data_5GOY # _model_server_result.job_id TLbN8VH6P1H3LSXcmvY6mw _model_server_result.datetime_utc '2024-11-21 16:58:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5goy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":903}' # _entry.id 5GOY # _exptl.entry_id 5GOY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 149.211 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5GOY _cell.length_a 65.539 _cell.length_b 93.133 _cell.length_c 122.482 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GOY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 171 A CYS 389 1_555 B ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc2 A SG CYS 174 A CYS 392 1_555 B ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc3 A SG CYS 187 A CYS 405 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc4 A SG CYS 190 A CYS 408 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc5 A SG CYS 200 A CYS 418 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc6 A SG CYS 203 A CYS 421 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc7 A SG CYS 217 A CYS 435 1_555 B ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc8 A SG CYS 220 A CYS 438 1_555 B ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? # _chem_comp.formula 'C5 H11 N O2 S' _chem_comp.formula_weight 149.211 _chem_comp.id MET _chem_comp.mon_nstd_flag y _chem_comp.name METHIONINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA MET sing 218 n n N H MET sing 219 n n N H2 MET sing 220 n n CA C MET sing 221 n n CA CB MET sing 222 n n CA HA MET sing 223 n n C O MET doub 224 n n C OXT MET sing 225 n n CB CG MET sing 226 n n CB HB2 MET sing 227 n n CB HB3 MET sing 228 n n CG SD MET sing 229 n n CG HG2 MET sing 230 n n CG HG3 MET sing 231 n n SD CE MET sing 232 n n CE HE1 MET sing 233 n n CE HE2 MET sing 234 n n CE HE3 MET sing 235 n n OXT HXT MET sing 236 n n # _atom_sites.entry_id 5GOY _atom_sites.fract_transf_matrix[1][1] 0.015258 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010737 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008164 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 901 1 ZN ZN . C 2 ZN A 1 902 2 ZN ZN . D 3 MET A 1 903 1 MET MET . E 4 HOH A 1 1001 10 HOH HOH . E 4 HOH A 2 1002 179 HOH HOH . E 4 HOH A 3 1003 218 HOH HOH . E 4 HOH A 4 1004 82 HOH HOH . E 4 HOH A 5 1005 52 HOH HOH . E 4 HOH A 6 1006 109 HOH HOH . E 4 HOH A 7 1007 154 HOH HOH . E 4 HOH A 8 1008 93 HOH HOH . E 4 HOH A 9 1009 122 HOH HOH . E 4 HOH A 10 1010 96 HOH HOH . E 4 HOH A 11 1011 162 HOH HOH . E 4 HOH A 12 1012 181 HOH HOH . E 4 HOH A 13 1013 206 HOH HOH . E 4 HOH A 14 1014 37 HOH HOH . E 4 HOH A 15 1015 104 HOH HOH . E 4 HOH A 16 1016 28 HOH HOH . E 4 HOH A 17 1017 25 HOH HOH . E 4 HOH A 18 1018 79 HOH HOH . E 4 HOH A 19 1019 172 HOH HOH . E 4 HOH A 20 1020 22 HOH HOH . E 4 HOH A 21 1021 7 HOH HOH . E 4 HOH A 22 1022 95 HOH HOH . E 4 HOH A 23 1023 83 HOH HOH . E 4 HOH A 24 1024 55 HOH HOH . E 4 HOH A 25 1025 62 HOH HOH . E 4 HOH A 26 1026 45 HOH HOH . E 4 HOH A 27 1027 2 HOH HOH . E 4 HOH A 28 1028 12 HOH HOH . E 4 HOH A 29 1029 194 HOH HOH . E 4 HOH A 30 1030 212 HOH HOH . E 4 HOH A 31 1031 124 HOH HOH . E 4 HOH A 32 1032 114 HOH HOH . E 4 HOH A 33 1033 185 HOH HOH . E 4 HOH A 34 1034 159 HOH HOH . E 4 HOH A 35 1035 175 HOH HOH . E 4 HOH A 36 1036 146 HOH HOH . E 4 HOH A 37 1037 90 HOH HOH . E 4 HOH A 38 1038 106 HOH HOH . E 4 HOH A 39 1039 72 HOH HOH . E 4 HOH A 40 1040 219 HOH HOH . E 4 HOH A 41 1041 191 HOH HOH . E 4 HOH A 42 1042 173 HOH HOH . E 4 HOH A 43 1043 54 HOH HOH . E 4 HOH A 44 1044 201 HOH HOH . E 4 HOH A 45 1045 80 HOH HOH . E 4 HOH A 46 1046 4 HOH HOH . E 4 HOH A 47 1047 131 HOH HOH . E 4 HOH A 48 1048 89 HOH HOH . E 4 HOH A 49 1049 20 HOH HOH . E 4 HOH A 50 1050 128 HOH HOH . E 4 HOH A 51 1051 133 HOH HOH . E 4 HOH A 52 1052 69 HOH HOH . E 4 HOH A 53 1053 1 HOH HOH . E 4 HOH A 54 1054 98 HOH HOH . E 4 HOH A 55 1055 43 HOH HOH . E 4 HOH A 56 1056 200 HOH HOH . E 4 HOH A 57 1057 14 HOH HOH . E 4 HOH A 58 1058 36 HOH HOH . E 4 HOH A 59 1059 29 HOH HOH . E 4 HOH A 60 1060 34 HOH HOH . E 4 HOH A 61 1061 27 HOH HOH . E 4 HOH A 62 1062 152 HOH HOH . E 4 HOH A 63 1063 92 HOH HOH . E 4 HOH A 64 1064 147 HOH HOH . E 4 HOH A 65 1065 40 HOH HOH . E 4 HOH A 66 1066 78 HOH HOH . E 4 HOH A 67 1067 199 HOH HOH . E 4 HOH A 68 1068 129 HOH HOH . E 4 HOH A 69 1069 224 HOH HOH . E 4 HOH A 70 1070 75 HOH HOH . E 4 HOH A 71 1071 108 HOH HOH . E 4 HOH A 72 1072 9 HOH HOH . E 4 HOH A 73 1073 50 HOH HOH . E 4 HOH A 74 1074 8 HOH HOH . E 4 HOH A 75 1075 214 HOH HOH . E 4 HOH A 76 1076 169 HOH HOH . E 4 HOH A 77 1077 153 HOH HOH . E 4 HOH A 78 1078 16 HOH HOH . E 4 HOH A 79 1079 11 HOH HOH . E 4 HOH A 80 1080 229 HOH HOH . E 4 HOH A 81 1081 84 HOH HOH . E 4 HOH A 82 1082 30 HOH HOH . E 4 HOH A 83 1083 121 HOH HOH . E 4 HOH A 84 1084 125 HOH HOH . E 4 HOH A 85 1085 157 HOH HOH . E 4 HOH A 86 1086 198 HOH HOH . E 4 HOH A 87 1087 127 HOH HOH . E 4 HOH A 88 1088 209 HOH HOH . E 4 HOH A 89 1089 19 HOH HOH . E 4 HOH A 90 1090 5 HOH HOH . E 4 HOH A 91 1091 67 HOH HOH . E 4 HOH A 92 1092 33 HOH HOH . E 4 HOH A 93 1093 59 HOH HOH . E 4 HOH A 94 1094 148 HOH HOH . E 4 HOH A 95 1095 111 HOH HOH . E 4 HOH A 96 1096 151 HOH HOH . E 4 HOH A 97 1097 170 HOH HOH . E 4 HOH A 98 1098 13 HOH HOH . E 4 HOH A 99 1099 18 HOH HOH . E 4 HOH A 100 1100 31 HOH HOH . E 4 HOH A 101 1101 66 HOH HOH . E 4 HOH A 102 1102 65 HOH HOH . E 4 HOH A 103 1103 85 HOH HOH . E 4 HOH A 104 1104 158 HOH HOH . E 4 HOH A 105 1105 134 HOH HOH . E 4 HOH A 106 1106 56 HOH HOH . E 4 HOH A 107 1107 135 HOH HOH . E 4 HOH A 108 1108 107 HOH HOH . E 4 HOH A 109 1109 178 HOH HOH . E 4 HOH A 110 1110 220 HOH HOH . E 4 HOH A 111 1111 87 HOH HOH . E 4 HOH A 112 1112 221 HOH HOH . E 4 HOH A 113 1113 210 HOH HOH . E 4 HOH A 114 1114 38 HOH HOH . E 4 HOH A 115 1115 53 HOH HOH . E 4 HOH A 116 1116 204 HOH HOH . E 4 HOH A 117 1117 86 HOH HOH . E 4 HOH A 118 1118 160 HOH HOH . E 4 HOH A 119 1119 168 HOH HOH . E 4 HOH A 120 1120 203 HOH HOH . E 4 HOH A 121 1121 207 HOH HOH . E 4 HOH A 122 1122 15 HOH HOH . E 4 HOH A 123 1123 39 HOH HOH . E 4 HOH A 124 1124 230 HOH HOH . E 4 HOH A 125 1125 192 HOH HOH . E 4 HOH A 126 1126 101 HOH HOH . E 4 HOH A 127 1127 105 HOH HOH . E 4 HOH A 128 1128 58 HOH HOH . E 4 HOH A 129 1129 130 HOH HOH . E 4 HOH A 130 1130 49 HOH HOH . E 4 HOH A 131 1131 202 HOH HOH . E 4 HOH A 132 1132 188 HOH HOH . E 4 HOH A 133 1133 57 HOH HOH . E 4 HOH A 134 1134 21 HOH HOH . E 4 HOH A 135 1135 46 HOH HOH . E 4 HOH A 136 1136 205 HOH HOH . E 4 HOH A 137 1137 197 HOH HOH . E 4 HOH A 138 1138 103 HOH HOH . E 4 HOH A 139 1139 132 HOH HOH . E 4 HOH A 140 1140 64 HOH HOH . E 4 HOH A 141 1141 97 HOH HOH . E 4 HOH A 142 1142 176 HOH HOH . E 4 HOH A 143 1143 94 HOH HOH . E 4 HOH A 144 1144 184 HOH HOH . E 4 HOH A 145 1145 91 HOH HOH . E 4 HOH A 146 1146 123 HOH HOH . E 4 HOH A 147 1147 88 HOH HOH . E 4 HOH A 148 1148 115 HOH HOH . E 4 HOH A 149 1149 156 HOH HOH . E 4 HOH A 150 1150 145 HOH HOH . E 4 HOH A 151 1151 141 HOH HOH . E 4 HOH A 152 1152 100 HOH HOH . E 4 HOH A 153 1153 44 HOH HOH . E 4 HOH A 154 1154 51 HOH HOH . E 4 HOH A 155 1155 222 HOH HOH . E 4 HOH A 156 1156 155 HOH HOH . E 4 HOH A 157 1157 149 HOH HOH . E 4 HOH A 158 1158 216 HOH HOH . E 4 HOH A 159 1159 166 HOH HOH . E 4 HOH A 160 1160 165 HOH HOH . E 4 HOH A 161 1161 137 HOH HOH . E 4 HOH A 162 1162 26 HOH HOH . E 4 HOH A 163 1163 140 HOH HOH . E 4 HOH A 164 1164 226 HOH HOH . E 4 HOH A 165 1165 195 HOH HOH . E 4 HOH A 166 1166 32 HOH HOH . E 4 HOH A 167 1167 41 HOH HOH . E 4 HOH A 168 1168 3 HOH HOH . E 4 HOH A 169 1169 17 HOH HOH . E 4 HOH A 170 1170 227 HOH HOH . E 4 HOH A 171 1171 164 HOH HOH . E 4 HOH A 172 1172 113 HOH HOH . E 4 HOH A 173 1173 71 HOH HOH . E 4 HOH A 174 1174 150 HOH HOH . E 4 HOH A 175 1175 225 HOH HOH . E 4 HOH A 176 1176 116 HOH HOH . E 4 HOH A 177 1177 183 HOH HOH . E 4 HOH A 178 1178 63 HOH HOH . E 4 HOH A 179 1179 117 HOH HOH . E 4 HOH A 180 1180 217 HOH HOH . E 4 HOH A 181 1181 142 HOH HOH . E 4 HOH A 182 1182 223 HOH HOH . E 4 HOH A 183 1183 171 HOH HOH . E 4 HOH A 184 1184 215 HOH HOH . E 4 HOH A 185 1185 190 HOH HOH . E 4 HOH A 186 1186 126 HOH HOH . E 4 HOH A 187 1187 24 HOH HOH . E 4 HOH A 188 1188 167 HOH HOH . E 4 HOH A 189 1189 177 HOH HOH . E 4 HOH A 190 1190 48 HOH HOH . E 4 HOH A 191 1191 47 HOH HOH . E 4 HOH A 192 1192 211 HOH HOH . E 4 HOH A 193 1193 208 HOH HOH . E 4 HOH A 194 1194 23 HOH HOH . E 4 HOH A 195 1195 144 HOH HOH . E 4 HOH A 196 1196 81 HOH HOH . E 4 HOH A 197 1197 180 HOH HOH . E 4 HOH A 198 1198 189 HOH HOH . E 4 HOH A 199 1199 74 HOH HOH . E 4 HOH A 200 1200 182 HOH HOH . E 4 HOH A 201 1201 139 HOH HOH . E 4 HOH A 202 1202 187 HOH HOH . E 4 HOH A 203 1203 68 HOH HOH . E 4 HOH A 204 1204 99 HOH HOH . E 4 HOH A 205 1205 110 HOH HOH . E 4 HOH A 206 1206 163 HOH HOH . E 4 HOH A 207 1207 6 HOH HOH . E 4 HOH A 208 1208 77 HOH HOH . E 4 HOH A 209 1209 61 HOH HOH . E 4 HOH A 210 1210 35 HOH HOH . E 4 HOH A 211 1211 70 HOH HOH . E 4 HOH A 212 1212 186 HOH HOH . E 4 HOH A 213 1213 118 HOH HOH . E 4 HOH A 214 1214 213 HOH HOH . E 4 HOH A 215 1215 228 HOH HOH . E 4 HOH A 216 1216 193 HOH HOH . E 4 HOH A 217 1217 76 HOH HOH . E 4 HOH A 218 1218 120 HOH HOH . E 4 HOH A 219 1219 232 HOH HOH . E 4 HOH A 220 1220 119 HOH HOH . E 4 HOH A 221 1221 42 HOH HOH . E 4 HOH A 222 1222 161 HOH HOH . E 4 HOH A 223 1223 143 HOH HOH . E 4 HOH A 224 1224 231 HOH HOH . E 4 HOH A 225 1225 196 HOH HOH . E 4 HOH A 226 1226 102 HOH HOH . E 4 HOH A 227 1227 136 HOH HOH . E 4 HOH A 228 1228 60 HOH HOH . E 4 HOH A 229 1229 73 HOH HOH . E 4 HOH A 230 1230 112 HOH HOH . E 4 HOH A 231 1231 138 HOH HOH . E 4 HOH A 232 1232 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N MET . . . D 3 -14.745 -29.337 19.032 1 43.7 ? N MET 903 A 1 HETATM 2 C CA MET . . . D 3 -15.991 -29.158 18.295 1 49.52 ? CA MET 903 A 1 HETATM 3 C C MET . . . D 3 -15.722 -28.882 16.82 1 49.97 ? C MET 903 A 1 HETATM 4 O O MET . . . D 3 -16.61 -29.014 15.979 1 53.04 ? O MET 903 A 1 HETATM 5 C CB MET . . . D 3 -16.814 -28.017 18.897 1 44.09 ? CB MET 903 A 1 HETATM 6 C CG MET . . . D 3 -17.105 -28.155 20.385 1 43.11 ? CG MET 903 A 1 HETATM 7 S SD MET . . . D 3 -17.974 -26.712 21.043 1 47.4 ? SD MET 903 A 1 HETATM 8 C CE MET . . . D 3 -18.428 -27.297 22.675 1 40.14 ? CE MET 903 A 1 HETATM 9 O OXT MET . . . D 3 -14.61 -28.521 16.435 1 53.73 ? OXT MET 903 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #