data_5GOZ
#
_model_server_result.job_id            8tAHhdbFb51ERrwQtphACQ 
_model_server_result.datetime_utc      '2024-11-24 12:03:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5goz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":302}' 
#
_entry.id    5GOZ 
#
_exptl.entry_id    5GOZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5GOZ 
_cell.length_a            123.79 
_cell.length_b            123.79 
_cell.length_c            120.14 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GOZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,T 1 1 
B,H,I,J,K,L,M,U 2 1 
C,N,O,P,Q,R,S,V 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 I N N 
? 3 P N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             30 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              29 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            L 
_struct_conn.ptnr2_label_atom_id            O4 
_struct_conn.ptnr2_label_comp_id            PO4 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             PO4 
_struct_conn.ptnr2_auth_seq_id              305 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.297 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5GOZ 
_atom_sites.fract_transf_matrix[1][1]    0.008078 
_atom_sites.fract_transf_matrix[1][2]    0.004664 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009328 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008324 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 GTP A 1 301 266 GTP GTP . 
E 3 SAH A 1 302 267 SAH SAH . 
F 4 PO4 A 1 303 268 PO4 PO4 . 
G 4 PO4 A 1 304 269 PO4 PO4 . 
H 2 GTP B 1 301 265 GTP GTP . 
I 3 SAH B 1 302 266 SAH SAH . 
J 5 SIN B 1 303 267 SIN SIN . 
K 5 SIN B 1 304 268 SIN SIN . 
L 4 PO4 B 1 305 269 PO4 PO4 . 
M 4 PO4 B 1 306 270 PO4 PO4 . 
N 2 GTP C 1 301 265 GTP GTP . 
O 2 GTP C 1 302 268 GTP GTP . 
P 3 SAH C 1 303 266 SAH SAH . 
Q 5 SIN C 1 304 267 SIN SIN . 
R 6 POP C 1 305 268 POP POP . 
S 4 PO4 C 1 306 269 PO4 PO4 . 
T 7 HOH A 1 401 328 HOH HOH . 
T 7 HOH A 2 402 329 HOH HOH . 
T 7 HOH A 3 403 270 HOH HOH . 
T 7 HOH A 4 404 293 HOH HOH . 
T 7 HOH A 5 405 306 HOH HOH . 
T 7 HOH A 6 406 298 HOH HOH . 
T 7 HOH A 7 407 318 HOH HOH . 
T 7 HOH A 8 408 332 HOH HOH . 
T 7 HOH A 9 409 316 HOH HOH . 
T 7 HOH A 10 410 305 HOH HOH . 
T 7 HOH A 11 411 289 HOH HOH . 
T 7 HOH A 12 412 325 HOH HOH . 
T 7 HOH A 13 413 283 HOH HOH . 
T 7 HOH A 14 414 271 HOH HOH . 
T 7 HOH A 15 415 312 HOH HOH . 
T 7 HOH A 16 416 310 HOH HOH . 
T 7 HOH A 17 417 284 HOH HOH . 
T 7 HOH A 18 418 302 HOH HOH . 
T 7 HOH A 19 419 297 HOH HOH . 
T 7 HOH A 20 420 287 HOH HOH . 
T 7 HOH A 21 421 311 HOH HOH . 
T 7 HOH A 22 422 288 HOH HOH . 
T 7 HOH A 23 423 281 HOH HOH . 
T 7 HOH A 24 424 327 HOH HOH . 
T 7 HOH A 25 425 331 HOH HOH . 
T 7 HOH A 26 426 294 HOH HOH . 
T 7 HOH A 27 427 286 HOH HOH . 
T 7 HOH A 28 428 309 HOH HOH . 
T 7 HOH A 29 429 275 HOH HOH . 
T 7 HOH A 30 430 319 HOH HOH . 
T 7 HOH A 31 431 292 HOH HOH . 
T 7 HOH A 32 432 333 HOH HOH . 
T 7 HOH A 33 433 326 HOH HOH . 
T 7 HOH A 34 434 301 HOH HOH . 
T 7 HOH A 35 435 304 HOH HOH . 
T 7 HOH A 36 436 274 HOH HOH . 
T 7 HOH A 37 437 276 HOH HOH . 
T 7 HOH A 38 438 272 HOH HOH . 
T 7 HOH A 39 439 321 HOH HOH . 
T 7 HOH A 40 440 307 HOH HOH . 
T 7 HOH A 41 441 296 HOH HOH . 
T 7 HOH A 42 442 295 HOH HOH . 
T 7 HOH A 43 443 290 HOH HOH . 
T 7 HOH A 44 444 320 HOH HOH . 
T 7 HOH A 45 445 297 HOH HOH . 
T 7 HOH A 46 446 324 HOH HOH . 
T 7 HOH A 47 447 277 HOH HOH . 
T 7 HOH A 48 448 278 HOH HOH . 
T 7 HOH A 49 449 330 HOH HOH . 
T 7 HOH A 50 450 283 HOH HOH . 
T 7 HOH A 51 451 334 HOH HOH . 
T 7 HOH A 52 452 291 HOH HOH . 
T 7 HOH A 53 453 305 HOH HOH . 
T 7 HOH A 54 454 317 HOH HOH . 
T 7 HOH A 55 455 303 HOH HOH . 
T 7 HOH A 56 456 280 HOH HOH . 
T 7 HOH A 57 457 273 HOH HOH . 
T 7 HOH A 58 458 314 HOH HOH . 
T 7 HOH A 59 459 282 HOH HOH . 
T 7 HOH A 60 460 300 HOH HOH . 
T 7 HOH A 61 461 285 HOH HOH . 
T 7 HOH A 62 462 315 HOH HOH . 
T 7 HOH A 63 463 308 HOH HOH . 
T 7 HOH A 64 464 323 HOH HOH . 
T 7 HOH A 65 465 322 HOH HOH . 
T 7 HOH A 66 466 309 HOH HOH . 
T 7 HOH A 67 467 275 HOH HOH . 
T 7 HOH A 68 468 313 HOH HOH . 
T 7 HOH A 69 469 311 HOH HOH . 
T 7 HOH A 70 470 299 HOH HOH . 
U 7 HOH B 1 401 321 HOH HOH . 
U 7 HOH B 2 402 274 HOH HOH . 
U 7 HOH B 3 403 304 HOH HOH . 
U 7 HOH B 4 404 297 HOH HOH . 
U 7 HOH B 5 405 319 HOH HOH . 
U 7 HOH B 6 406 296 HOH HOH . 
U 7 HOH B 7 407 293 HOH HOH . 
U 7 HOH B 8 408 291 HOH HOH . 
U 7 HOH B 9 409 306 HOH HOH . 
U 7 HOH B 10 410 294 HOH HOH . 
U 7 HOH B 11 411 324 HOH HOH . 
U 7 HOH B 12 412 303 HOH HOH . 
U 7 HOH B 13 413 273 HOH HOH . 
U 7 HOH B 14 414 278 HOH HOH . 
U 7 HOH B 15 415 287 HOH HOH . 
U 7 HOH B 16 416 312 HOH HOH . 
U 7 HOH B 17 417 290 HOH HOH . 
U 7 HOH B 18 418 316 HOH HOH . 
U 7 HOH B 19 419 282 HOH HOH . 
U 7 HOH B 20 420 317 HOH HOH . 
U 7 HOH B 21 421 310 HOH HOH . 
U 7 HOH B 22 422 314 HOH HOH . 
U 7 HOH B 23 423 280 HOH HOH . 
U 7 HOH B 24 424 303 HOH HOH . 
U 7 HOH B 25 425 281 HOH HOH . 
U 7 HOH B 26 426 272 HOH HOH . 
U 7 HOH B 27 427 322 HOH HOH . 
U 7 HOH B 28 428 285 HOH HOH . 
U 7 HOH B 29 429 299 HOH HOH . 
U 7 HOH B 30 430 271 HOH HOH . 
U 7 HOH B 31 431 288 HOH HOH . 
U 7 HOH B 32 432 301 HOH HOH . 
U 7 HOH B 33 433 313 HOH HOH . 
U 7 HOH B 34 434 292 HOH HOH . 
U 7 HOH B 35 435 307 HOH HOH . 
U 7 HOH B 36 436 323 HOH HOH . 
U 7 HOH B 37 437 284 HOH HOH . 
U 7 HOH B 38 438 305 HOH HOH . 
U 7 HOH B 39 439 276 HOH HOH . 
U 7 HOH B 40 440 318 HOH HOH . 
U 7 HOH B 41 441 320 HOH HOH . 
U 7 HOH B 42 442 295 HOH HOH . 
U 7 HOH B 43 443 286 HOH HOH . 
U 7 HOH B 44 444 315 HOH HOH . 
U 7 HOH B 45 445 279 HOH HOH . 
U 7 HOH B 46 446 298 HOH HOH . 
U 7 HOH B 47 447 306 HOH HOH . 
U 7 HOH B 48 448 279 HOH HOH . 
U 7 HOH B 49 449 277 HOH HOH . 
U 7 HOH B 50 450 308 HOH HOH . 
U 7 HOH B 51 451 289 HOH HOH . 
U 7 HOH B 52 452 302 HOH HOH . 
U 7 HOH B 53 453 300 HOH HOH . 
U 7 HOH B 54 454 304 HOH HOH . 
V 7 HOH C 1 401 294 HOH HOH . 
V 7 HOH C 2 402 300 HOH HOH . 
V 7 HOH C 3 403 279 HOH HOH . 
V 7 HOH C 4 404 270 HOH HOH . 
V 7 HOH C 5 405 298 HOH HOH . 
V 7 HOH C 6 406 288 HOH HOH . 
V 7 HOH C 7 407 295 HOH HOH . 
V 7 HOH C 8 408 296 HOH HOH . 
V 7 HOH C 9 409 280 HOH HOH . 
V 7 HOH C 10 410 301 HOH HOH . 
V 7 HOH C 11 411 281 HOH HOH . 
V 7 HOH C 12 412 292 HOH HOH . 
V 7 HOH C 13 413 291 HOH HOH . 
V 7 HOH C 14 414 274 HOH HOH . 
V 7 HOH C 15 415 286 HOH HOH . 
V 7 HOH C 16 416 302 HOH HOH . 
V 7 HOH C 17 417 293 HOH HOH . 
V 7 HOH C 18 418 271 HOH HOH . 
V 7 HOH C 19 419 282 HOH HOH . 
V 7 HOH C 20 420 272 HOH HOH . 
V 7 HOH C 21 421 290 HOH HOH . 
V 7 HOH C 22 422 299 HOH HOH . 
V 7 HOH C 23 423 278 HOH HOH . 
V 7 HOH C 24 424 275 HOH HOH . 
V 7 HOH C 25 425 284 HOH HOH . 
V 7 HOH C 26 426 283 HOH HOH . 
V 7 HOH C 27 427 289 HOH HOH . 
V 7 HOH C 28 428 276 HOH HOH . 
V 7 HOH C 29 429 273 HOH HOH . 
V 7 HOH C 30 430 277 HOH HOH . 
V 7 HOH C 31 431 285 HOH HOH . 
V 7 HOH C 32 432 287 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . E 3 29.485 56.185 13.5 1 56.34 ? N SAH 302 A 1 
HETATM 2 C CA SAH . . . E 3 30.706 55.622 12.937 1 55.47 ? CA SAH 302 A 1 
HETATM 3 C CB SAH . . . E 3 30.612 55.548 11.418 1 61.27 ? CB SAH 302 A 1 
HETATM 4 C CG SAH . . . E 3 29.563 54.556 10.927 1 69.29 ? CG SAH 302 A 1 
HETATM 5 S SD SAH . . . E 3 29.24 54.693 9.153 1 74.01 ? SD SAH 302 A 1 
HETATM 6 C C SAH . . . E 3 31.944 56.397 13.374 1 49.94 ? C SAH 302 A 1 
HETATM 7 O O SAH . . . E 3 33.074 56.019 13.065 1 48.2 ? O SAH 302 A 1 
HETATM 8 O OXT SAH . . . E 3 31.841 57.42 14.049 1 48.4 1 OXT SAH 302 A 1 
HETATM 9 C C5' SAH . . . E 3 28.038 53.342 9.238 1 65.9 ? C5' SAH 302 A 1 
HETATM 10 C C4' SAH . . . E 3 28.692 51.968 9.158 1 60.55 ? C4' SAH 302 A 1 
HETATM 11 O O4' SAH . . . E 3 27.691 50.973 9.142 1 58.64 ? O4' SAH 302 A 1 
HETATM 12 C C3' SAH . . . E 3 29.521 51.778 7.897 1 58.44 ? C3' SAH 302 A 1 
HETATM 13 O O3' SAH . . . E 3 30.856 51.515 8.257 1 57.42 ? O3' SAH 302 A 1 
HETATM 14 C C2' SAH . . . E 3 28.946 50.561 7.204 1 55.35 ? C2' SAH 302 A 1 
HETATM 15 O O2' SAH . . . E 3 29.976 49.675 6.834 1 56.02 ? O2' SAH 302 A 1 
HETATM 16 C C1' SAH . . . E 3 28.056 49.93 8.261 1 56.32 ? C1' SAH 302 A 1 
HETATM 17 N N9 SAH . . . E 3 26.855 49.295 7.685 1 53.23 ? N9 SAH 302 A 1 
HETATM 18 C C8 SAH . . . E 3 26.194 49.639 6.535 1 52.55 ? C8 SAH 302 A 1 
HETATM 19 N N7 SAH . . . E 3 25.143 48.799 6.379 1 52.3 ? N7 SAH 302 A 1 
HETATM 20 C C5 SAH . . . E 3 25.125 47.925 7.413 1 52.68 ? C5 SAH 302 A 1 
HETATM 21 C C6 SAH . . . E 3 24.282 46.87 7.748 1 53.75 ? C6 SAH 302 A 1 
HETATM 22 N N6 SAH . . . E 3 23.249 46.56 6.97 1 57.12 ? N6 SAH 302 A 1 
HETATM 23 N N1 SAH . . . E 3 24.52 46.14 8.894 1 53.74 ? N1 SAH 302 A 1 
HETATM 24 C C2 SAH . . . E 3 25.592 46.462 9.699 1 53.86 ? C2 SAH 302 A 1 
HETATM 25 N N3 SAH . . . E 3 26.423 47.508 9.362 1 53.43 ? N3 SAH 302 A 1 
HETATM 26 C C4 SAH . . . E 3 26.196 48.228 8.239 1 52.66 ? C4 SAH 302 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           382 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#