data_5GRT # _model_server_result.job_id PyrSbFNhmUwO6X0DuBLhuw _model_server_result.datetime_utc '2024-10-28 02:23:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5grt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":479}' # _entry.id 5GRT # _exptl.entry_id 5GRT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 58.41 _cell.entry_id 5GRT _cell.length_a 120.12 _cell.length_b 84.79 _cell.length_c 63.65 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GRT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'B 1 1 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 164.53616 72.22568 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 A CYS 58 1_555 A SG CYS 46 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf2 A SG CYS 73 A CYS 90 1_555 A SG CYS 73 A CYS 90 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5GRT _atom_sites.fract_transf_matrix[1][1] 0.008325 _atom_sites.fract_transf_matrix[1][2] -0.00512 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015711 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 479 479 FAD FAD . C 3 TS4 A 1 17 17 TS4 TS4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 59.34 50.775 20.34 1 6.27 ? PA FAD 479 A 1 HETATM 2 O O1A FAD . . . B 2 59.523 51.965 19.555 1 14.62 ? O1A FAD 479 A 1 HETATM 3 O O2A FAD . . . B 2 59.938 49.532 19.707 1 13.81 ? O2A FAD 479 A 1 HETATM 4 O O5B FAD . . . B 2 57.783 50.523 20.517 1 12.45 ? O5B FAD 479 A 1 HETATM 5 C C5B FAD . . . B 2 56.699 51.407 20.697 1 13.35 ? C5B FAD 479 A 1 HETATM 6 C C4B FAD . . . B 2 55.459 51.028 19.868 1 13.8 ? C4B FAD 479 A 1 HETATM 7 O O4B FAD . . . B 2 54.483 51.937 20.427 1 14.68 ? O4B FAD 479 A 1 HETATM 8 C C3B FAD . . . B 2 55.507 51.251 18.334 1 11.45 ? C3B FAD 479 A 1 HETATM 9 O O3B FAD . . . B 2 55.069 50.221 17.531 1 11.58 ? O3B FAD 479 A 1 HETATM 10 C C2B FAD . . . B 2 54.554 52.379 18.224 1 12.23 ? C2B FAD 479 A 1 HETATM 11 O O2B FAD . . . B 2 53.908 52.34 16.995 1 14.49 ? O2B FAD 479 A 1 HETATM 12 C C1B FAD . . . B 2 53.604 52.215 19.374 1 14.41 ? C1B FAD 479 A 1 HETATM 13 N N9A FAD . . . B 2 52.936 53.432 19.878 1 15.8 ? N9A FAD 479 A 1 HETATM 14 C C8A FAD . . . B 2 53.462 54.659 20.145 1 15.89 ? C8A FAD 479 A 1 HETATM 15 N N7A FAD . . . B 2 52.626 55.511 20.653 1 14.07 ? N7A FAD 479 A 1 HETATM 16 C C5A FAD . . . B 2 51.453 54.763 20.808 1 16.01 ? C5A FAD 479 A 1 HETATM 17 C C6A FAD . . . B 2 50.137 55.094 21.301 1 13.55 ? C6A FAD 479 A 1 HETATM 18 N N6A FAD . . . B 2 49.784 56.237 21.864 1 11.49 ? N6A FAD 479 A 1 HETATM 19 N N1A FAD . . . B 2 49.18 54.161 21.128 1 10.75 ? N1A FAD 479 A 1 HETATM 20 C C2A FAD . . . B 2 49.477 52.971 20.617 1 10.63 ? C2A FAD 479 A 1 HETATM 21 N N3A FAD . . . B 2 50.655 52.534 20.176 1 15.74 ? N3A FAD 479 A 1 HETATM 22 C C4A FAD . . . B 2 51.615 53.516 20.252 1 17.57 ? C4A FAD 479 A 1 HETATM 23 N N1 FAD . . . B 2 68.544 48.847 19.332 1 2 ? N1 FAD 479 A 1 HETATM 24 C C2 FAD . . . B 2 69.311 47.81 19.57 1 2 ? C2 FAD 479 A 1 HETATM 25 O O2 FAD . . . B 2 69.415 47.382 20.639 1 3.66 ? O2 FAD 479 A 1 HETATM 26 N N3 FAD . . . B 2 70.083 47.233 18.628 1 2 ? N3 FAD 479 A 1 HETATM 27 C C4 FAD . . . B 2 70.167 47.672 17.357 1 6.77 ? C4 FAD 479 A 1 HETATM 28 O O4 FAD . . . B 2 70.892 47.102 16.54 1 10.14 ? O4 FAD 479 A 1 HETATM 29 C C4X FAD . . . B 2 69.347 48.882 17.006 1 2 ? C4X FAD 479 A 1 HETATM 30 N N5 FAD . . . B 2 69.376 49.391 15.809 1 2 ? N5 FAD 479 A 1 HETATM 31 C C5X FAD . . . B 2 68.551 50.5 15.545 1 3.57 ? C5X FAD 479 A 1 HETATM 32 C C6 FAD . . . B 2 68.593 51.067 14.26 1 2.73 ? C6 FAD 479 A 1 HETATM 33 C C7 FAD . . . B 2 67.774 52.179 13.916 1 4.87 ? C7 FAD 479 A 1 HETATM 34 C C7M FAD . . . B 2 67.893 52.571 12.979 1 4.78 ? C7M FAD 479 A 1 HETATM 35 C C8 FAD . . . B 2 66.849 52.706 14.951 1 2 ? C8 FAD 479 A 1 HETATM 36 C C8M FAD . . . B 2 66.196 53.431 14.784 1 2 ? C8M FAD 479 A 1 HETATM 37 C C9 FAD . . . B 2 66.848 52.14 16.242 1 2 ? C9 FAD 479 A 1 HETATM 38 C C9A FAD . . . B 2 67.672 51.064 16.582 1 4.16 ? C9A FAD 479 A 1 HETATM 39 N N10 FAD . . . B 2 67.735 50.449 17.906 1 4.02 ? N10 FAD 479 A 1 HETATM 40 C C10 FAD . . . B 2 68.553 49.368 18.132 1 2 ? C10 FAD 479 A 1 HETATM 41 C C1' FAD . . . B 2 66.944 50.91 19.138 1 4.13 ? C1' FAD 479 A 1 HETATM 42 C C2' FAD . . . B 2 65.637 50.084 19.427 1 5.07 ? C2' FAD 479 A 1 HETATM 43 O O2' FAD . . . B 2 64.827 50.159 18.201 1 6.62 ? O2' FAD 479 A 1 HETATM 44 C C3' FAD . . . B 2 64.757 50.79 20.454 1 5.2 ? C3' FAD 479 A 1 HETATM 45 O O3' FAD . . . B 2 65.45 51.216 21.627 1 14.08 ? O3' FAD 479 A 1 HETATM 46 C C4' FAD . . . B 2 63.738 49.882 20.899 1 5.62 ? C4' FAD 479 A 1 HETATM 47 O O4' FAD . . . B 2 62.971 49.883 19.729 1 4.17 ? O4' FAD 479 A 1 HETATM 48 C C5' FAD . . . B 2 63.046 50.494 22.187 1 7.05 ? C5' FAD 479 A 1 HETATM 49 O O5' FAD . . . B 2 61.735 49.956 22.547 1 8.92 ? O5' FAD 479 A 1 HETATM 50 P P FAD . . . B 2 60.423 50.691 23.18 1 9.28 ? P FAD 479 A 1 HETATM 51 O O1P FAD . . . B 2 59.611 49.629 23.84 1 15.44 ? O1P FAD 479 A 1 HETATM 52 O O2P FAD . . . B 2 60.617 51.937 24.045 1 11.17 ? O2P FAD 479 A 1 HETATM 53 O O3P FAD . . . B 2 59.894 51.113 21.753 1 7.14 ? O3P FAD 479 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #