data_5GP1
#
_model_server_result.job_id            f3EzzCHCozzErmkx06ymNA 
_model_server_result.datetime_utc      '2024-11-08 03:05:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gp1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":303}' 
#
_entry.id    5GP1 
#
_exptl.entry_id    5GP1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              787.441 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5GP1 
_cell.length_a            123.77 
_cell.length_b            123.77 
_cell.length_c            119.36 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GP1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,S 1 1 
B,K,L,M,N,T 2 1 
C,O,P,Q,R,U 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 M N N 
? 3 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 30 A LYS 29 1_555 D O3 SO4 . A SO4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 ? 
covale ? covale2 A NE ARG 42 A ARG 41 1_555 E O3 SO4 . A SO4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? 
#
_chem_comp.formula           'C21 H30 N10 O17 P3 1' 
_chem_comp.formula_weight    787.441 
_chem_comp.id                GTA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     7-METHYL-GPPPA 
#
_atom_sites.entry_id                     5GP1 
_atom_sites.fract_transf_matrix[1][1]    0.00808 
_atom_sites.fract_transf_matrix[1][2]    0.004665 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009329 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008378 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 SO4 A 1 301 267 SO4 SO4 . 
E 2 SO4 A 1 302 268 SO4 SO4 . 
F 2 SO4 A 1 303 269 SO4 SO4 . 
G 2 SO4 A 1 304 270 SO4 SO4 . 
H 2 SO4 A 1 305 297 SO4 SO4 . 
I 3 GTA A 1 306 266 GTA GTA . 
J 4 SAH A 1 307 298 SAH SAH . 
K 2 SO4 B 1 301 267 SO4 SO4 . 
L 2 SO4 B 1 302 285 SO4 SO4 . 
M 3 GTA B 1 303 266 GTA GTA . 
N 4 SAH B 1 304 286 SAH SAH . 
O 2 SO4 C 1 301 266 SO4 SO4 . 
P 5 NI C 1 302 288 NI NI . 
Q 3 GTA C 1 303 265 GTA GTA . 
R 4 SAH C 1 304 289 SAH SAH . 
S 6 HOH A 1 401 286 HOH HOH . 
S 6 HOH A 2 402 287 HOH HOH . 
S 6 HOH A 3 403 282 HOH HOH . 
S 6 HOH A 4 404 281 HOH HOH . 
S 6 HOH A 5 405 302 HOH HOH . 
S 6 HOH A 6 406 283 HOH HOH . 
S 6 HOH A 7 407 272 HOH HOH . 
S 6 HOH A 8 408 292 HOH HOH . 
S 6 HOH A 9 409 277 HOH HOH . 
S 6 HOH A 10 410 278 HOH HOH . 
S 6 HOH A 11 411 274 HOH HOH . 
S 6 HOH A 12 412 285 HOH HOH . 
S 6 HOH A 13 413 299 HOH HOH . 
S 6 HOH A 14 414 279 HOH HOH . 
S 6 HOH A 15 415 291 HOH HOH . 
S 6 HOH A 16 416 294 HOH HOH . 
S 6 HOH A 17 417 289 HOH HOH . 
S 6 HOH A 18 418 295 HOH HOH . 
S 6 HOH A 19 419 290 HOH HOH . 
S 6 HOH A 20 420 284 HOH HOH . 
S 6 HOH A 21 421 288 HOH HOH . 
S 6 HOH A 22 422 276 HOH HOH . 
S 6 HOH A 23 423 293 HOH HOH . 
S 6 HOH A 24 424 296 HOH HOH . 
S 6 HOH A 25 425 280 HOH HOH . 
S 6 HOH A 26 426 300 HOH HOH . 
S 6 HOH A 27 427 273 HOH HOH . 
S 6 HOH A 28 428 271 HOH HOH . 
S 6 HOH A 29 429 303 HOH HOH . 
S 6 HOH A 30 430 301 HOH HOH . 
S 6 HOH A 31 431 275 HOH HOH . 
T 6 HOH B 1 401 275 HOH HOH . 
T 6 HOH B 2 402 278 HOH HOH . 
T 6 HOH B 3 403 270 HOH HOH . 
T 6 HOH B 4 404 287 HOH HOH . 
T 6 HOH B 5 405 284 HOH HOH . 
T 6 HOH B 6 406 277 HOH HOH . 
T 6 HOH B 7 407 272 HOH HOH . 
T 6 HOH B 8 408 279 HOH HOH . 
T 6 HOH B 9 409 268 HOH HOH . 
T 6 HOH B 10 410 273 HOH HOH . 
T 6 HOH B 11 411 287 HOH HOH . 
T 6 HOH B 12 412 276 HOH HOH . 
T 6 HOH B 13 413 280 HOH HOH . 
T 6 HOH B 14 414 281 HOH HOH . 
T 6 HOH B 15 415 271 HOH HOH . 
T 6 HOH B 16 416 282 HOH HOH . 
T 6 HOH B 17 417 283 HOH HOH . 
T 6 HOH B 18 418 274 HOH HOH . 
T 6 HOH B 19 419 288 HOH HOH . 
U 6 HOH C 1 401 269 HOH HOH . 
U 6 HOH C 2 402 271 HOH HOH . 
U 6 HOH C 3 403 282 HOH HOH . 
U 6 HOH C 4 404 270 HOH HOH . 
U 6 HOH C 5 405 284 HOH HOH . 
U 6 HOH C 6 406 279 HOH HOH . 
U 6 HOH C 7 407 290 HOH HOH . 
U 6 HOH C 8 408 276 HOH HOH . 
U 6 HOH C 9 409 268 HOH HOH . 
U 6 HOH C 10 410 267 HOH HOH . 
U 6 HOH C 11 411 278 HOH HOH . 
U 6 HOH C 12 412 286 HOH HOH . 
U 6 HOH C 13 413 280 HOH HOH . 
U 6 HOH C 14 414 285 HOH HOH . 
U 6 HOH C 15 415 274 HOH HOH . 
U 6 HOH C 16 416 277 HOH HOH . 
U 6 HOH C 17 417 291 HOH HOH . 
U 6 HOH C 18 418 281 HOH HOH . 
U 6 HOH C 19 419 272 HOH HOH . 
U 6 HOH C 20 420 283 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N2 GTA . . . M 3 45.544 157.677 -12.413 1 32.65 ? N2 GTA 303 B 1 
HETATM 2 O O6 GTA . . . M 3 41.441 155.225 -12 1 29.96 ? O6 GTA 303 B 1 
HETATM 3 C C6 GTA . . . M 3 42.132 156.076 -11.59 1 23.94 ? C6 GTA 303 B 1 
HETATM 4 C C5 GTA . . . M 3 41.704 156.901 -10.361 1 26.6 ? C5 GTA 303 B 1 
HETATM 5 N N7 GTA . . . M 3 40.616 156.855 -9.583 1 24.65 1 N7 GTA 303 B 1 
HETATM 6 C C7 GTA . . . M 3 39.411 155.987 -9.626 1 19.42 ? C7 GTA 303 B 1 
HETATM 7 C C8 GTA . . . M 3 40.741 157.803 -8.64 1 27.07 ? C8 GTA 303 B 1 
HETATM 8 N N9 GTA . . . M 3 41.914 158.436 -8.831 1 35.11 ? N9 GTA 303 B 1 
HETATM 9 C C4 GTA . . . M 3 42.509 157.884 -9.89 1 31.49 ? C4 GTA 303 B 1 
HETATM 10 N N3 GTA . . . M 3 43.828 158.172 -10.571 1 31 ? N3 GTA 303 B 1 
HETATM 11 C C2 GTA . . . M 3 44.238 157.391 -11.74 1 26.68 ? C2 GTA 303 B 1 
HETATM 12 N N1 GTA . . . M 3 43.391 156.35 -12.241 1 18.84 ? N1 GTA 303 B 1 
HETATM 13 O O3A GTA . . . M 3 41.277 162.461 -7.082 1 38.31 ? O3A GTA 303 B 1 
HETATM 14 C C1A GTA . . . M 3 42.498 159.479 -8.121 1 37.1 ? C1A GTA 303 B 1 
HETATM 15 C C2A GTA . . . M 3 41.938 160.653 -8.45 1 35.63 ? C2A GTA 303 B 1 
HETATM 16 C C3A GTA . . . M 3 41.254 161.144 -7.156 1 37.81 ? C3A GTA 303 B 1 
HETATM 17 C C4A GTA . . . M 3 42.19 160.496 -6.045 1 42.99 ? C4A GTA 303 B 1 
HETATM 18 C C5A GTA . . . M 3 41.531 160.621 -4.651 1 49.17 ? C5A GTA 303 B 1 
HETATM 19 O O4A GTA . . . M 3 42.292 159.275 -6.482 1 39.98 ? O4A GTA 303 B 1 
HETATM 20 O O2A GTA . . . M 3 42.986 161.61 -8.837 1 31.66 ? O2A GTA 303 B 1 
HETATM 21 P P1 GTA . . . M 3 40.707 159.378 -2.483 1 56.69 ? P1 GTA 303 B 1 
HETATM 22 O O11 GTA . . . M 3 41.006 160.757 -1.896 1 54.9 -1 O11 GTA 303 B 1 
HETATM 23 O O12 GTA . . . M 3 41.528 158.343 -1.767 1 57.64 -1 O12 GTA 303 B 1 
HETATM 24 O O13 GTA . . . M 3 39.103 159.051 -2.264 1 56.77 ? O13 GTA 303 B 1 
HETATM 25 O O15 GTA . . . M 3 41.106 159.38 -4.125 1 50.92 ? O15 GTA 303 B 1 
HETATM 26 P P2 GTA . . . M 3 38.191 158.182 -3.325 1 53.71 ? P2 GTA 303 B 1 
HETATM 27 O O22 GTA . . . M 3 37.516 159.138 -4.325 1 59.55 -1 O22 GTA 303 B 1 
HETATM 28 O O21 GTA . . . M 3 37.127 157.409 -2.557 1 57.92 -1 O21 GTA 303 B 1 
HETATM 29 O O23 GTA . . . M 3 39.169 157.123 -4.151 1 42.94 ? O23 GTA 303 B 1 
HETATM 30 P P3 GTA . . . M 3 38.634 156.244 -5.421 1 48.54 ? P3 GTA 303 B 1 
HETATM 31 O O32 GTA . . . M 3 39.538 155.07 -5.626 1 38.07 -1 O32 GTA 303 B 1 
HETATM 32 O O31 GTA . . . M 3 37.224 155.751 -5.153 1 54.76 -1 O31 GTA 303 B 1 
HETATM 33 O O33 GTA . . . M 3 38.636 157.213 -6.78 1 55.96 ? O33 GTA 303 B 1 
HETATM 34 C C5B GTA . . . M 3 37.499 157.983 -7.113 1 60.48 ? C5B GTA 303 B 1 
HETATM 35 C C4B GTA . . . M 3 37.905 159.517 -7.133 1 66.03 ? C4B GTA 303 B 1 
HETATM 36 O O4B GTA . . . M 3 38.228 159.922 -8.327 1 67.24 ? O4B GTA 303 B 1 
HETATM 37 C C3B GTA . . . M 3 36.705 160.397 -6.804 1 69.19 ? C3B GTA 303 B 1 
HETATM 38 O O3B GTA . . . M 3 36.509 160.461 -5.454 1 66.38 ? O3B GTA 303 B 1 
HETATM 39 C C2B GTA . . . M 3 37.149 161.777 -7.355 1 68.83 ? C2B GTA 303 B 1 
HETATM 40 O O2B GTA . . . M 3 37.844 162.533 -6.261 1 67.15 ? O2B GTA 303 B 1 
HETATM 41 C C1B GTA . . . M 3 38.006 161.534 -8.287 1 69.13 ? C1B GTA 303 B 1 
HETATM 42 N N9C GTA . . . M 3 37.503 162.051 -9.552 1 73.83 ? N9C GTA 303 B 1 
HETATM 43 C C8C GTA . . . M 3 36.829 163.213 -9.695 1 73.43 ? C8C GTA 303 B 1 
HETATM 44 N N7C GTA . . . M 3 36.529 163.36 -10.989 1 74.18 ? N7C GTA 303 B 1 
HETATM 45 C C5C GTA . . . M 3 37.017 162.289 -11.654 1 75.22 ? C5C GTA 303 B 1 
HETATM 46 C C6C GTA . . . M 3 36.989 161.938 -12.99 1 73.56 ? C6C GTA 303 B 1 
HETATM 47 N N6C GTA . . . M 3 36.45 162.547 -14.164 1 70.04 ? N6C GTA 303 B 1 
HETATM 48 N N1C GTA . . . M 3 37.557 160.806 -13.391 1 75.96 ? N1C GTA 303 B 1 
HETATM 49 C C2C GTA . . . M 3 38.167 159.988 -12.49 1 74.63 ? C2C GTA 303 B 1 
HETATM 50 N N3C GTA . . . M 3 38.196 160.331 -11.174 1 73.31 ? N3C GTA 303 B 1 
HETATM 51 C C4C GTA . . . M 3 37.62 161.482 -10.763 1 75.41 ? C4C GTA 303 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           51 
#