data_5GOZ # _model_server_result.job_id VhjDzTki4uutNLaPzwkwgA _model_server_result.datetime_utc '2024-11-28 05:25:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5goz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":302}' # _entry.id 5GOZ # _exptl.entry_id 5GOZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5GOZ _cell.length_a 123.79 _cell.length_b 123.79 _cell.length_c 120.14 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GOZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,T 1 1 B,H,I,J,K,L,M,U 2 1 C,N,O,P,Q,R,S,V 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N ? 3 P N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 30 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 29 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id L _struct_conn.ptnr2_label_atom_id O4 _struct_conn.ptnr2_label_comp_id PO4 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id PO4 _struct_conn.ptnr2_auth_seq_id 305 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.297 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5GOZ _atom_sites.fract_transf_matrix[1][1] 0.008078 _atom_sites.fract_transf_matrix[1][2] 0.004664 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009328 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GTP A 1 301 266 GTP GTP . E 3 SAH A 1 302 267 SAH SAH . F 4 PO4 A 1 303 268 PO4 PO4 . G 4 PO4 A 1 304 269 PO4 PO4 . H 2 GTP B 1 301 265 GTP GTP . I 3 SAH B 1 302 266 SAH SAH . J 5 SIN B 1 303 267 SIN SIN . K 5 SIN B 1 304 268 SIN SIN . L 4 PO4 B 1 305 269 PO4 PO4 . M 4 PO4 B 1 306 270 PO4 PO4 . N 2 GTP C 1 301 265 GTP GTP . O 2 GTP C 1 302 268 GTP GTP . P 3 SAH C 1 303 266 SAH SAH . Q 5 SIN C 1 304 267 SIN SIN . R 6 POP C 1 305 268 POP POP . S 4 PO4 C 1 306 269 PO4 PO4 . T 7 HOH A 1 401 328 HOH HOH . T 7 HOH A 2 402 329 HOH HOH . T 7 HOH A 3 403 270 HOH HOH . T 7 HOH A 4 404 293 HOH HOH . T 7 HOH A 5 405 306 HOH HOH . T 7 HOH A 6 406 298 HOH HOH . T 7 HOH A 7 407 318 HOH HOH . T 7 HOH A 8 408 332 HOH HOH . T 7 HOH A 9 409 316 HOH HOH . T 7 HOH A 10 410 305 HOH HOH . T 7 HOH A 11 411 289 HOH HOH . T 7 HOH A 12 412 325 HOH HOH . T 7 HOH A 13 413 283 HOH HOH . T 7 HOH A 14 414 271 HOH HOH . T 7 HOH A 15 415 312 HOH HOH . T 7 HOH A 16 416 310 HOH HOH . T 7 HOH A 17 417 284 HOH HOH . T 7 HOH A 18 418 302 HOH HOH . T 7 HOH A 19 419 297 HOH HOH . T 7 HOH A 20 420 287 HOH HOH . T 7 HOH A 21 421 311 HOH HOH . T 7 HOH A 22 422 288 HOH HOH . T 7 HOH A 23 423 281 HOH HOH . T 7 HOH A 24 424 327 HOH HOH . T 7 HOH A 25 425 331 HOH HOH . T 7 HOH A 26 426 294 HOH HOH . T 7 HOH A 27 427 286 HOH HOH . T 7 HOH A 28 428 309 HOH HOH . T 7 HOH A 29 429 275 HOH HOH . T 7 HOH A 30 430 319 HOH HOH . T 7 HOH A 31 431 292 HOH HOH . T 7 HOH A 32 432 333 HOH HOH . T 7 HOH A 33 433 326 HOH HOH . T 7 HOH A 34 434 301 HOH HOH . T 7 HOH A 35 435 304 HOH HOH . T 7 HOH A 36 436 274 HOH HOH . T 7 HOH A 37 437 276 HOH HOH . T 7 HOH A 38 438 272 HOH HOH . T 7 HOH A 39 439 321 HOH HOH . T 7 HOH A 40 440 307 HOH HOH . T 7 HOH A 41 441 296 HOH HOH . T 7 HOH A 42 442 295 HOH HOH . T 7 HOH A 43 443 290 HOH HOH . T 7 HOH A 44 444 320 HOH HOH . T 7 HOH A 45 445 297 HOH HOH . T 7 HOH A 46 446 324 HOH HOH . T 7 HOH A 47 447 277 HOH HOH . T 7 HOH A 48 448 278 HOH HOH . T 7 HOH A 49 449 330 HOH HOH . T 7 HOH A 50 450 283 HOH HOH . T 7 HOH A 51 451 334 HOH HOH . T 7 HOH A 52 452 291 HOH HOH . T 7 HOH A 53 453 305 HOH HOH . T 7 HOH A 54 454 317 HOH HOH . T 7 HOH A 55 455 303 HOH HOH . T 7 HOH A 56 456 280 HOH HOH . T 7 HOH A 57 457 273 HOH HOH . T 7 HOH A 58 458 314 HOH HOH . T 7 HOH A 59 459 282 HOH HOH . T 7 HOH A 60 460 300 HOH HOH . T 7 HOH A 61 461 285 HOH HOH . T 7 HOH A 62 462 315 HOH HOH . T 7 HOH A 63 463 308 HOH HOH . T 7 HOH A 64 464 323 HOH HOH . T 7 HOH A 65 465 322 HOH HOH . T 7 HOH A 66 466 309 HOH HOH . T 7 HOH A 67 467 275 HOH HOH . T 7 HOH A 68 468 313 HOH HOH . T 7 HOH A 69 469 311 HOH HOH . T 7 HOH A 70 470 299 HOH HOH . U 7 HOH B 1 401 321 HOH HOH . U 7 HOH B 2 402 274 HOH HOH . U 7 HOH B 3 403 304 HOH HOH . U 7 HOH B 4 404 297 HOH HOH . U 7 HOH B 5 405 319 HOH HOH . U 7 HOH B 6 406 296 HOH HOH . U 7 HOH B 7 407 293 HOH HOH . U 7 HOH B 8 408 291 HOH HOH . U 7 HOH B 9 409 306 HOH HOH . U 7 HOH B 10 410 294 HOH HOH . U 7 HOH B 11 411 324 HOH HOH . U 7 HOH B 12 412 303 HOH HOH . U 7 HOH B 13 413 273 HOH HOH . U 7 HOH B 14 414 278 HOH HOH . U 7 HOH B 15 415 287 HOH HOH . U 7 HOH B 16 416 312 HOH HOH . U 7 HOH B 17 417 290 HOH HOH . U 7 HOH B 18 418 316 HOH HOH . U 7 HOH B 19 419 282 HOH HOH . U 7 HOH B 20 420 317 HOH HOH . U 7 HOH B 21 421 310 HOH HOH . U 7 HOH B 22 422 314 HOH HOH . U 7 HOH B 23 423 280 HOH HOH . U 7 HOH B 24 424 303 HOH HOH . U 7 HOH B 25 425 281 HOH HOH . U 7 HOH B 26 426 272 HOH HOH . U 7 HOH B 27 427 322 HOH HOH . U 7 HOH B 28 428 285 HOH HOH . U 7 HOH B 29 429 299 HOH HOH . U 7 HOH B 30 430 271 HOH HOH . U 7 HOH B 31 431 288 HOH HOH . U 7 HOH B 32 432 301 HOH HOH . U 7 HOH B 33 433 313 HOH HOH . U 7 HOH B 34 434 292 HOH HOH . U 7 HOH B 35 435 307 HOH HOH . U 7 HOH B 36 436 323 HOH HOH . U 7 HOH B 37 437 284 HOH HOH . U 7 HOH B 38 438 305 HOH HOH . U 7 HOH B 39 439 276 HOH HOH . U 7 HOH B 40 440 318 HOH HOH . U 7 HOH B 41 441 320 HOH HOH . U 7 HOH B 42 442 295 HOH HOH . U 7 HOH B 43 443 286 HOH HOH . U 7 HOH B 44 444 315 HOH HOH . U 7 HOH B 45 445 279 HOH HOH . U 7 HOH B 46 446 298 HOH HOH . U 7 HOH B 47 447 306 HOH HOH . U 7 HOH B 48 448 279 HOH HOH . U 7 HOH B 49 449 277 HOH HOH . U 7 HOH B 50 450 308 HOH HOH . U 7 HOH B 51 451 289 HOH HOH . U 7 HOH B 52 452 302 HOH HOH . U 7 HOH B 53 453 300 HOH HOH . U 7 HOH B 54 454 304 HOH HOH . V 7 HOH C 1 401 294 HOH HOH . V 7 HOH C 2 402 300 HOH HOH . V 7 HOH C 3 403 279 HOH HOH . V 7 HOH C 4 404 270 HOH HOH . V 7 HOH C 5 405 298 HOH HOH . V 7 HOH C 6 406 288 HOH HOH . V 7 HOH C 7 407 295 HOH HOH . V 7 HOH C 8 408 296 HOH HOH . V 7 HOH C 9 409 280 HOH HOH . V 7 HOH C 10 410 301 HOH HOH . V 7 HOH C 11 411 281 HOH HOH . V 7 HOH C 12 412 292 HOH HOH . V 7 HOH C 13 413 291 HOH HOH . V 7 HOH C 14 414 274 HOH HOH . V 7 HOH C 15 415 286 HOH HOH . V 7 HOH C 16 416 302 HOH HOH . V 7 HOH C 17 417 293 HOH HOH . V 7 HOH C 18 418 271 HOH HOH . V 7 HOH C 19 419 282 HOH HOH . V 7 HOH C 20 420 272 HOH HOH . V 7 HOH C 21 421 290 HOH HOH . V 7 HOH C 22 422 299 HOH HOH . V 7 HOH C 23 423 278 HOH HOH . V 7 HOH C 24 424 275 HOH HOH . V 7 HOH C 25 425 284 HOH HOH . V 7 HOH C 26 426 283 HOH HOH . V 7 HOH C 27 427 289 HOH HOH . V 7 HOH C 28 428 276 HOH HOH . V 7 HOH C 29 429 273 HOH HOH . V 7 HOH C 30 430 277 HOH HOH . V 7 HOH C 31 431 285 HOH HOH . V 7 HOH C 32 432 287 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . I 3 0.783 38.068 -6.472 1 72.32 ? N SAH 302 B 1 HETATM 2 C CA SAH . . . I 3 1.273 36.858 -7.126 1 70.28 ? CA SAH 302 B 1 HETATM 3 C CB SAH . . . I 3 1.284 37.029 -8.643 1 72.65 ? CB SAH 302 B 1 HETATM 4 C CG SAH . . . I 3 -0.063 37.466 -9.209 1 77.72 ? CG SAH 302 B 1 HETATM 5 S SD SAH . . . I 3 0.027 38.017 -10.929 1 84.69 ? SD SAH 302 B 1 HETATM 6 C C SAH . . . I 3 2.642 36.429 -6.604 1 66.94 ? C SAH 302 B 1 HETATM 7 O O SAH . . . I 3 3.092 35.308 -6.846 1 66.4 ? O SAH 302 B 1 HETATM 8 O OXT SAH . . . I 3 3.328 37.188 -5.922 1 66.58 1 OXT SAH 302 B 1 HETATM 9 C C5' SAH . . . I 3 -1.755 38.335 -10.937 1 75.6 ? C5' SAH 302 B 1 HETATM 10 C C4' SAH . . . I 3 -2.582 37.06 -10.845 1 67.98 ? C4' SAH 302 B 1 HETATM 11 O O4' SAH . . . I 3 -3.956 37.377 -10.883 1 66.62 ? O4' SAH 302 B 1 HETATM 12 C C3' SAH . . . I 3 -2.324 36.119 -12.006 1 63.49 ? C3' SAH 302 B 1 HETATM 13 O O3' SAH . . . I 3 -2.06 34.854 -11.465 1 63.05 ? O3' SAH 302 B 1 HETATM 14 C C2' SAH . . . I 3 -3.627 36.036 -12.767 1 60.77 ? C2' SAH 302 B 1 HETATM 15 O O2' SAH . . . I 3 -3.886 34.712 -13.164 1 58.59 ? O2' SAH 302 B 1 HETATM 16 C C1' SAH . . . I 3 -4.644 36.485 -11.738 1 61.93 ? C1' SAH 302 B 1 HETATM 17 N N9 SAH . . . I 3 -5.802 37.162 -12.342 1 60.79 ? N9 SAH 302 B 1 HETATM 18 C C8 SAH . . . I 3 -5.862 37.851 -13.526 1 61.09 ? C8 SAH 302 B 1 HETATM 19 N N7 SAH . . . I 3 -7.126 38.316 -13.682 1 61.97 ? N7 SAH 302 B 1 HETATM 20 C C5 SAH . . . I 3 -7.866 37.935 -12.615 1 61.56 ? C5 SAH 302 B 1 HETATM 21 C C6 SAH . . . I 3 -9.196 38.133 -12.263 1 61.16 ? C6 SAH 302 B 1 HETATM 22 N N6 SAH . . . I 3 -10.009 38.824 -13.056 1 63.8 ? N6 SAH 302 B 1 HETATM 23 N N1 SAH . . . I 3 -9.673 37.608 -11.08 1 62.35 ? N1 SAH 302 B 1 HETATM 24 C C2 SAH . . . I 3 -8.832 36.891 -10.256 1 63.21 ? C2 SAH 302 B 1 HETATM 25 N N3 SAH . . . I 3 -7.515 36.699 -10.611 1 63 ? N3 SAH 302 B 1 HETATM 26 C C4 SAH . . . I 3 -7.042 37.21 -11.769 1 60.87 ? C4 SAH 302 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #