data_5GOZ # _model_server_result.job_id 6Aggc4nL_Lcx3TieDknQLA _model_server_result.datetime_utc '2024-11-24 11:47:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5goz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 5GOZ # _exptl.entry_id 5GOZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5GOZ _cell.length_a 123.79 _cell.length_b 123.79 _cell.length_c 120.14 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GOZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,T 1 1 B,H,I,J,K,L,M,U 2 1 C,N,O,P,Q,R,S,V 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 H N N ? 2 N N N ? 2 O N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 30 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 29 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id L _struct_conn.ptnr2_label_atom_id O4 _struct_conn.ptnr2_label_comp_id PO4 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id PO4 _struct_conn.ptnr2_auth_seq_id 305 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.297 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5GOZ _atom_sites.fract_transf_matrix[1][1] 0.008078 _atom_sites.fract_transf_matrix[1][2] 0.004664 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009328 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GTP A 1 301 266 GTP GTP . E 3 SAH A 1 302 267 SAH SAH . F 4 PO4 A 1 303 268 PO4 PO4 . G 4 PO4 A 1 304 269 PO4 PO4 . H 2 GTP B 1 301 265 GTP GTP . I 3 SAH B 1 302 266 SAH SAH . J 5 SIN B 1 303 267 SIN SIN . K 5 SIN B 1 304 268 SIN SIN . L 4 PO4 B 1 305 269 PO4 PO4 . M 4 PO4 B 1 306 270 PO4 PO4 . N 2 GTP C 1 301 265 GTP GTP . O 2 GTP C 1 302 268 GTP GTP . P 3 SAH C 1 303 266 SAH SAH . Q 5 SIN C 1 304 267 SIN SIN . R 6 POP C 1 305 268 POP POP . S 4 PO4 C 1 306 269 PO4 PO4 . T 7 HOH A 1 401 328 HOH HOH . T 7 HOH A 2 402 329 HOH HOH . T 7 HOH A 3 403 270 HOH HOH . T 7 HOH A 4 404 293 HOH HOH . T 7 HOH A 5 405 306 HOH HOH . T 7 HOH A 6 406 298 HOH HOH . T 7 HOH A 7 407 318 HOH HOH . T 7 HOH A 8 408 332 HOH HOH . T 7 HOH A 9 409 316 HOH HOH . T 7 HOH A 10 410 305 HOH HOH . T 7 HOH A 11 411 289 HOH HOH . T 7 HOH A 12 412 325 HOH HOH . T 7 HOH A 13 413 283 HOH HOH . T 7 HOH A 14 414 271 HOH HOH . T 7 HOH A 15 415 312 HOH HOH . T 7 HOH A 16 416 310 HOH HOH . T 7 HOH A 17 417 284 HOH HOH . T 7 HOH A 18 418 302 HOH HOH . T 7 HOH A 19 419 297 HOH HOH . T 7 HOH A 20 420 287 HOH HOH . T 7 HOH A 21 421 311 HOH HOH . T 7 HOH A 22 422 288 HOH HOH . T 7 HOH A 23 423 281 HOH HOH . T 7 HOH A 24 424 327 HOH HOH . T 7 HOH A 25 425 331 HOH HOH . T 7 HOH A 26 426 294 HOH HOH . T 7 HOH A 27 427 286 HOH HOH . T 7 HOH A 28 428 309 HOH HOH . T 7 HOH A 29 429 275 HOH HOH . T 7 HOH A 30 430 319 HOH HOH . T 7 HOH A 31 431 292 HOH HOH . T 7 HOH A 32 432 333 HOH HOH . T 7 HOH A 33 433 326 HOH HOH . T 7 HOH A 34 434 301 HOH HOH . T 7 HOH A 35 435 304 HOH HOH . T 7 HOH A 36 436 274 HOH HOH . T 7 HOH A 37 437 276 HOH HOH . T 7 HOH A 38 438 272 HOH HOH . T 7 HOH A 39 439 321 HOH HOH . T 7 HOH A 40 440 307 HOH HOH . T 7 HOH A 41 441 296 HOH HOH . T 7 HOH A 42 442 295 HOH HOH . T 7 HOH A 43 443 290 HOH HOH . T 7 HOH A 44 444 320 HOH HOH . T 7 HOH A 45 445 297 HOH HOH . T 7 HOH A 46 446 324 HOH HOH . T 7 HOH A 47 447 277 HOH HOH . T 7 HOH A 48 448 278 HOH HOH . T 7 HOH A 49 449 330 HOH HOH . T 7 HOH A 50 450 283 HOH HOH . T 7 HOH A 51 451 334 HOH HOH . T 7 HOH A 52 452 291 HOH HOH . T 7 HOH A 53 453 305 HOH HOH . T 7 HOH A 54 454 317 HOH HOH . T 7 HOH A 55 455 303 HOH HOH . T 7 HOH A 56 456 280 HOH HOH . T 7 HOH A 57 457 273 HOH HOH . T 7 HOH A 58 458 314 HOH HOH . T 7 HOH A 59 459 282 HOH HOH . T 7 HOH A 60 460 300 HOH HOH . T 7 HOH A 61 461 285 HOH HOH . T 7 HOH A 62 462 315 HOH HOH . T 7 HOH A 63 463 308 HOH HOH . T 7 HOH A 64 464 323 HOH HOH . T 7 HOH A 65 465 322 HOH HOH . T 7 HOH A 66 466 309 HOH HOH . T 7 HOH A 67 467 275 HOH HOH . T 7 HOH A 68 468 313 HOH HOH . T 7 HOH A 69 469 311 HOH HOH . T 7 HOH A 70 470 299 HOH HOH . U 7 HOH B 1 401 321 HOH HOH . U 7 HOH B 2 402 274 HOH HOH . U 7 HOH B 3 403 304 HOH HOH . U 7 HOH B 4 404 297 HOH HOH . U 7 HOH B 5 405 319 HOH HOH . U 7 HOH B 6 406 296 HOH HOH . U 7 HOH B 7 407 293 HOH HOH . U 7 HOH B 8 408 291 HOH HOH . U 7 HOH B 9 409 306 HOH HOH . U 7 HOH B 10 410 294 HOH HOH . U 7 HOH B 11 411 324 HOH HOH . U 7 HOH B 12 412 303 HOH HOH . U 7 HOH B 13 413 273 HOH HOH . U 7 HOH B 14 414 278 HOH HOH . U 7 HOH B 15 415 287 HOH HOH . U 7 HOH B 16 416 312 HOH HOH . U 7 HOH B 17 417 290 HOH HOH . U 7 HOH B 18 418 316 HOH HOH . U 7 HOH B 19 419 282 HOH HOH . U 7 HOH B 20 420 317 HOH HOH . U 7 HOH B 21 421 310 HOH HOH . U 7 HOH B 22 422 314 HOH HOH . U 7 HOH B 23 423 280 HOH HOH . U 7 HOH B 24 424 303 HOH HOH . U 7 HOH B 25 425 281 HOH HOH . U 7 HOH B 26 426 272 HOH HOH . U 7 HOH B 27 427 322 HOH HOH . U 7 HOH B 28 428 285 HOH HOH . U 7 HOH B 29 429 299 HOH HOH . U 7 HOH B 30 430 271 HOH HOH . U 7 HOH B 31 431 288 HOH HOH . U 7 HOH B 32 432 301 HOH HOH . U 7 HOH B 33 433 313 HOH HOH . U 7 HOH B 34 434 292 HOH HOH . U 7 HOH B 35 435 307 HOH HOH . U 7 HOH B 36 436 323 HOH HOH . U 7 HOH B 37 437 284 HOH HOH . U 7 HOH B 38 438 305 HOH HOH . U 7 HOH B 39 439 276 HOH HOH . U 7 HOH B 40 440 318 HOH HOH . U 7 HOH B 41 441 320 HOH HOH . U 7 HOH B 42 442 295 HOH HOH . U 7 HOH B 43 443 286 HOH HOH . U 7 HOH B 44 444 315 HOH HOH . U 7 HOH B 45 445 279 HOH HOH . U 7 HOH B 46 446 298 HOH HOH . U 7 HOH B 47 447 306 HOH HOH . U 7 HOH B 48 448 279 HOH HOH . U 7 HOH B 49 449 277 HOH HOH . U 7 HOH B 50 450 308 HOH HOH . U 7 HOH B 51 451 289 HOH HOH . U 7 HOH B 52 452 302 HOH HOH . U 7 HOH B 53 453 300 HOH HOH . U 7 HOH B 54 454 304 HOH HOH . V 7 HOH C 1 401 294 HOH HOH . V 7 HOH C 2 402 300 HOH HOH . V 7 HOH C 3 403 279 HOH HOH . V 7 HOH C 4 404 270 HOH HOH . V 7 HOH C 5 405 298 HOH HOH . V 7 HOH C 6 406 288 HOH HOH . V 7 HOH C 7 407 295 HOH HOH . V 7 HOH C 8 408 296 HOH HOH . V 7 HOH C 9 409 280 HOH HOH . V 7 HOH C 10 410 301 HOH HOH . V 7 HOH C 11 411 281 HOH HOH . V 7 HOH C 12 412 292 HOH HOH . V 7 HOH C 13 413 291 HOH HOH . V 7 HOH C 14 414 274 HOH HOH . V 7 HOH C 15 415 286 HOH HOH . V 7 HOH C 16 416 302 HOH HOH . V 7 HOH C 17 417 293 HOH HOH . V 7 HOH C 18 418 271 HOH HOH . V 7 HOH C 19 419 282 HOH HOH . V 7 HOH C 20 420 272 HOH HOH . V 7 HOH C 21 421 290 HOH HOH . V 7 HOH C 22 422 299 HOH HOH . V 7 HOH C 23 423 278 HOH HOH . V 7 HOH C 24 424 275 HOH HOH . V 7 HOH C 25 425 284 HOH HOH . V 7 HOH C 26 426 283 HOH HOH . V 7 HOH C 27 427 289 HOH HOH . V 7 HOH C 28 428 276 HOH HOH . V 7 HOH C 29 429 273 HOH HOH . V 7 HOH C 30 430 277 HOH HOH . V 7 HOH C 31 431 285 HOH HOH . V 7 HOH C 32 432 287 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . H 2 10.367 39.698 -21.861 1 101.44 ? PG GTP 301 B 1 HETATM 2 O O1G GTP . . . H 2 9.982 40.762 -22.861 1 101.99 1 O1G GTP 301 B 1 HETATM 3 O O2G GTP . . . H 2 11.783 39.24 -22.123 1 106.43 ? O2G GTP 301 B 1 HETATM 4 O O3G GTP . . . H 2 9.433 38.52 -21.998 1 101.03 1 O3G GTP 301 B 1 HETATM 5 O O3B GTP . . . H 2 10.237 40.32 -20.34 1 96.5 ? O3B GTP 301 B 1 HETATM 6 P PB GTP . . . H 2 8.939 41.222 -19.881 1 83.87 ? PB GTP 301 B 1 HETATM 7 O O1B GTP . . . H 2 9.401 42.562 -19.361 1 85.08 1 O1B GTP 301 B 1 HETATM 8 O O2B GTP . . . H 2 8.15 40.495 -18.816 1 80.69 1 O2B GTP 301 B 1 HETATM 9 O O3A GTP . . . H 2 7.981 41.425 -21.198 1 71.27 ? O3A GTP 301 B 1 HETATM 10 P PA GTP . . . H 2 6.521 42.168 -21.107 1 61.14 ? PA GTP 301 B 1 HETATM 11 O O1A GTP . . . H 2 5.605 41.611 -22.171 1 61.24 1 O1A GTP 301 B 1 HETATM 12 O O2A GTP . . . H 2 5.912 41.935 -19.747 1 60.93 1 O2A GTP 301 B 1 HETATM 13 O O5' GTP . . . H 2 6.782 43.777 -21.334 1 53.11 ? O5' GTP 301 B 1 HETATM 14 C C5' GTP . . . H 2 5.684 44.638 -21.401 1 48.61 ? C5' GTP 301 B 1 HETATM 15 C C4' GTP . . . H 2 5.952 45.608 -22.492 1 43.55 ? C4' GTP 301 B 1 HETATM 16 O O4' GTP . . . H 2 7.117 45.345 -23.009 1 42.57 ? O4' GTP 301 B 1 HETATM 17 C C3' GTP . . . H 2 4.891 45.364 -23.749 1 41.2 ? C3' GTP 301 B 1 HETATM 18 O O3' GTP . . . H 2 3.575 45.966 -23.461 1 40.05 ? O3' GTP 301 B 1 HETATM 19 C C2' GTP . . . H 2 5.428 45.903 -24.729 1 40.23 ? C2' GTP 301 B 1 HETATM 20 O O2' GTP . . . H 2 4.998 47.335 -24.819 1 42.59 ? O2' GTP 301 B 1 HETATM 21 C C1' GTP . . . H 2 7.004 45.901 -24.409 1 40.24 ? C1' GTP 301 B 1 HETATM 22 N N9 GTP . . . H 2 7.75 45.286 -25.332 1 40.02 ? N9 GTP 301 B 1 HETATM 23 C C8 GTP . . . H 2 7.45 44.036 -24.91 1 38.9 ? C8 GTP 301 B 1 HETATM 24 N N7 GTP . . . H 2 8.107 43.161 -25.701 1 36.81 ? N7 GTP 301 B 1 HETATM 25 C C5 GTP . . . H 2 8.805 43.859 -26.594 1 38.03 ? C5 GTP 301 B 1 HETATM 26 C C6 GTP . . . H 2 9.735 43.442 -27.738 1 38.21 ? C6 GTP 301 B 1 HETATM 27 O O6 GTP . . . H 2 9.937 42.296 -27.948 1 40.17 ? O6 GTP 301 B 1 HETATM 28 N N1 GTP . . . H 2 10.361 44.435 -28.552 1 37.35 ? N1 GTP 301 B 1 HETATM 29 C C2 GTP . . . H 2 10.116 45.834 -28.296 1 36.47 ? C2 GTP 301 B 1 HETATM 30 N N2 GTP . . . H 2 10.743 46.857 -29.111 1 36.29 ? N2 GTP 301 B 1 HETATM 31 N N3 GTP . . . H 2 9.23 46.224 -27.205 1 37.62 ? N3 GTP 301 B 1 HETATM 32 C C4 GTP . . . H 2 8.58 45.182 -26.36 1 38.66 ? C4 GTP 301 B 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 386 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #