data_5GP9 # _model_server_result.job_id 59XWWcbznEjUMJS1ep36QA _model_server_result.datetime_utc '2024-12-27 15:11:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gp9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 5GP9 # _exptl.entry_id 5GP9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5GP9 _cell.length_a 56.873 _cell.length_b 56.873 _cell.length_c 200.884 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GP9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MG MG . A MG 201 1_555 H O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc2 C MG MG . A MG 201 1_555 H O HOH . A HOH 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc3 C MG MG . A MG 201 1_555 H O HOH . A HOH 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc4 C MG MG . A MG 201 1_555 H O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc5 C MG MG . A MG 201 1_555 I O HOH . B HOH 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc6 C MG MG . A MG 201 1_555 I O HOH . B HOH 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5GP9 _atom_sites.fract_transf_matrix[1][1] 0.017583 _atom_sites.fract_transf_matrix[1][2] 0.010152 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020303 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 201 2 MG MG . D 3 GOL A 1 202 3 GOL GOL . E 4 PLM A 1 203 503 PLM PLM . F 3 GOL B 1 201 1 GOL GOL . G 4 PLM B 1 202 502 PLM PLM . H 5 HOH A 1 301 207 HOH HOH . H 5 HOH A 2 302 169 HOH HOH . H 5 HOH A 3 303 104 HOH HOH . H 5 HOH A 4 304 84 HOH HOH . H 5 HOH A 5 305 221 HOH HOH . H 5 HOH A 6 306 202 HOH HOH . H 5 HOH A 7 307 48 HOH HOH . H 5 HOH A 8 308 115 HOH HOH . H 5 HOH A 9 309 217 HOH HOH . H 5 HOH A 10 310 112 HOH HOH . H 5 HOH A 11 311 223 HOH HOH . H 5 HOH A 12 312 97 HOH HOH . H 5 HOH A 13 313 51 HOH HOH . H 5 HOH A 14 314 119 HOH HOH . H 5 HOH A 15 315 121 HOH HOH . H 5 HOH A 16 316 54 HOH HOH . H 5 HOH A 17 317 241 HOH HOH . H 5 HOH A 18 318 70 HOH HOH . H 5 HOH A 19 319 86 HOH HOH . H 5 HOH A 20 320 107 HOH HOH . H 5 HOH A 21 321 262 HOH HOH . H 5 HOH A 22 322 88 HOH HOH . H 5 HOH A 23 323 30 HOH HOH . H 5 HOH A 24 324 41 HOH HOH . H 5 HOH A 25 325 39 HOH HOH . H 5 HOH A 26 326 58 HOH HOH . H 5 HOH A 27 327 110 HOH HOH . H 5 HOH A 28 328 81 HOH HOH . H 5 HOH A 29 329 261 HOH HOH . H 5 HOH A 30 330 260 HOH HOH . H 5 HOH A 31 331 239 HOH HOH . H 5 HOH A 32 332 66 HOH HOH . H 5 HOH A 33 333 248 HOH HOH . H 5 HOH A 34 334 200 HOH HOH . H 5 HOH A 35 335 15 HOH HOH . H 5 HOH A 36 336 99 HOH HOH . H 5 HOH A 37 337 89 HOH HOH . H 5 HOH A 38 338 100 HOH HOH . H 5 HOH A 39 339 31 HOH HOH . H 5 HOH A 40 340 130 HOH HOH . H 5 HOH A 41 341 242 HOH HOH . H 5 HOH A 42 342 111 HOH HOH . H 5 HOH A 43 343 68 HOH HOH . H 5 HOH A 44 344 142 HOH HOH . H 5 HOH A 45 345 28 HOH HOH . H 5 HOH A 46 346 21 HOH HOH . H 5 HOH A 47 347 50 HOH HOH . H 5 HOH A 48 348 12 HOH HOH . H 5 HOH A 49 349 108 HOH HOH . H 5 HOH A 50 350 178 HOH HOH . H 5 HOH A 51 351 139 HOH HOH . H 5 HOH A 52 352 204 HOH HOH . H 5 HOH A 53 353 174 HOH HOH . H 5 HOH A 54 354 77 HOH HOH . H 5 HOH A 55 355 9 HOH HOH . H 5 HOH A 56 356 231 HOH HOH . H 5 HOH A 57 357 134 HOH HOH . H 5 HOH A 58 358 14 HOH HOH . H 5 HOH A 59 359 193 HOH HOH . H 5 HOH A 60 360 8 HOH HOH . H 5 HOH A 61 361 63 HOH HOH . H 5 HOH A 62 362 171 HOH HOH . H 5 HOH A 63 363 240 HOH HOH . H 5 HOH A 64 364 35 HOH HOH . H 5 HOH A 65 365 37 HOH HOH . H 5 HOH A 66 366 5 HOH HOH . H 5 HOH A 67 367 133 HOH HOH . H 5 HOH A 68 368 20 HOH HOH . H 5 HOH A 69 369 211 HOH HOH . H 5 HOH A 70 370 83 HOH HOH . H 5 HOH A 71 371 49 HOH HOH . H 5 HOH A 72 372 230 HOH HOH . H 5 HOH A 73 373 26 HOH HOH . H 5 HOH A 74 374 17 HOH HOH . H 5 HOH A 75 375 216 HOH HOH . H 5 HOH A 76 376 143 HOH HOH . H 5 HOH A 77 377 140 HOH HOH . H 5 HOH A 78 378 40 HOH HOH . H 5 HOH A 79 379 144 HOH HOH . H 5 HOH A 80 380 253 HOH HOH . H 5 HOH A 81 381 154 HOH HOH . H 5 HOH A 82 382 38 HOH HOH . H 5 HOH A 83 383 180 HOH HOH . H 5 HOH A 84 384 269 HOH HOH . H 5 HOH A 85 385 272 HOH HOH . H 5 HOH A 86 386 18 HOH HOH . H 5 HOH A 87 387 136 HOH HOH . H 5 HOH A 88 388 249 HOH HOH . H 5 HOH A 89 389 203 HOH HOH . H 5 HOH A 90 390 185 HOH HOH . H 5 HOH A 91 391 96 HOH HOH . H 5 HOH A 92 392 255 HOH HOH . H 5 HOH A 93 393 75 HOH HOH . H 5 HOH A 94 394 205 HOH HOH . H 5 HOH A 95 395 168 HOH HOH . H 5 HOH A 96 396 157 HOH HOH . H 5 HOH A 97 397 268 HOH HOH . H 5 HOH A 98 398 76 HOH HOH . H 5 HOH A 99 399 129 HOH HOH . H 5 HOH A 100 400 236 HOH HOH . H 5 HOH A 101 401 275 HOH HOH . H 5 HOH A 102 402 79 HOH HOH . H 5 HOH A 103 403 274 HOH HOH . H 5 HOH A 104 404 163 HOH HOH . H 5 HOH A 105 405 234 HOH HOH . H 5 HOH A 106 406 141 HOH HOH . H 5 HOH A 107 407 212 HOH HOH . H 5 HOH A 108 408 189 HOH HOH . H 5 HOH A 109 409 123 HOH HOH . H 5 HOH A 110 410 237 HOH HOH . H 5 HOH A 111 411 159 HOH HOH . H 5 HOH A 112 412 229 HOH HOH . H 5 HOH A 113 413 270 HOH HOH . H 5 HOH A 114 414 64 HOH HOH . H 5 HOH A 115 415 170 HOH HOH . H 5 HOH A 116 416 198 HOH HOH . H 5 HOH A 117 417 219 HOH HOH . H 5 HOH A 118 418 213 HOH HOH . H 5 HOH A 119 419 67 HOH HOH . H 5 HOH A 120 420 167 HOH HOH . H 5 HOH A 121 421 206 HOH HOH . H 5 HOH A 122 422 188 HOH HOH . H 5 HOH A 123 423 158 HOH HOH . H 5 HOH A 124 424 149 HOH HOH . H 5 HOH A 125 425 191 HOH HOH . H 5 HOH A 126 426 172 HOH HOH . H 5 HOH A 127 427 247 HOH HOH . H 5 HOH A 128 428 238 HOH HOH . H 5 HOH A 129 429 218 HOH HOH . H 5 HOH A 130 430 137 HOH HOH . H 5 HOH A 131 431 226 HOH HOH . H 5 HOH A 132 432 160 HOH HOH . H 5 HOH A 133 433 233 HOH HOH . H 5 HOH A 134 434 194 HOH HOH . H 5 HOH A 135 435 196 HOH HOH . H 5 HOH A 136 436 251 HOH HOH . H 5 HOH A 137 437 105 HOH HOH . H 5 HOH A 138 438 228 HOH HOH . H 5 HOH A 139 439 122 HOH HOH . H 5 HOH A 140 440 201 HOH HOH . H 5 HOH A 141 441 254 HOH HOH . H 5 HOH A 142 442 264 HOH HOH . I 5 HOH B 1 301 273 HOH HOH . I 5 HOH B 2 302 214 HOH HOH . I 5 HOH B 3 303 256 HOH HOH . I 5 HOH B 4 304 120 HOH HOH . I 5 HOH B 5 305 91 HOH HOH . I 5 HOH B 6 306 55 HOH HOH . I 5 HOH B 7 307 98 HOH HOH . I 5 HOH B 8 308 126 HOH HOH . I 5 HOH B 9 309 27 HOH HOH . I 5 HOH B 10 310 53 HOH HOH . I 5 HOH B 11 311 177 HOH HOH . I 5 HOH B 12 312 103 HOH HOH . I 5 HOH B 13 313 210 HOH HOH . I 5 HOH B 14 314 46 HOH HOH . I 5 HOH B 15 315 259 HOH HOH . I 5 HOH B 16 316 4 HOH HOH . I 5 HOH B 17 317 243 HOH HOH . I 5 HOH B 18 318 165 HOH HOH . I 5 HOH B 19 319 131 HOH HOH . I 5 HOH B 20 320 93 HOH HOH . I 5 HOH B 21 321 124 HOH HOH . I 5 HOH B 22 322 22 HOH HOH . I 5 HOH B 23 323 52 HOH HOH . I 5 HOH B 24 324 106 HOH HOH . I 5 HOH B 25 325 127 HOH HOH . I 5 HOH B 26 326 258 HOH HOH . I 5 HOH B 27 327 95 HOH HOH . I 5 HOH B 28 328 94 HOH HOH . I 5 HOH B 29 329 175 HOH HOH . I 5 HOH B 30 330 190 HOH HOH . I 5 HOH B 31 331 102 HOH HOH . I 5 HOH B 32 332 60 HOH HOH . I 5 HOH B 33 333 87 HOH HOH . I 5 HOH B 34 334 57 HOH HOH . I 5 HOH B 35 335 24 HOH HOH . I 5 HOH B 36 336 71 HOH HOH . I 5 HOH B 37 337 183 HOH HOH . I 5 HOH B 38 338 173 HOH HOH . I 5 HOH B 39 339 85 HOH HOH . I 5 HOH B 40 340 156 HOH HOH . I 5 HOH B 41 341 44 HOH HOH . I 5 HOH B 42 342 11 HOH HOH . I 5 HOH B 43 343 138 HOH HOH . I 5 HOH B 44 344 195 HOH HOH . I 5 HOH B 45 345 153 HOH HOH . I 5 HOH B 46 346 2 HOH HOH . I 5 HOH B 47 347 209 HOH HOH . I 5 HOH B 48 348 113 HOH HOH . I 5 HOH B 49 349 90 HOH HOH . I 5 HOH B 50 350 147 HOH HOH . I 5 HOH B 51 351 267 HOH HOH . I 5 HOH B 52 352 25 HOH HOH . I 5 HOH B 53 353 184 HOH HOH . I 5 HOH B 54 354 34 HOH HOH . I 5 HOH B 55 355 32 HOH HOH . I 5 HOH B 56 356 10 HOH HOH . I 5 HOH B 57 357 78 HOH HOH . I 5 HOH B 58 358 125 HOH HOH . I 5 HOH B 59 359 61 HOH HOH . I 5 HOH B 60 360 16 HOH HOH . I 5 HOH B 61 361 45 HOH HOH . I 5 HOH B 62 362 13 HOH HOH . I 5 HOH B 63 363 62 HOH HOH . I 5 HOH B 64 364 7 HOH HOH . I 5 HOH B 65 365 208 HOH HOH . I 5 HOH B 66 366 33 HOH HOH . I 5 HOH B 67 367 36 HOH HOH . I 5 HOH B 68 368 132 HOH HOH . I 5 HOH B 69 369 155 HOH HOH . I 5 HOH B 70 370 69 HOH HOH . I 5 HOH B 71 371 166 HOH HOH . I 5 HOH B 72 372 43 HOH HOH . I 5 HOH B 73 373 181 HOH HOH . I 5 HOH B 74 374 199 HOH HOH . I 5 HOH B 75 375 74 HOH HOH . I 5 HOH B 76 376 29 HOH HOH . I 5 HOH B 77 377 82 HOH HOH . I 5 HOH B 78 378 162 HOH HOH . I 5 HOH B 79 379 232 HOH HOH . I 5 HOH B 80 380 65 HOH HOH . I 5 HOH B 81 381 80 HOH HOH . I 5 HOH B 82 382 19 HOH HOH . I 5 HOH B 83 383 246 HOH HOH . I 5 HOH B 84 384 135 HOH HOH . I 5 HOH B 85 385 182 HOH HOH . I 5 HOH B 86 386 92 HOH HOH . I 5 HOH B 87 387 42 HOH HOH . I 5 HOH B 88 388 23 HOH HOH . I 5 HOH B 89 389 244 HOH HOH . I 5 HOH B 90 390 1 HOH HOH . I 5 HOH B 91 391 252 HOH HOH . I 5 HOH B 92 392 59 HOH HOH . I 5 HOH B 93 393 227 HOH HOH . I 5 HOH B 94 394 6 HOH HOH . I 5 HOH B 95 395 225 HOH HOH . I 5 HOH B 96 396 145 HOH HOH . I 5 HOH B 97 397 47 HOH HOH . I 5 HOH B 98 398 3 HOH HOH . I 5 HOH B 99 399 220 HOH HOH . I 5 HOH B 100 400 276 HOH HOH . I 5 HOH B 101 401 224 HOH HOH . I 5 HOH B 102 402 263 HOH HOH . I 5 HOH B 103 403 118 HOH HOH . I 5 HOH B 104 404 197 HOH HOH . I 5 HOH B 105 405 151 HOH HOH . I 5 HOH B 106 406 152 HOH HOH . I 5 HOH B 107 407 161 HOH HOH . I 5 HOH B 108 408 56 HOH HOH . I 5 HOH B 109 409 128 HOH HOH . I 5 HOH B 110 410 146 HOH HOH . I 5 HOH B 111 411 187 HOH HOH . I 5 HOH B 112 412 235 HOH HOH . I 5 HOH B 113 413 73 HOH HOH . I 5 HOH B 114 414 72 HOH HOH . I 5 HOH B 115 415 245 HOH HOH . I 5 HOH B 116 416 176 HOH HOH . I 5 HOH B 117 417 271 HOH HOH . I 5 HOH B 118 418 117 HOH HOH . I 5 HOH B 119 419 109 HOH HOH . I 5 HOH B 120 420 222 HOH HOH . I 5 HOH B 121 421 186 HOH HOH . I 5 HOH B 122 422 266 HOH HOH . I 5 HOH B 123 423 114 HOH HOH . I 5 HOH B 124 424 116 HOH HOH . I 5 HOH B 125 425 101 HOH HOH . I 5 HOH B 126 426 250 HOH HOH . I 5 HOH B 127 427 277 HOH HOH . I 5 HOH B 128 428 265 HOH HOH . I 5 HOH B 129 429 215 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 23.851 -16.74 -27.066 1 41.33 ? C1 GOL 201 B 1 HETATM 2 O O1 GOL . . . F 3 23.112 -16.011 -28.112 1 38.84 ? O1 GOL 201 B 1 HETATM 3 C C2 GOL . . . F 3 23.774 -16.018 -25.709 1 42.74 ? C2 GOL 201 B 1 HETATM 4 O O2 GOL . . . F 3 24.104 -16.871 -24.601 1 38.75 ? O2 GOL 201 B 1 HETATM 5 C C3 GOL . . . F 3 24.698 -14.791 -25.65 1 39.61 ? C3 GOL 201 B 1 HETATM 6 O O3 GOL . . . F 3 26.091 -15.188 -25.669 1 39.38 ? O3 GOL 201 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #