data_5GP1 # _model_server_result.job_id VCOmmwy3pvRh2FSoiwtUtA _model_server_result.datetime_utc '2024-11-08 03:06:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gp1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":306}' # _entry.id 5GP1 # _exptl.entry_id 5GP1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 787.441 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5GP1 _cell.length_a 123.77 _cell.length_b 123.77 _cell.length_c 119.36 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,S 1 1 B,K,L,M,N,T 2 1 C,O,P,Q,R,U 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 M N N ? 3 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 30 A LYS 29 1_555 D O3 SO4 . A SO4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 ? covale ? covale2 A NE ARG 42 A ARG 41 1_555 E O3 SO4 . A SO4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? # _chem_comp.formula 'C21 H30 N10 O17 P3 1' _chem_comp.formula_weight 787.441 _chem_comp.id GTA _chem_comp.mon_nstd_flag . _chem_comp.name "P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7-METHYL-GPPPA # _atom_sites.entry_id 5GP1 _atom_sites.fract_transf_matrix[1][1] 0.00808 _atom_sites.fract_transf_matrix[1][2] 0.004665 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009329 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008378 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 301 267 SO4 SO4 . E 2 SO4 A 1 302 268 SO4 SO4 . F 2 SO4 A 1 303 269 SO4 SO4 . G 2 SO4 A 1 304 270 SO4 SO4 . H 2 SO4 A 1 305 297 SO4 SO4 . I 3 GTA A 1 306 266 GTA GTA . J 4 SAH A 1 307 298 SAH SAH . K 2 SO4 B 1 301 267 SO4 SO4 . L 2 SO4 B 1 302 285 SO4 SO4 . M 3 GTA B 1 303 266 GTA GTA . N 4 SAH B 1 304 286 SAH SAH . O 2 SO4 C 1 301 266 SO4 SO4 . P 5 NI C 1 302 288 NI NI . Q 3 GTA C 1 303 265 GTA GTA . R 4 SAH C 1 304 289 SAH SAH . S 6 HOH A 1 401 286 HOH HOH . S 6 HOH A 2 402 287 HOH HOH . S 6 HOH A 3 403 282 HOH HOH . S 6 HOH A 4 404 281 HOH HOH . S 6 HOH A 5 405 302 HOH HOH . S 6 HOH A 6 406 283 HOH HOH . S 6 HOH A 7 407 272 HOH HOH . S 6 HOH A 8 408 292 HOH HOH . S 6 HOH A 9 409 277 HOH HOH . S 6 HOH A 10 410 278 HOH HOH . S 6 HOH A 11 411 274 HOH HOH . S 6 HOH A 12 412 285 HOH HOH . S 6 HOH A 13 413 299 HOH HOH . S 6 HOH A 14 414 279 HOH HOH . S 6 HOH A 15 415 291 HOH HOH . S 6 HOH A 16 416 294 HOH HOH . S 6 HOH A 17 417 289 HOH HOH . S 6 HOH A 18 418 295 HOH HOH . S 6 HOH A 19 419 290 HOH HOH . S 6 HOH A 20 420 284 HOH HOH . S 6 HOH A 21 421 288 HOH HOH . S 6 HOH A 22 422 276 HOH HOH . S 6 HOH A 23 423 293 HOH HOH . S 6 HOH A 24 424 296 HOH HOH . S 6 HOH A 25 425 280 HOH HOH . S 6 HOH A 26 426 300 HOH HOH . S 6 HOH A 27 427 273 HOH HOH . S 6 HOH A 28 428 271 HOH HOH . S 6 HOH A 29 429 303 HOH HOH . S 6 HOH A 30 430 301 HOH HOH . S 6 HOH A 31 431 275 HOH HOH . T 6 HOH B 1 401 275 HOH HOH . T 6 HOH B 2 402 278 HOH HOH . T 6 HOH B 3 403 270 HOH HOH . T 6 HOH B 4 404 287 HOH HOH . T 6 HOH B 5 405 284 HOH HOH . T 6 HOH B 6 406 277 HOH HOH . T 6 HOH B 7 407 272 HOH HOH . T 6 HOH B 8 408 279 HOH HOH . T 6 HOH B 9 409 268 HOH HOH . T 6 HOH B 10 410 273 HOH HOH . T 6 HOH B 11 411 287 HOH HOH . T 6 HOH B 12 412 276 HOH HOH . T 6 HOH B 13 413 280 HOH HOH . T 6 HOH B 14 414 281 HOH HOH . T 6 HOH B 15 415 271 HOH HOH . T 6 HOH B 16 416 282 HOH HOH . T 6 HOH B 17 417 283 HOH HOH . T 6 HOH B 18 418 274 HOH HOH . T 6 HOH B 19 419 288 HOH HOH . U 6 HOH C 1 401 269 HOH HOH . U 6 HOH C 2 402 271 HOH HOH . U 6 HOH C 3 403 282 HOH HOH . U 6 HOH C 4 404 270 HOH HOH . U 6 HOH C 5 405 284 HOH HOH . U 6 HOH C 6 406 279 HOH HOH . U 6 HOH C 7 407 290 HOH HOH . U 6 HOH C 8 408 276 HOH HOH . U 6 HOH C 9 409 268 HOH HOH . U 6 HOH C 10 410 267 HOH HOH . U 6 HOH C 11 411 278 HOH HOH . U 6 HOH C 12 412 286 HOH HOH . U 6 HOH C 13 413 280 HOH HOH . U 6 HOH C 14 414 285 HOH HOH . U 6 HOH C 15 415 274 HOH HOH . U 6 HOH C 16 416 277 HOH HOH . U 6 HOH C 17 417 291 HOH HOH . U 6 HOH C 18 418 281 HOH HOH . U 6 HOH C 19 419 272 HOH HOH . U 6 HOH C 20 420 283 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 GTA . . . I 3 45.369 128.92 11.751 1 38.66 ? N2 GTA 306 A 1 HETATM 2 O O6 GTA . . . I 3 41.075 130.915 10.898 1 31.64 ? O6 GTA 306 A 1 HETATM 3 C C6 GTA . . . I 3 41.882 130.126 10.584 1 31.27 ? C6 GTA 306 A 1 HETATM 4 C C5 GTA . . . I 3 41.65 129.209 9.363 1 25.88 ? C5 GTA 306 A 1 HETATM 5 N N7 GTA . . . I 3 40.642 129.09 8.489 1 25.82 1 N7 GTA 306 A 1 HETATM 6 C C7 GTA . . . I 3 39.352 129.82 8.382 1 32.79 ? C7 GTA 306 A 1 HETATM 7 C C8 GTA . . . I 3 40.958 128.12 7.609 1 25.32 ? C8 GTA 306 A 1 HETATM 8 N N9 GTA . . . I 3 42.173 127.639 7.95 1 31.54 ? N9 GTA 306 A 1 HETATM 9 C C4 GTA . . . I 3 42.595 128.306 9.018 1 29.34 ? C4 GTA 306 A 1 HETATM 10 N N3 GTA . . . I 3 43.873 128.185 9.814 1 32.37 ? N3 GTA 306 A 1 HETATM 11 C C2 GTA . . . I 3 44.099 129.048 10.97 1 31.55 ? C2 GTA 306 A 1 HETATM 12 N N1 GTA . . . I 3 43.106 130.012 11.347 1 31.67 ? N1 GTA 306 A 1 HETATM 13 O O3A GTA . . . I 3 42.082 123.61 6.265 1 38.98 ? O3A GTA 306 A 1 HETATM 14 C C1A GTA . . . I 3 42.984 126.651 7.398 1 37.04 ? C1A GTA 306 A 1 HETATM 15 C C2A GTA . . . I 3 42.534 125.421 7.667 1 37.29 ? C2A GTA 306 A 1 HETATM 16 C C3A GTA . . . I 3 41.896 124.913 6.362 1 39.24 ? C3A GTA 306 A 1 HETATM 17 C C4A GTA . . . I 3 42.706 125.682 5.223 1 45.47 ? C4A GTA 306 A 1 HETATM 18 C C5A GTA . . . I 3 41.772 126.022 4.053 1 41.48 ? C5A GTA 306 A 1 HETATM 19 O O4A GTA . . . I 3 43.071 126.813 5.752 1 45.39 ? O4A GTA 306 A 1 HETATM 20 O O2A GTA . . . I 3 43.674 124.554 7.998 1 31.26 ? O2A GTA 306 A 1 HETATM 21 P P1 GTA . . . I 3 40.11 127.955 3.308 1 48.42 ? P1 GTA 306 A 1 HETATM 22 O O11 GTA . . . I 3 39.965 129.446 3.604 1 47.11 -1 O11 GTA 306 A 1 HETATM 23 O O12 GTA . . . I 3 40.609 127.763 1.905 1 58.53 -1 O12 GTA 306 A 1 HETATM 24 O O13 GTA . . . I 3 38.657 127.197 3.487 1 46.15 ? O13 GTA 306 A 1 HETATM 25 O O15 GTA . . . I 3 41.206 127.27 4.383 1 42.27 ? O15 GTA 306 A 1 HETATM 26 P P2 GTA . . . I 3 37.266 127.813 2.861 1 64.65 ? P2 GTA 306 A 1 HETATM 27 O O22 GTA . . . I 3 36.055 127.014 3.386 1 66.82 -1 O22 GTA 306 A 1 HETATM 28 O O21 GTA . . . I 3 37.326 127.721 1.343 1 66.2 -1 O21 GTA 306 A 1 HETATM 29 O O23 GTA . . . I 3 37.138 129.41 3.319 1 69.59 ? O23 GTA 306 A 1 HETATM 30 P P3 GTA . . . I 3 37.346 129.961 4.851 1 64.95 ? P3 GTA 306 A 1 HETATM 31 O O32 GTA . . . I 3 38.578 130.81 4.913 1 57.24 -1 O32 GTA 306 A 1 HETATM 32 O O31 GTA . . . I 3 36.143 130.801 5.241 1 69.11 -1 O31 GTA 306 A 1 HETATM 33 O O33 GTA . . . I 3 37.506 128.674 5.908 1 52.57 ? O33 GTA 306 A 1 HETATM 34 C C5B GTA . . . I 3 36.347 128.017 6.383 1 40.62 ? C5B GTA 306 A 1 HETATM 35 C C4B GTA . . . I 3 36.743 126.565 6.887 1 35.37 ? C4B GTA 306 A 1 HETATM 36 O O4B GTA . . . I 3 37.917 126.605 7.445 1 31.56 ? O4B GTA 306 A 1 HETATM 37 C C3B GTA . . . I 3 35.786 126.105 7.984 1 42.12 ? C3B GTA 306 A 1 HETATM 38 O O3B GTA . . . I 3 34.803 125.314 7.458 1 46.11 ? O3B GTA 306 A 1 HETATM 39 C C2B GTA . . . I 3 36.667 125.283 8.964 1 38.71 ? C2B GTA 306 A 1 HETATM 40 O O2B GTA . . . I 3 36.508 123.809 8.676 1 39.43 ? O2B GTA 306 A 1 HETATM 41 C C1B GTA . . . I 3 37.888 125.648 8.758 1 34.12 ? C1B GTA 306 A 1 HETATM 42 N N9C GTA . . . I 3 38.411 126.388 9.902 1 32.76 ? N9C GTA 306 A 1 HETATM 43 C C8C GTA . . . I 3 37.792 127.422 10.511 1 29.83 ? C8C GTA 306 A 1 HETATM 44 N N7C GTA . . . I 3 38.575 127.845 11.509 1 29.5 ? N7C GTA 306 A 1 HETATM 45 C C5C GTA . . . I 3 39.685 127.078 11.523 1 26.35 ? C5C GTA 306 A 1 HETATM 46 C C6C GTA . . . I 3 40.803 127.083 12.334 1 25.17 ? C6C GTA 306 A 1 HETATM 47 N N6C GTA . . . I 3 41.216 127.878 13.448 1 24.09 ? N6C GTA 306 A 1 HETATM 48 N N1C GTA . . . I 3 41.776 126.2 12.135 1 21.92 ? N1C GTA 306 A 1 HETATM 49 C C2C GTA . . . I 3 41.674 125.29 11.13 1 18.03 ? C2C GTA 306 A 1 HETATM 50 N N3C GTA . . . I 3 40.574 125.284 10.33 1 24.23 ? N3C GTA 306 A 1 HETATM 51 C C4C GTA . . . I 3 39.583 126.179 10.529 1 27.95 ? C4C GTA 306 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 51 #