data_5GRK # _model_server_result.job_id im-5jCgEFgji2NJk8D455w _model_server_result.datetime_utc '2024-11-27 17:36:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5grk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 5GRK # _exptl.entry_id 5GRK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.111 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description XANTHINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5GRK _cell.length_a 70.023 _cell.length_b 89.894 _cell.length_c 255.339 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GRK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F 1 1 C,D,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id O _struct_conn.ptnr1_label_comp_id TYR _struct_conn.ptnr1_label_seq_id 101 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id TYR _struct_conn.ptnr1_auth_seq_id 101 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CG _struct_conn.ptnr2_label_comp_id GLN _struct_conn.ptnr2_label_seq_id 103 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id GLN _struct_conn.ptnr2_auth_seq_id 103 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.326 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C5 H4 N4 O2' _chem_comp.formula_weight 152.111 _chem_comp.id XAN _chem_comp.mon_nstd_flag . _chem_comp.name XANTHINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C4 XAN sing 374 n y N9 C8 XAN sing 375 n y N9 HN9 XAN sing 376 n n C4 N3 XAN sing 377 n y C4 C5 XAN doub 378 n y N3 C2 XAN sing 379 n y N3 HN3 XAN sing 380 n n C2 O2 XAN doub 381 n n C2 N1 XAN sing 382 n y N1 C6 XAN sing 383 n y N1 HN1 XAN sing 384 n n C6 O6 XAN doub 385 n n C6 C5 XAN sing 386 n y C5 N7 XAN sing 387 n y N7 C8 XAN doub 388 n y C8 H8 XAN sing 389 n n # _atom_sites.entry_id 5GRK _atom_sites.fract_transf_matrix[1][1] 0.014281 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011124 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 XAN A 1 301 7723 XAN XAN . F 2 XAN B 1 301 7724 XAN XAN . G 2 XAN C 1 301 7725 XAN XAN . H 2 XAN D 1 301 7726 XAN XAN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 XAN . . . E 2 12.909 11.547 114.296 1 34.07 ? N9 XAN 301 A 1 HETATM 2 C C4 XAN . . . E 2 13.104 12.869 114.227 1 34.91 ? C4 XAN 301 A 1 HETATM 3 N N3 XAN . . . E 2 12.842 13.816 113.321 1 32.77 ? N3 XAN 301 A 1 HETATM 4 C C2 XAN . . . E 2 13.169 15.103 113.544 1 37.01 ? C2 XAN 301 A 1 HETATM 5 O O2 XAN . . . E 2 12.899 15.945 112.661 1 36.44 ? O2 XAN 301 A 1 HETATM 6 N N1 XAN . . . E 2 13.771 15.529 114.671 1 38.33 ? N1 XAN 301 A 1 HETATM 7 C C6 XAN . . . E 2 14.09 14.687 115.661 1 34.33 ? C6 XAN 301 A 1 HETATM 8 O O6 XAN . . . E 2 14.649 15.096 116.702 1 32.81 ? O6 XAN 301 A 1 HETATM 9 C C5 XAN . . . E 2 13.76 13.254 115.484 1 36.59 ? C5 XAN 301 A 1 HETATM 10 N N7 XAN . . . E 2 13.906 12.128 116.207 1 37.35 ? N7 XAN 301 A 1 HETATM 11 C C8 XAN . . . E 2 13.39 11.099 115.486 1 35.47 ? C8 XAN 301 A 1 HETATM 12 H HN9 XAN . . . E 2 12.463 10.96 113.562 1 40.88 ? HN9 XAN 301 A 1 HETATM 13 H HN3 XAN . . . E 2 12.378 13.554 112.428 1 39.32 ? HN3 XAN 301 A 1 HETATM 14 H HN1 XAN . . . E 2 13.994 16.54 114.775 1 45.99 ? HN1 XAN 301 A 1 HETATM 15 H H8 XAN . . . E 2 13.366 10.067 115.813 1 42.57 ? H8 XAN 301 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 15 #