data_5GP7
#
_model_server_result.job_id            upPWHxd9D0CkdZAin_BxHQ 
_model_server_result.datetime_utc      '2024-11-04 20:09:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gp7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1002}' 
#
_entry.id    5GP7 
#
_exptl.entry_id    5GP7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.68 
_cell.angle_gamma         90 
_cell.entry_id            5GP7 
_cell.length_a            35.506 
_cell.length_b            59.242 
_cell.length_c            39.995 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GP7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5GP7 
_atom_sites.fract_transf_matrix[1][1]    0.028164 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005309 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01688 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025444 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 1001 2 GOL GOL . 
D 3 GOL A 1 1002 3 GOL GOL . 
E 4 HOH A 1 1101 161 HOH HOH . 
E 4 HOH A 2 1102 217 HOH HOH . 
E 4 HOH A 3 1103 211 HOH HOH . 
E 4 HOH A 4 1104 86 HOH HOH . 
E 4 HOH A 5 1105 124 HOH HOH . 
E 4 HOH A 6 1106 207 HOH HOH . 
E 4 HOH A 7 1107 188 HOH HOH . 
E 4 HOH A 8 1108 238 HOH HOH . 
E 4 HOH A 9 1109 183 HOH HOH . 
E 4 HOH A 10 1110 111 HOH HOH . 
E 4 HOH A 11 1111 139 HOH HOH . 
E 4 HOH A 12 1112 88 HOH HOH . 
E 4 HOH A 13 1113 35 HOH HOH . 
E 4 HOH A 14 1114 187 HOH HOH . 
E 4 HOH A 15 1115 212 HOH HOH . 
E 4 HOH A 16 1116 64 HOH HOH . 
E 4 HOH A 17 1117 135 HOH HOH . 
E 4 HOH A 18 1118 160 HOH HOH . 
E 4 HOH A 19 1119 159 HOH HOH . 
E 4 HOH A 20 1120 24 HOH HOH . 
E 4 HOH A 21 1121 72 HOH HOH . 
E 4 HOH A 22 1122 221 HOH HOH . 
E 4 HOH A 23 1123 28 HOH HOH . 
E 4 HOH A 24 1124 176 HOH HOH . 
E 4 HOH A 25 1125 4 HOH HOH . 
E 4 HOH A 26 1126 97 HOH HOH . 
E 4 HOH A 27 1127 105 HOH HOH . 
E 4 HOH A 28 1128 224 HOH HOH . 
E 4 HOH A 29 1129 192 HOH HOH . 
E 4 HOH A 30 1130 51 HOH HOH . 
E 4 HOH A 31 1131 12 HOH HOH . 
E 4 HOH A 32 1132 177 HOH HOH . 
E 4 HOH A 33 1133 145 HOH HOH . 
E 4 HOH A 34 1134 215 HOH HOH . 
E 4 HOH A 35 1135 94 HOH HOH . 
E 4 HOH A 36 1136 118 HOH HOH . 
E 4 HOH A 37 1137 167 HOH HOH . 
E 4 HOH A 38 1138 138 HOH HOH . 
E 4 HOH A 39 1139 156 HOH HOH . 
E 4 HOH A 40 1140 98 HOH HOH . 
E 4 HOH A 41 1141 106 HOH HOH . 
E 4 HOH A 42 1142 136 HOH HOH . 
E 4 HOH A 43 1143 84 HOH HOH . 
E 4 HOH A 44 1144 56 HOH HOH . 
E 4 HOH A 45 1145 195 HOH HOH . 
E 4 HOH A 46 1146 117 HOH HOH . 
E 4 HOH A 47 1147 68 HOH HOH . 
E 4 HOH A 48 1148 83 HOH HOH . 
E 4 HOH A 49 1149 113 HOH HOH . 
E 4 HOH A 50 1150 53 HOH HOH . 
E 4 HOH A 51 1151 58 HOH HOH . 
E 4 HOH A 52 1152 85 HOH HOH . 
E 4 HOH A 53 1153 67 HOH HOH . 
E 4 HOH A 54 1154 158 HOH HOH . 
E 4 HOH A 55 1155 191 HOH HOH . 
E 4 HOH A 56 1156 2 HOH HOH . 
E 4 HOH A 57 1157 52 HOH HOH . 
E 4 HOH A 58 1158 9 HOH HOH . 
E 4 HOH A 59 1159 47 HOH HOH . 
E 4 HOH A 60 1160 8 HOH HOH . 
E 4 HOH A 61 1161 204 HOH HOH . 
E 4 HOH A 62 1162 197 HOH HOH . 
E 4 HOH A 63 1163 38 HOH HOH . 
E 4 HOH A 64 1164 59 HOH HOH . 
E 4 HOH A 65 1165 6 HOH HOH . 
E 4 HOH A 66 1166 34 HOH HOH . 
E 4 HOH A 67 1167 7 HOH HOH . 
E 4 HOH A 68 1168 32 HOH HOH . 
E 4 HOH A 69 1169 16 HOH HOH . 
E 4 HOH A 70 1170 100 HOH HOH . 
E 4 HOH A 71 1171 152 HOH HOH . 
E 4 HOH A 72 1172 63 HOH HOH . 
E 4 HOH A 73 1173 60 HOH HOH . 
E 4 HOH A 74 1174 66 HOH HOH . 
E 4 HOH A 75 1175 17 HOH HOH . 
E 4 HOH A 76 1176 10 HOH HOH . 
E 4 HOH A 77 1177 30 HOH HOH . 
E 4 HOH A 78 1178 172 HOH HOH . 
E 4 HOH A 79 1179 57 HOH HOH . 
E 4 HOH A 80 1180 45 HOH HOH . 
E 4 HOH A 81 1181 218 HOH HOH . 
E 4 HOH A 82 1182 227 HOH HOH . 
E 4 HOH A 83 1183 1 HOH HOH . 
E 4 HOH A 84 1184 163 HOH HOH . 
E 4 HOH A 85 1185 42 HOH HOH . 
E 4 HOH A 86 1186 170 HOH HOH . 
E 4 HOH A 87 1187 114 HOH HOH . 
E 4 HOH A 88 1188 44 HOH HOH . 
E 4 HOH A 89 1189 194 HOH HOH . 
E 4 HOH A 90 1190 239 HOH HOH . 
E 4 HOH A 91 1191 122 HOH HOH . 
E 4 HOH A 92 1192 14 HOH HOH . 
E 4 HOH A 93 1193 3 HOH HOH . 
E 4 HOH A 94 1194 102 HOH HOH . 
E 4 HOH A 95 1195 147 HOH HOH . 
E 4 HOH A 96 1196 26 HOH HOH . 
E 4 HOH A 97 1197 40 HOH HOH . 
E 4 HOH A 98 1198 19 HOH HOH . 
E 4 HOH A 99 1199 230 HOH HOH . 
E 4 HOH A 100 1200 5 HOH HOH . 
E 4 HOH A 101 1201 125 HOH HOH . 
E 4 HOH A 102 1202 33 HOH HOH . 
E 4 HOH A 103 1203 23 HOH HOH . 
E 4 HOH A 104 1204 61 HOH HOH . 
E 4 HOH A 105 1205 41 HOH HOH . 
E 4 HOH A 106 1206 11 HOH HOH . 
E 4 HOH A 107 1207 185 HOH HOH . 
E 4 HOH A 108 1208 77 HOH HOH . 
E 4 HOH A 109 1209 205 HOH HOH . 
E 4 HOH A 110 1210 155 HOH HOH . 
E 4 HOH A 111 1211 220 HOH HOH . 
E 4 HOH A 112 1212 74 HOH HOH . 
E 4 HOH A 113 1213 37 HOH HOH . 
E 4 HOH A 114 1214 116 HOH HOH . 
E 4 HOH A 115 1215 132 HOH HOH . 
E 4 HOH A 116 1216 18 HOH HOH . 
E 4 HOH A 117 1217 21 HOH HOH . 
E 4 HOH A 118 1218 78 HOH HOH . 
E 4 HOH A 119 1219 48 HOH HOH . 
E 4 HOH A 120 1220 130 HOH HOH . 
E 4 HOH A 121 1221 104 HOH HOH . 
E 4 HOH A 122 1222 22 HOH HOH . 
E 4 HOH A 123 1223 75 HOH HOH . 
E 4 HOH A 124 1224 178 HOH HOH . 
E 4 HOH A 125 1225 50 HOH HOH . 
E 4 HOH A 126 1226 69 HOH HOH . 
E 4 HOH A 127 1227 149 HOH HOH . 
E 4 HOH A 128 1228 36 HOH HOH . 
E 4 HOH A 129 1229 190 HOH HOH . 
E 4 HOH A 130 1230 13 HOH HOH . 
E 4 HOH A 131 1231 110 HOH HOH . 
E 4 HOH A 132 1232 150 HOH HOH . 
E 4 HOH A 133 1233 29 HOH HOH . 
E 4 HOH A 134 1234 54 HOH HOH . 
E 4 HOH A 135 1235 73 HOH HOH . 
E 4 HOH A 136 1236 225 HOH HOH . 
E 4 HOH A 137 1237 134 HOH HOH . 
E 4 HOH A 138 1238 166 HOH HOH . 
E 4 HOH A 139 1239 93 HOH HOH . 
E 4 HOH A 140 1240 20 HOH HOH . 
E 4 HOH A 141 1241 222 HOH HOH . 
E 4 HOH A 142 1242 95 HOH HOH . 
E 4 HOH A 143 1243 65 HOH HOH . 
E 4 HOH A 144 1244 202 HOH HOH . 
E 4 HOH A 145 1245 175 HOH HOH . 
E 4 HOH A 146 1246 131 HOH HOH . 
E 4 HOH A 147 1247 55 HOH HOH . 
E 4 HOH A 148 1248 128 HOH HOH . 
E 4 HOH A 149 1249 182 HOH HOH . 
E 4 HOH A 150 1250 109 HOH HOH . 
E 4 HOH A 151 1251 201 HOH HOH . 
E 4 HOH A 152 1252 71 HOH HOH . 
E 4 HOH A 153 1253 123 HOH HOH . 
E 4 HOH A 154 1254 181 HOH HOH . 
E 4 HOH A 155 1255 146 HOH HOH . 
E 4 HOH A 156 1256 43 HOH HOH . 
E 4 HOH A 157 1257 119 HOH HOH . 
E 4 HOH A 158 1258 39 HOH HOH . 
E 4 HOH A 159 1259 76 HOH HOH . 
E 4 HOH A 160 1260 203 HOH HOH . 
E 4 HOH A 161 1261 242 HOH HOH . 
E 4 HOH A 162 1262 173 HOH HOH . 
E 4 HOH A 163 1263 243 HOH HOH . 
E 4 HOH A 164 1264 115 HOH HOH . 
E 4 HOH A 165 1265 245 HOH HOH . 
E 4 HOH A 166 1266 219 HOH HOH . 
E 4 HOH A 167 1267 228 HOH HOH . 
E 4 HOH A 168 1268 233 HOH HOH . 
E 4 HOH A 169 1269 179 HOH HOH . 
E 4 HOH A 170 1270 206 HOH HOH . 
E 4 HOH A 171 1271 25 HOH HOH . 
E 4 HOH A 172 1272 154 HOH HOH . 
E 4 HOH A 173 1273 198 HOH HOH . 
E 4 HOH A 174 1274 127 HOH HOH . 
E 4 HOH A 175 1275 151 HOH HOH . 
E 4 HOH A 176 1276 186 HOH HOH . 
E 4 HOH A 177 1277 89 HOH HOH . 
E 4 HOH A 178 1278 82 HOH HOH . 
E 4 HOH A 179 1279 91 HOH HOH . 
E 4 HOH A 180 1280 103 HOH HOH . 
E 4 HOH A 181 1281 70 HOH HOH . 
E 4 HOH A 182 1282 112 HOH HOH . 
E 4 HOH A 183 1283 196 HOH HOH . 
E 4 HOH A 184 1284 180 HOH HOH . 
E 4 HOH A 185 1285 31 HOH HOH . 
E 4 HOH A 186 1286 193 HOH HOH . 
E 4 HOH A 187 1287 126 HOH HOH . 
E 4 HOH A 188 1288 208 HOH HOH . 
E 4 HOH A 189 1289 62 HOH HOH . 
E 4 HOH A 190 1290 120 HOH HOH . 
E 4 HOH A 191 1291 92 HOH HOH . 
E 4 HOH A 192 1292 133 HOH HOH . 
E 4 HOH A 193 1293 143 HOH HOH . 
E 4 HOH A 194 1294 157 HOH HOH . 
E 4 HOH A 195 1295 235 HOH HOH . 
E 4 HOH A 196 1296 121 HOH HOH . 
E 4 HOH A 197 1297 226 HOH HOH . 
E 4 HOH A 198 1298 210 HOH HOH . 
E 4 HOH A 199 1299 108 HOH HOH . 
E 4 HOH A 200 1300 165 HOH HOH . 
E 4 HOH A 201 1301 162 HOH HOH . 
E 4 HOH A 202 1302 142 HOH HOH . 
E 4 HOH A 203 1303 216 HOH HOH . 
E 4 HOH A 204 1304 234 HOH HOH . 
E 4 HOH A 205 1305 129 HOH HOH . 
E 4 HOH A 206 1306 144 HOH HOH . 
E 4 HOH A 207 1307 107 HOH HOH . 
E 4 HOH A 208 1308 199 HOH HOH . 
E 4 HOH A 209 1309 171 HOH HOH . 
E 4 HOH A 210 1310 244 HOH HOH . 
E 4 HOH A 211 1311 148 HOH HOH . 
E 4 HOH A 212 1312 153 HOH HOH . 
E 4 HOH A 213 1313 168 HOH HOH . 
E 4 HOH A 214 1314 209 HOH HOH . 
E 4 HOH A 215 1315 169 HOH HOH . 
E 4 HOH A 216 1316 96 HOH HOH . 
E 4 HOH A 217 1317 184 HOH HOH . 
E 4 HOH A 218 1318 189 HOH HOH . 
E 4 HOH A 219 1319 81 HOH HOH . 
E 4 HOH A 220 1320 241 HOH HOH . 
E 4 HOH A 221 1321 213 HOH HOH . 
E 4 HOH A 222 1322 200 HOH HOH . 
E 4 HOH A 223 1323 214 HOH HOH . 
E 4 HOH A 224 1324 164 HOH HOH . 
F 4 HOH B 1 1101 15 HOH HOH . 
F 4 HOH B 2 1102 87 HOH HOH . 
F 4 HOH B 3 1103 236 HOH HOH . 
F 4 HOH B 4 1104 27 HOH HOH . 
F 4 HOH B 5 1105 141 HOH HOH . 
F 4 HOH B 6 1106 99 HOH HOH . 
F 4 HOH B 7 1107 46 HOH HOH . 
F 4 HOH B 8 1108 229 HOH HOH . 
F 4 HOH B 9 1109 101 HOH HOH . 
F 4 HOH B 10 1110 237 HOH HOH . 
F 4 HOH B 11 1111 49 HOH HOH . 
F 4 HOH B 12 1112 174 HOH HOH . 
F 4 HOH B 13 1113 223 HOH HOH . 
F 4 HOH B 14 1114 137 HOH HOH . 
F 4 HOH B 15 1115 240 HOH HOH . 
F 4 HOH B 16 1116 80 HOH HOH . 
F 4 HOH B 17 1117 231 HOH HOH . 
F 4 HOH B 18 1118 232 HOH HOH . 
F 4 HOH B 19 1119 79 HOH HOH . 
F 4 HOH B 20 1120 140 HOH HOH . 
F 4 HOH B 21 1121 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 19.621 16.106 43.663 1 13.18 ? C1 GOL 1002 A 1 
HETATM 2 O O1 GOL . . . D 3 20.501 16.113 42.567 1 41.02 ? O1 GOL 1002 A 1 
HETATM 3 C C2 GOL . . . D 3 18.55 15.081 43.462 1 4.9 ? C2 GOL 1002 A 1 
HETATM 4 O O2 GOL . . . D 3 18.737 13.921 44.228 1 17.13 ? O2 GOL 1002 A 1 
HETATM 5 C C3 GOL . . . D 3 17.18 15.668 43.584 1 14.53 ? C3 GOL 1002 A 1 
HETATM 6 O O3 GOL . . . D 3 16.68 15.881 42.282 1 46.29 ? O3 GOL 1002 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#