data_5GQ1 # _model_server_result.job_id aDh0vu3MQh10b_Yz8TAG-Q _model_server_result.datetime_utc '2024-11-26 18:20:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gq1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":402}' # _entry.id 5GQ1 # _exptl.entry_id 5GQ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.16 _cell.angle_gamma 90 _cell.entry_id 5GQ1 _cell.length_a 52.109 _cell.length_b 159.654 _cell.length_c 75.606 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GQ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 155 A CYS 270 1_555 G ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc2 A SG CYS 166 A CYS 281 1_555 G ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc3 A SG CYS 171 A CYS 286 1_555 G ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc4 G ZN ZN . A ZN 401 1_555 O O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc5 B SG CYS 155 B CYS 270 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc6 B SG CYS 171 B CYS 286 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc7 C SG CYS 155 C CYS 270 1_555 J ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc8 C SG CYS 166 C CYS 281 1_555 J ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc9 C SG CYS 171 C CYS 286 1_555 J ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc10 D SG CYS 155 D CYS 270 1_555 K ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc11 D SG CYS 166 D CYS 281 1_555 K ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc12 D SG CYS 171 D CYS 286 1_555 K ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc13 E SG CYS 166 E CYS 281 1_555 M ZN ZN . E ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc14 E SG CYS 171 E CYS 286 1_555 M ZN ZN . E ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? metalc ? metalc15 F SG CYS 155 F CYS 270 1_555 N ZN ZN . F ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc16 F SG CYS 166 F CYS 281 1_555 N ZN ZN . F ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc17 F SG CYS 171 F CYS 286 1_555 N ZN ZN . F ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 5GQ1 _atom_sites.fract_transf_matrix[1][1] 0.019191 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000055 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013227 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ZN A 1 401 1 ZN ZN . H 2 ZN B 1 401 2 ZN ZN . I 3 PO4 B 1 402 1 PO4 PO4 . J 2 ZN C 1 401 6 ZN ZN . K 2 ZN D 1 401 3 ZN ZN . L 3 PO4 D 1 402 2 PO4 PO4 . M 2 ZN E 1 401 4 ZN ZN . N 2 ZN F 1 401 5 ZN ZN . O 4 HOH A 1 501 17 HOH HOH . O 4 HOH A 2 502 27 HOH HOH . O 4 HOH A 3 503 36 HOH HOH . O 4 HOH A 4 504 25 HOH HOH . O 4 HOH A 5 505 13 HOH HOH . O 4 HOH A 6 506 33 HOH HOH . O 4 HOH A 7 507 18 HOH HOH . O 4 HOH A 8 508 22 HOH HOH . O 4 HOH A 9 509 15 HOH HOH . O 4 HOH A 10 510 31 HOH HOH . O 4 HOH A 11 511 30 HOH HOH . P 4 HOH B 1 501 7 HOH HOH . P 4 HOH B 2 502 3 HOH HOH . P 4 HOH B 3 503 4 HOH HOH . Q 4 HOH C 1 501 34 HOH HOH . Q 4 HOH C 2 502 6 HOH HOH . Q 4 HOH C 3 503 28 HOH HOH . Q 4 HOH C 4 504 26 HOH HOH . Q 4 HOH C 5 505 5 HOH HOH . Q 4 HOH C 6 506 9 HOH HOH . R 4 HOH D 1 501 20 HOH HOH . R 4 HOH D 2 502 11 HOH HOH . R 4 HOH D 3 503 1 HOH HOH . R 4 HOH D 4 504 29 HOH HOH . R 4 HOH D 5 505 8 HOH HOH . R 4 HOH D 6 506 19 HOH HOH . R 4 HOH D 7 507 2 HOH HOH . R 4 HOH D 8 508 14 HOH HOH . R 4 HOH D 9 509 16 HOH HOH . S 4 HOH E 1 501 35 HOH HOH . S 4 HOH E 2 502 21 HOH HOH . S 4 HOH E 3 503 32 HOH HOH . T 4 HOH F 1 501 10 HOH HOH . T 4 HOH F 2 502 24 HOH HOH . T 4 HOH F 3 503 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . L 3 46.018 128.957 91.793 1 101.8 ? P PO4 402 D 1 HETATM 2 O O1 PO4 . . . L 3 46.99 128.747 90.639 1 96.37 ? O1 PO4 402 D 1 HETATM 3 O O2 PO4 . . . L 3 45.192 130.203 91.53 1 79.16 ? O2 PO4 402 D 1 HETATM 4 O O3 PO4 . . . L 3 45.16 127.711 91.89 1 95.14 ? O3 PO4 402 D 1 HETATM 5 O O4 PO4 . . . L 3 46.746 129.15 93.121 1 87.05 ? O4 PO4 402 D 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #