data_5GRL # _model_server_result.job_id 8kzc0ZPlxm3Fq2HkW_Xs6A _model_server_result.datetime_utc '2024-11-05 00:19:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5grl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 5GRL # _exptl.entry_id 5GRL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ISOCITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5GRL _cell.length_a 111.238 _cell.length_b 111.238 _cell.length_c 145.478 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GRL _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 230 A ASP 230 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc2 A OD1 ASP 234 A ASP 234 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc3 C MG MG . A MG 401 1_555 B OD2 ASP 215 B ASP 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc4 B OD1 ASN 78 B ASN 78 1_555 F MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc5 B O ARG 272 B ARG 272 1_555 F MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc6 D O2B ADP . B ADP 401 1_555 F MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc7 E O4 ICT . B ICT 402 1_555 F MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id ICT _chem_comp.mon_nstd_flag . _chem_comp.name 'ISOCITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 ICT doub 194 n n C1 O2 ICT sing 195 n n C1 C2 ICT sing 196 n n O2 HO2 ICT sing 197 n n C2 O7 ICT sing 198 n n C2 C3 ICT sing 199 n n C2 H2 ICT sing 200 n n O7 HO7 ICT sing 201 n n C3 C4 ICT sing 202 n n C3 C6 ICT sing 203 n n C3 H3 ICT sing 204 n n C4 C5 ICT sing 205 n n C4 H41 ICT sing 206 n n C4 H42 ICT sing 207 n n C5 O3 ICT doub 208 n n C5 O4 ICT sing 209 n n O4 HO4 ICT sing 210 n n C6 O5 ICT doub 211 n n C6 O6 ICT sing 212 n n O6 HO6 ICT sing 213 n n # _atom_sites.entry_id 5GRL _atom_sites.fract_transf_matrix[1][1] 0.00899 _atom_sites.fract_transf_matrix[1][2] 0.00519 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01038 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006874 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 401 1 MG MG . D 4 ADP B 1 401 1 ADP ADP . E 5 ICT B 1 402 1 ICT ICT . F 3 MG B 1 403 2 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ICT . . . E 5 9.154 47.77 -16.19 1 34.43 ? C1 ICT 402 B 1 HETATM 2 O O1 ICT . . . E 5 9.314 49.02 -16.179 1 30.98 ? O1 ICT 402 B 1 HETATM 3 O O2 ICT . . . E 5 8.768 47.185 -15.14 1 31.59 ? O2 ICT 402 B 1 HETATM 4 C C2 ICT . . . E 5 9.382 46.954 -17.45 1 35.09 ? C2 ICT 402 B 1 HETATM 5 O O7 ICT . . . E 5 8.916 45.641 -17.214 1 37.08 ? O7 ICT 402 B 1 HETATM 6 C C3 ICT . . . E 5 10.856 46.904 -17.838 1 34.9 ? C3 ICT 402 B 1 HETATM 7 C C4 ICT . . . E 5 11.23 48.034 -18.766 1 34.52 ? C4 ICT 402 B 1 HETATM 8 C C5 ICT . . . E 5 10.456 48.038 -20.043 1 33.36 ? C5 ICT 402 B 1 HETATM 9 O O3 ICT . . . E 5 10.883 48.825 -20.925 1 36.51 ? O3 ICT 402 B 1 HETATM 10 O O4 ICT . . . E 5 9.453 47.298 -20.275 1 31.79 ? O4 ICT 402 B 1 HETATM 11 C C6 ICT . . . E 5 11.361 45.688 -18.58 1 34.49 ? C6 ICT 402 B 1 HETATM 12 O O5 ICT . . . E 5 10.577 44.909 -19.184 1 32.9 ? O5 ICT 402 B 1 HETATM 13 O O6 ICT . . . E 5 12.607 45.503 -18.593 1 33.18 ? O6 ICT 402 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #