data_5GP1
#
_model_server_result.job_id            -rSkRjHAShQa5vcLIN-Pkg 
_model_server_result.datetime_utc      '2024-11-08 03:17:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gp1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":303}' 
#
_entry.id    5GP1 
#
_exptl.entry_id    5GP1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              787.441 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5GP1 
_cell.length_a            123.77 
_cell.length_b            123.77 
_cell.length_c            119.36 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GP1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,S 1 1 
B,K,L,M,N,T 2 1 
C,O,P,Q,R,U 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 M N N 
? 3 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 30 A LYS 29 1_555 D O3 SO4 . A SO4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 ? 
covale ? covale2 A NE ARG 42 A ARG 41 1_555 E O3 SO4 . A SO4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? 
#
_chem_comp.formula           'C21 H30 N10 O17 P3 1' 
_chem_comp.formula_weight    787.441 
_chem_comp.id                GTA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     7-METHYL-GPPPA 
#
_atom_sites.entry_id                     5GP1 
_atom_sites.fract_transf_matrix[1][1]    0.00808 
_atom_sites.fract_transf_matrix[1][2]    0.004665 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009329 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008378 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 SO4 A 1 301 267 SO4 SO4 . 
E 2 SO4 A 1 302 268 SO4 SO4 . 
F 2 SO4 A 1 303 269 SO4 SO4 . 
G 2 SO4 A 1 304 270 SO4 SO4 . 
H 2 SO4 A 1 305 297 SO4 SO4 . 
I 3 GTA A 1 306 266 GTA GTA . 
J 4 SAH A 1 307 298 SAH SAH . 
K 2 SO4 B 1 301 267 SO4 SO4 . 
L 2 SO4 B 1 302 285 SO4 SO4 . 
M 3 GTA B 1 303 266 GTA GTA . 
N 4 SAH B 1 304 286 SAH SAH . 
O 2 SO4 C 1 301 266 SO4 SO4 . 
P 5 NI C 1 302 288 NI NI . 
Q 3 GTA C 1 303 265 GTA GTA . 
R 4 SAH C 1 304 289 SAH SAH . 
S 6 HOH A 1 401 286 HOH HOH . 
S 6 HOH A 2 402 287 HOH HOH . 
S 6 HOH A 3 403 282 HOH HOH . 
S 6 HOH A 4 404 281 HOH HOH . 
S 6 HOH A 5 405 302 HOH HOH . 
S 6 HOH A 6 406 283 HOH HOH . 
S 6 HOH A 7 407 272 HOH HOH . 
S 6 HOH A 8 408 292 HOH HOH . 
S 6 HOH A 9 409 277 HOH HOH . 
S 6 HOH A 10 410 278 HOH HOH . 
S 6 HOH A 11 411 274 HOH HOH . 
S 6 HOH A 12 412 285 HOH HOH . 
S 6 HOH A 13 413 299 HOH HOH . 
S 6 HOH A 14 414 279 HOH HOH . 
S 6 HOH A 15 415 291 HOH HOH . 
S 6 HOH A 16 416 294 HOH HOH . 
S 6 HOH A 17 417 289 HOH HOH . 
S 6 HOH A 18 418 295 HOH HOH . 
S 6 HOH A 19 419 290 HOH HOH . 
S 6 HOH A 20 420 284 HOH HOH . 
S 6 HOH A 21 421 288 HOH HOH . 
S 6 HOH A 22 422 276 HOH HOH . 
S 6 HOH A 23 423 293 HOH HOH . 
S 6 HOH A 24 424 296 HOH HOH . 
S 6 HOH A 25 425 280 HOH HOH . 
S 6 HOH A 26 426 300 HOH HOH . 
S 6 HOH A 27 427 273 HOH HOH . 
S 6 HOH A 28 428 271 HOH HOH . 
S 6 HOH A 29 429 303 HOH HOH . 
S 6 HOH A 30 430 301 HOH HOH . 
S 6 HOH A 31 431 275 HOH HOH . 
T 6 HOH B 1 401 275 HOH HOH . 
T 6 HOH B 2 402 278 HOH HOH . 
T 6 HOH B 3 403 270 HOH HOH . 
T 6 HOH B 4 404 287 HOH HOH . 
T 6 HOH B 5 405 284 HOH HOH . 
T 6 HOH B 6 406 277 HOH HOH . 
T 6 HOH B 7 407 272 HOH HOH . 
T 6 HOH B 8 408 279 HOH HOH . 
T 6 HOH B 9 409 268 HOH HOH . 
T 6 HOH B 10 410 273 HOH HOH . 
T 6 HOH B 11 411 287 HOH HOH . 
T 6 HOH B 12 412 276 HOH HOH . 
T 6 HOH B 13 413 280 HOH HOH . 
T 6 HOH B 14 414 281 HOH HOH . 
T 6 HOH B 15 415 271 HOH HOH . 
T 6 HOH B 16 416 282 HOH HOH . 
T 6 HOH B 17 417 283 HOH HOH . 
T 6 HOH B 18 418 274 HOH HOH . 
T 6 HOH B 19 419 288 HOH HOH . 
U 6 HOH C 1 401 269 HOH HOH . 
U 6 HOH C 2 402 271 HOH HOH . 
U 6 HOH C 3 403 282 HOH HOH . 
U 6 HOH C 4 404 270 HOH HOH . 
U 6 HOH C 5 405 284 HOH HOH . 
U 6 HOH C 6 406 279 HOH HOH . 
U 6 HOH C 7 407 290 HOH HOH . 
U 6 HOH C 8 408 276 HOH HOH . 
U 6 HOH C 9 409 268 HOH HOH . 
U 6 HOH C 10 410 267 HOH HOH . 
U 6 HOH C 11 411 278 HOH HOH . 
U 6 HOH C 12 412 286 HOH HOH . 
U 6 HOH C 13 413 280 HOH HOH . 
U 6 HOH C 14 414 285 HOH HOH . 
U 6 HOH C 15 415 274 HOH HOH . 
U 6 HOH C 16 416 277 HOH HOH . 
U 6 HOH C 17 417 291 HOH HOH . 
U 6 HOH C 18 418 281 HOH HOH . 
U 6 HOH C 19 419 272 HOH HOH . 
U 6 HOH C 20 420 283 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N2 GTA . . . Q 3 72.07 154.375 7.489 1 42.07 ? N2 GTA 303 C 1 
HETATM 2 O O6 GTA . . . Q 3 72.232 149.637 8.183 1 32.57 ? O6 GTA 303 C 1 
HETATM 3 C C6 GTA . . . Q 3 71.785 150.669 8.508 1 31.16 ? C6 GTA 303 C 1 
HETATM 4 C C5 GTA . . . Q 3 70.77 150.751 9.667 1 28.73 ? C5 GTA 303 C 1 
HETATM 5 N N7 GTA . . . Q 3 70.238 149.814 10.461 1 25.87 1 N7 GTA 303 C 1 
HETATM 6 C C7 GTA . . . Q 3 70.432 148.342 10.509 1 23.22 ? C7 GTA 303 C 1 
HETATM 7 C C8 GTA . . . Q 3 69.401 150.42 11.319 1 29.63 ? C8 GTA 303 C 1 
HETATM 8 N N9 GTA . . . Q 3 69.411 151.745 11.053 1 31.96 ? N9 GTA 303 C 1 
HETATM 9 C C4 GTA . . . Q 3 70.257 151.949 10.039 1 31.93 ? C4 GTA 303 C 1 
HETATM 10 N N3 GTA . . . Q 3 70.682 153.208 9.312 1 36.71 ? N3 GTA 303 C 1 
HETATM 11 C C2 GTA . . . Q 3 71.646 153.133 8.209 1 37.05 ? C2 GTA 303 C 1 
HETATM 12 N N1 GTA . . . Q 3 72.191 151.868 7.813 1 29.41 ? N1 GTA 303 C 1 
HETATM 13 O O3A GTA . . . Q 3 65.597 152.441 12.895 1 38.15 ? O3A GTA 303 C 1 
HETATM 14 C C1A GTA . . . Q 3 68.732 152.809 11.652 1 27.85 ? C1A GTA 303 C 1 
HETATM 15 C C2A GTA . . . Q 3 67.415 152.785 11.432 1 28.23 ? C2A GTA 303 C 1 
HETATM 16 C C3A GTA . . . Q 3 66.824 152.023 12.639 1 36.27 ? C3A GTA 303 C 1 
HETATM 17 C C4A GTA . . . Q 3 67.812 152.38 13.844 1 37.61 ? C4A GTA 303 C 1 
HETATM 18 C C5A GTA . . . Q 3 68.098 151.127 14.701 1 42.22 ? C5A GTA 303 C 1 
HETATM 19 O O4A GTA . . . Q 3 68.925 152.79 13.299 1 34.55 ? O4A GTA 303 C 1 
HETATM 20 O O2A GTA . . . Q 3 66.907 154.166 11.428 1 19.64 ? O2A GTA 303 C 1 
HETATM 21 P P1 GTA . . . Q 3 67.773 150.627 17.307 1 49.36 ? P1 GTA 303 C 1 
HETATM 22 O O11 GTA . . . Q 3 68.951 151.533 17.667 1 48.14 -1 O11 GTA 303 C 1 
HETATM 23 O O12 GTA . . . Q 3 66.681 150.784 18.326 1 44.29 -1 O12 GTA 303 C 1 
HETATM 24 O O13 GTA . . . Q 3 68.3 149.057 17.298 1 55.75 ? O13 GTA 303 C 1 
HETATM 25 O O15 GTA . . . Q 3 67.185 151.035 15.776 1 49.02 ? O15 GTA 303 C 1 
HETATM 26 P P2 GTA . . . Q 3 67.482 147.79 16.623 1 54.82 ? P2 GTA 303 C 1 
HETATM 27 O O22 GTA . . . Q 3 66.381 148.309 15.676 1 51.57 -1 O22 GTA 303 C 1 
HETATM 28 O O21 GTA . . . Q 3 66.848 146.949 17.723 1 56.65 -1 O21 GTA 303 C 1 
HETATM 29 O O23 GTA . . . Q 3 68.559 146.858 15.762 1 53.63 ? O23 GTA 303 C 1 
HETATM 30 P P3 GTA . . . Q 3 69.575 147.472 14.634 1 48.39 ? P3 GTA 303 C 1 
HETATM 31 O O32 GTA . . . Q 3 70.842 146.676 14.614 1 41.3 -1 O32 GTA 303 C 1 
HETATM 32 O O31 GTA . . . Q 3 69.897 148.914 14.975 1 43.89 -1 O31 GTA 303 C 1 
HETATM 33 O O33 GTA . . . Q 3 68.834 147.394 13.139 1 53.98 ? O33 GTA 303 C 1 
HETATM 34 C C5B GTA . . . Q 3 67.441 147.161 13.07 1 60.63 ? C5B GTA 303 C 1 
HETATM 35 C C4B GTA . . . Q 3 66.748 148.378 12.321 1 63.72 ? C4B GTA 303 C 1 
HETATM 36 O O4B GTA . . . Q 3 66.936 148.286 11.038 1 66.01 ? O4B GTA 303 C 1 
HETATM 37 C C3B GTA . . . Q 3 65.227 148.337 12.492 1 61.39 ? C3B GTA 303 C 1 
HETATM 38 O O3B GTA . . . Q 3 64.832 149.277 13.401 1 58.8 ? O3B GTA 303 C 1 
HETATM 39 C C2B GTA . . . Q 3 64.65 148.683 11.09 1 63.33 ? C2B GTA 303 C 1 
HETATM 40 O O2B GTA . . . Q 3 63.66 149.814 11.21 1 61.12 ? O2B GTA 303 C 1 
HETATM 41 C C1B GTA . . . Q 3 65.666 149.064 10.399 1 69.23 ? C1B GTA 303 C 1 
HETATM 42 N N9C GTA . . . Q 3 65.518 148.719 8.99 1 76.87 ? N9C GTA 303 C 1 
HETATM 43 C C8C GTA . . . Q 3 64.516 147.991 8.449 1 76.47 ? C8C GTA 303 C 1 
HETATM 44 N N7C GTA . . . Q 3 64.74 147.899 7.134 1 76.37 ? N7C GTA 303 C 1 
HETATM 45 C C5C GTA . . . Q 3 65.88 148.569 6.854 1 78.12 ? C5C GTA 303 C 1 
HETATM 46 C C6C GTA . . . Q 3 66.566 148.793 5.674 1 78.55 ? C6C GTA 303 C 1 
HETATM 47 N N6C GTA . . . Q 3 66.352 148.417 4.313 1 75.96 ? N6C GTA 303 C 1 
HETATM 48 N N1C GTA . . . Q 3 67.689 149.504 5.682 1 77.24 ? N1C GTA 303 C 1 
HETATM 49 C C2C GTA . . . Q 3 68.169 150.014 6.847 1 72.93 ? C2C GTA 303 C 1 
HETATM 50 N N3C GTA . . . Q 3 67.498 149.796 8.009 1 72.08 ? N3C GTA 303 C 1 
HETATM 51 C C4C GTA . . . Q 3 66.356 149.074 8.004 1 76.31 ? C4C GTA 303 C 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           51 
#