data_5GRT
#
_model_server_result.job_id            HKJOFJNbuiUx8ScFuIDkwg 
_model_server_result.datetime_utc      '2024-11-30 02:05:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5grt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":479}' 
#
_entry.id    5GRT 
#
_exptl.entry_id    5GRT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         58.41 
_cell.entry_id            5GRT 
_cell.length_a            120.12 
_cell.length_b            84.79 
_cell.length_c            63.65 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GRT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'B 1 1 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 164.53616 72.22568 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 41 A CYS 58 1_555 A SG CYS 46 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
disulf ? disulf2 A SG CYS 73 A CYS 90 1_555 A SG CYS 73 A CYS 90 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     5GRT 
_atom_sites.fract_transf_matrix[1][1]    0.008325 
_atom_sites.fract_transf_matrix[1][2]    -0.00512 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013845 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015711 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 479 479 FAD FAD . 
C 3 TS4 A 1 17 17 TS4 TS4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . B 2 59.34 50.775 20.34 1 6.27 ? PA FAD 479 A 1 
HETATM 2 O O1A FAD . . . B 2 59.523 51.965 19.555 1 14.62 ? O1A FAD 479 A 1 
HETATM 3 O O2A FAD . . . B 2 59.938 49.532 19.707 1 13.81 ? O2A FAD 479 A 1 
HETATM 4 O O5B FAD . . . B 2 57.783 50.523 20.517 1 12.45 ? O5B FAD 479 A 1 
HETATM 5 C C5B FAD . . . B 2 56.699 51.407 20.697 1 13.35 ? C5B FAD 479 A 1 
HETATM 6 C C4B FAD . . . B 2 55.459 51.028 19.868 1 13.8 ? C4B FAD 479 A 1 
HETATM 7 O O4B FAD . . . B 2 54.483 51.937 20.427 1 14.68 ? O4B FAD 479 A 1 
HETATM 8 C C3B FAD . . . B 2 55.507 51.251 18.334 1 11.45 ? C3B FAD 479 A 1 
HETATM 9 O O3B FAD . . . B 2 55.069 50.221 17.531 1 11.58 ? O3B FAD 479 A 1 
HETATM 10 C C2B FAD . . . B 2 54.554 52.379 18.224 1 12.23 ? C2B FAD 479 A 1 
HETATM 11 O O2B FAD . . . B 2 53.908 52.34 16.995 1 14.49 ? O2B FAD 479 A 1 
HETATM 12 C C1B FAD . . . B 2 53.604 52.215 19.374 1 14.41 ? C1B FAD 479 A 1 
HETATM 13 N N9A FAD . . . B 2 52.936 53.432 19.878 1 15.8 ? N9A FAD 479 A 1 
HETATM 14 C C8A FAD . . . B 2 53.462 54.659 20.145 1 15.89 ? C8A FAD 479 A 1 
HETATM 15 N N7A FAD . . . B 2 52.626 55.511 20.653 1 14.07 ? N7A FAD 479 A 1 
HETATM 16 C C5A FAD . . . B 2 51.453 54.763 20.808 1 16.01 ? C5A FAD 479 A 1 
HETATM 17 C C6A FAD . . . B 2 50.137 55.094 21.301 1 13.55 ? C6A FAD 479 A 1 
HETATM 18 N N6A FAD . . . B 2 49.784 56.237 21.864 1 11.49 ? N6A FAD 479 A 1 
HETATM 19 N N1A FAD . . . B 2 49.18 54.161 21.128 1 10.75 ? N1A FAD 479 A 1 
HETATM 20 C C2A FAD . . . B 2 49.477 52.971 20.617 1 10.63 ? C2A FAD 479 A 1 
HETATM 21 N N3A FAD . . . B 2 50.655 52.534 20.176 1 15.74 ? N3A FAD 479 A 1 
HETATM 22 C C4A FAD . . . B 2 51.615 53.516 20.252 1 17.57 ? C4A FAD 479 A 1 
HETATM 23 N N1 FAD . . . B 2 68.544 48.847 19.332 1 2 ? N1 FAD 479 A 1 
HETATM 24 C C2 FAD . . . B 2 69.311 47.81 19.57 1 2 ? C2 FAD 479 A 1 
HETATM 25 O O2 FAD . . . B 2 69.415 47.382 20.639 1 3.66 ? O2 FAD 479 A 1 
HETATM 26 N N3 FAD . . . B 2 70.083 47.233 18.628 1 2 ? N3 FAD 479 A 1 
HETATM 27 C C4 FAD . . . B 2 70.167 47.672 17.357 1 6.77 ? C4 FAD 479 A 1 
HETATM 28 O O4 FAD . . . B 2 70.892 47.102 16.54 1 10.14 ? O4 FAD 479 A 1 
HETATM 29 C C4X FAD . . . B 2 69.347 48.882 17.006 1 2 ? C4X FAD 479 A 1 
HETATM 30 N N5 FAD . . . B 2 69.376 49.391 15.809 1 2 ? N5 FAD 479 A 1 
HETATM 31 C C5X FAD . . . B 2 68.551 50.5 15.545 1 3.57 ? C5X FAD 479 A 1 
HETATM 32 C C6 FAD . . . B 2 68.593 51.067 14.26 1 2.73 ? C6 FAD 479 A 1 
HETATM 33 C C7 FAD . . . B 2 67.774 52.179 13.916 1 4.87 ? C7 FAD 479 A 1 
HETATM 34 C C7M FAD . . . B 2 67.893 52.571 12.979 1 4.78 ? C7M FAD 479 A 1 
HETATM 35 C C8 FAD . . . B 2 66.849 52.706 14.951 1 2 ? C8 FAD 479 A 1 
HETATM 36 C C8M FAD . . . B 2 66.196 53.431 14.784 1 2 ? C8M FAD 479 A 1 
HETATM 37 C C9 FAD . . . B 2 66.848 52.14 16.242 1 2 ? C9 FAD 479 A 1 
HETATM 38 C C9A FAD . . . B 2 67.672 51.064 16.582 1 4.16 ? C9A FAD 479 A 1 
HETATM 39 N N10 FAD . . . B 2 67.735 50.449 17.906 1 4.02 ? N10 FAD 479 A 1 
HETATM 40 C C10 FAD . . . B 2 68.553 49.368 18.132 1 2 ? C10 FAD 479 A 1 
HETATM 41 C C1' FAD . . . B 2 66.944 50.91 19.138 1 4.13 ? C1' FAD 479 A 1 
HETATM 42 C C2' FAD . . . B 2 65.637 50.084 19.427 1 5.07 ? C2' FAD 479 A 1 
HETATM 43 O O2' FAD . . . B 2 64.827 50.159 18.201 1 6.62 ? O2' FAD 479 A 1 
HETATM 44 C C3' FAD . . . B 2 64.757 50.79 20.454 1 5.2 ? C3' FAD 479 A 1 
HETATM 45 O O3' FAD . . . B 2 65.45 51.216 21.627 1 14.08 ? O3' FAD 479 A 1 
HETATM 46 C C4' FAD . . . B 2 63.738 49.882 20.899 1 5.62 ? C4' FAD 479 A 1 
HETATM 47 O O4' FAD . . . B 2 62.971 49.883 19.729 1 4.17 ? O4' FAD 479 A 1 
HETATM 48 C C5' FAD . . . B 2 63.046 50.494 22.187 1 7.05 ? C5' FAD 479 A 1 
HETATM 49 O O5' FAD . . . B 2 61.735 49.956 22.547 1 8.92 ? O5' FAD 479 A 1 
HETATM 50 P P FAD . . . B 2 60.423 50.691 23.18 1 9.28 ? P FAD 479 A 1 
HETATM 51 O O1P FAD . . . B 2 59.611 49.629 23.84 1 15.44 ? O1P FAD 479 A 1 
HETATM 52 O O2P FAD . . . B 2 60.617 51.937 24.045 1 11.17 ? O2P FAD 479 A 1 
HETATM 53 O O3P FAD . . . B 2 59.894 51.113 21.753 1 7.14 ? O3P FAD 479 A 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#