 61 661 39 HOH HOH . 
D 4 HOH A 62 662 92 HOH HOH . 
D 4 HOH A 63 663 98 HOH HOH . 
D 4 HOH A 64 664 24 HOH HOH . 
D 4 HOH A 65 665 13 HOH HOH . 
D 4 HOH A 66 666 114 HOH HOH . 
D 4 HOH A 67 667 47 HOH HOH . 
D 4 HOH A 68 668 102 HOH HOH . 
D 4 HOH A 69 669 52 HOH HOH . 
D 4 HOH A 70 670 17 HOH HOH . 
D 4 HOH A 71 671 44 HOH HOH . 
D 4 HOH A 72 672 74 HOH HOH . 
D 4 HOH A 73 673 41 HOH HOH . 
D 4 HOH A 74 674 46 HOH HOH . 
D 4 HOH A 75 675 105 HOH HOH . 
D 4 HOH A 76 676 42 HOH HOH . 
D 4 HOH A 77 677 100 HOH HOH . 
D 4 HOH A 78 678 81 HOH HOH . 
D 4 HOH A 79 679 77 HOH HOH . 
D 4 HOH A 80 680 93 HOH HOH . 
D 4 HOH A 81 681 16 HOH HOH . 
D 4 HOH A 82 682 58 HOH HOH . 
D 4 HOH A 83 683 10 HOH HOH . 
D 4 HOH A 84 684 99 HOH HOH . 
D 4 HOH A 85 685 71 HOH HOH . 
D 4 HOH A 86 686 111 HOH HOH . 
D 4 HOH A 87 687 107 HOH HOH . 
D 4 HOH A 88 688 37 HOH HOH . 
D 4 HOH A 89 689 67 HOH HOH . 
D 4 HOH A 90 690 62 HOH HOH . 
D 4 HOH A 91 691 109 HOH HOH . 
D 4 HOH A 92 692 112 HOH HOH . 
D 4 HOH A 93 693 23 HOH HOH . 
D 4 HOH A 94 694 14 HOH HOH . 
D 4 HOH A 95 695 50 HOH HOH . 
D 4 HOH A 96 696 6 HOH HOH . 
D 4 HOH A 97 697 61 HOH HOH . 
D 4 HOH A 98 698 103 HOH HOH . 
D 4 HOH A 99 699 53 HOH HOH . 
D 4 HOH A 100 700 25 HOH HOH . 
D 4 HOH A 101 701 51 HOH HOH . 
D 4 HOH A 102 702 89 HOH HOH . 
D 4 HOH A 103 703 18 HOH HOH . 
D 4 HOH A 104 704 101 HOH HOH . 
D 4 HOH A 105 705 80 HOH HOH . 
D 4 HOH A 106 706 106 HOH HOH . 
D 4 HOH A 107 707 86 HOH HOH . 
D 4 HOH A 108 708 68 HOH HOH . 
D 4 HOH A 109 709 94 HOH HOH . 
D 4 HOH A 110 710 59 HOH HOH . 
D 4 HOH A 111 711 87 HOH HOH . 
D 4 HOH A 112 712 82 HOH HOH . 
D 4 HOH A 113 713 63 HOH HOH . 
D 4 HOH A 114 714 97 HOH HOH . 
D 4 HOH A 115 715 116 HOH HOH . 
D 4 HOH A 116 716 90 HOH HOH . 
D 4 HOH A 117 717 113 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C5 PG0 . . . C 3 9.308 8.694 -3.519 1 44.66 ? C5 PG0 502 A 1 
HETATM 2 O O2 PG0 . . . C 3 8.261 9.554 -3.059 1 49.01 ? O2 PG0 502 A 1 
HETATM 3 C C4 PG0 . . . C 3 7.677 9.055 -1.857 1 46.34 ? C4 PG0 502 A 1 
HETATM 4 C C3 PG0 . . . C 3 6.534 9.93 -1.367 1 47.05 ? C3 PG0 502 A 1 
HETATM 5 O O1 PG0 . . . C 3 5.294 9.281 -1.622 1 52.12 ? O1 PG0 502 A 1 
HETATM 6 C C2 PG0 . . . C 3 4.61 8.836 -0.447 1 48.18 ? C2 PG0 502 A 1 
HETATM 7 C C1 PG0 . . . C 3 3.764 7.609 -0.772 1 47.84 ? C1 PG0 502 A 1 
HETATM 8 O OTT PG0 . . . C 3 2.377 7.776 -0.426 1 44.89 ? OTT PG0 502 A 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           8 
#