data_5GRE # _model_server_result.job_id bmutIoI4YZ1mVLMslD50Tg _model_server_result.datetime_utc '2025-07-16 15:17:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gre # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":403}' # _entry.id 5GRE # _exptl.entry_id 5GRE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5GRE _cell.length_a 104.91 _cell.length_b 104.91 _cell.length_c 146.25 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GRE _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 230 A ASP 230 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? metalc ? metalc2 A OD2 ASP 234 A ASP 234 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc3 C MG MG . A MG 401 1_555 G O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc4 C MG MG . A MG 401 1_555 B OD2 ASP 215 B ASP 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc5 B OD1 ASN 78 B ASN 78 1_555 E MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc6 B O ARG 272 B ARG 272 1_555 E MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc7 D O3B ADP . B ADP 401 1_555 E MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc8 E MG MG . B MG 402 1_555 F O5 CIT . B CIT 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc9 E MG MG . B MG 402 1_555 H O HOH . B HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 114 n n C1 O2 CIT sing 115 n n C1 C2 CIT sing 116 n n O2 HO2 CIT sing 117 n n C2 C3 CIT sing 118 n n C2 H21 CIT sing 119 n n C2 H22 CIT sing 120 n n C3 O7 CIT sing 121 n n C3 C4 CIT sing 122 n n C3 C6 CIT sing 123 n n O7 HO7 CIT sing 124 n n C4 C5 CIT sing 125 n n C4 H41 CIT sing 126 n n C4 H42 CIT sing 127 n n C5 O3 CIT doub 128 n n C5 O4 CIT sing 129 n n O4 HO4 CIT sing 130 n n C6 O5 CIT doub 131 n n C6 O6 CIT sing 132 n n O6 HO6 CIT sing 133 n n # _atom_sites.entry_id 5GRE _atom_sites.fract_transf_matrix[1][1] 0.009532 _atom_sites.fract_transf_matrix[1][2] 0.005503 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006838 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 401 1 MG MG . D 4 ADP B 1 401 1 ADP ADP . E 3 MG B 1 402 1 MG MG . F 5 CIT B 1 403 1 CIT CIT . G 6 HOH A 1 501 97 HOH HOH . G 6 HOH A 2 502 28 HOH HOH . G 6 HOH A 3 503 24 HOH HOH . G 6 HOH A 4 504 72 HOH HOH . G 6 HOH A 5 505 99 HOH HOH . G 6 HOH A 6 506 58 HOH HOH . G 6 HOH A 7 507 70 HOH HOH . G 6 HOH A 8 508 94 HOH HOH . G 6 HOH A 9 509 29 HOH HOH . G 6 HOH A 10 510 30 HOH HOH . G 6 HOH A 11 511 82 HOH HOH . H 6 HOH B 1 501 108 HOH HOH . H 6 HOH B 2 502 6 HOH HOH . H 6 HOH B 3 503 39 HOH HOH . H 6 HOH B 4 504 25 HOH HOH . H 6 HOH B 5 505 43 HOH HOH . H 6 HOH B 6 506 4 HOH HOH . H 6 HOH B 7 507 11 HOH HOH . H 6 HOH B 8 508 3 HOH HOH . H 6 HOH B 9 509 66 HOH HOH . H 6 HOH B 10 510 69 HOH HOH . H 6 HOH B 11 511 53 HOH HOH . H 6 HOH B 12 512 16 HOH HOH . H 6 HOH B 13 513 41 HOH HOH . H 6 HOH B 14 514 5 HOH HOH . H 6 HOH B 15 515 56 HOH HOH . H 6 HOH B 16 516 13 HOH HOH . H 6 HOH B 17 517 47 HOH HOH . H 6 HOH B 18 518 1 HOH HOH . H 6 HOH B 19 519 102 HOH HOH . H 6 HOH B 20 520 33 HOH HOH . H 6 HOH B 21 521 7 HOH HOH . H 6 HOH B 22 522 22 HOH HOH . H 6 HOH B 23 523 65 HOH HOH . H 6 HOH B 24 524 32 HOH HOH . H 6 HOH B 25 525 21 HOH HOH . H 6 HOH B 26 526 106 HOH HOH . H 6 HOH B 27 527 46 HOH HOH . H 6 HOH B 28 528 55 HOH HOH . H 6 HOH B 29 529 17 HOH HOH . H 6 HOH B 30 530 19 HOH HOH . H 6 HOH B 31 531 18 HOH HOH . H 6 HOH B 32 532 107 HOH HOH . H 6 HOH B 33 533 10 HOH HOH . H 6 HOH B 34 534 9 HOH HOH . H 6 HOH B 35 535 23 HOH HOH . H 6 HOH B 36 536 2 HOH HOH . H 6 HOH B 37 537 103 HOH HOH . H 6 HOH B 38 538 93 HOH HOH . H 6 HOH B 39 539 14 HOH HOH . H 6 HOH B 40 540 26 HOH HOH . H 6 HOH B 41 541 64 HOH HOH . H 6 HOH B 42 542 20 HOH HOH . H 6 HOH B 43 543 42 HOH HOH . H 6 HOH B 44 544 15 HOH HOH . H 6 HOH B 45 545 73 HOH HOH . H 6 HOH B 46 546 68 HOH HOH . H 6 HOH B 47 547 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . F 5 10.302 41.547 -19.927 1 35.55 ? C1 CIT 403 B 1 HETATM 2 O O1 CIT . . . F 5 11.429 41.883 -20.367 1 36.19 ? O1 CIT 403 B 1 HETATM 3 O O2 CIT . . . F 5 9.924 40.392 -20.176 1 41.68 ? O2 CIT 403 B 1 HETATM 4 C C2 CIT . . . F 5 9.41 42.458 -19.104 1 31.6 ? C2 CIT 403 B 1 HETATM 5 C C3 CIT . . . F 5 9.994 43.845 -19.056 1 28.94 ? C3 CIT 403 B 1 HETATM 6 O O7 CIT . . . F 5 11.273 43.874 -18.453 1 29.35 ? O7 CIT 403 B 1 HETATM 7 C C4 CIT . . . F 5 8.968 44.783 -18.484 1 26.87 ? C4 CIT 403 B 1 HETATM 8 C C5 CIT . . . F 5 8.939 44.872 -16.996 1 25.88 ? C5 CIT 403 B 1 HETATM 9 O O3 CIT . . . F 5 9.288 45.944 -16.427 1 25.46 ? O3 CIT 403 B 1 HETATM 10 O O4 CIT . . . F 5 8.529 43.911 -16.342 1 24.9 ? O4 CIT 403 B 1 HETATM 11 C C6 CIT . . . F 5 10.209 44.362 -20.425 1 31.64 ? C6 CIT 403 B 1 HETATM 12 O O5 CIT . . . F 5 9.523 43.852 -21.347 1 30.98 ? O5 CIT 403 B 1 HETATM 13 O O6 CIT . . . F 5 11.055 45.294 -20.625 1 28.41 ? O6 CIT 403 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 371 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #