data_5GS0
#
_model_server_result.job_id            7vE6yJIAHCk-1wegX5o-ww 
_model_server_result.datetime_utc      '2024-11-14 17:28:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gs0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":806}' 
#
_entry.id    5GS0 
#
_exptl.entry_id    5GS0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          6 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    34 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.88 
_cell.angle_gamma         90 
_cell.entry_id            5GS0 
_cell.length_a            98.519 
_cell.length_b            141.329 
_cell.length_c            150.831 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GS0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? pentameric 5 author_defined_assembly 1 
? pentameric 5 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 1 1 
D,E,F,I,J,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 L N N 
? 6 M N N 
? 6 N N N 
? 6 O N N 
? 6 P N N 
? 6 Q N N 
? 6 R N N 
? 6 S N N 
? 6 T N N 
? 6 U N N 
? 6 V N N 
? 6 W N N 
? 6 X N N 
? 6 Y N N 
? 6 AA N N 
? 6 BA N N 
? 6 FA N N 
? 6 GA N N 
? 6 HA N N 
? 6 IA N N 
? 6 JA N N 
? 6 KA N N 
? 6 LA N N 
? 6 MA N N 
? 6 NA N N 
? 6 OA N N 
? 6 PA N N 
? 6 QA N N 
? 6 RA N N 
? 6 SA N N 
? 6 TA N N 
? 6 VA N N 
? 6 WA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 69 A CYS 95 1_555 A SG CYS 96 A CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 A SG CYS 623 A CYS 649 1_555 A SG CYS 651 A CYS 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
disulf ? disulf3 B SG CYS 22 C CYS 22 1_555 B SG CYS 87 C CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 C SG CYS 22 D CYS 22 1_555 C SG CYS 99 D CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf5 D SG CYS 69 B CYS 95 1_555 D SG CYS 96 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 D SG CYS 623 B CYS 649 1_555 D SG CYS 651 B CYS 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf7 E SG CYS 22 E CYS 22 1_555 E SG CYS 87 E CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf8 F SG CYS 22 F CYS 22 1_555 F SG CYS 99 F CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf9 G SG CYS 22 X CYS 22 1_555 G SG CYS 96 X CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf10 H SG CYS 23 Y CYS 23 1_555 H SG CYS 88 Y CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf11 I SG CYS 22 H CYS 22 1_555 I SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf12 J SG CYS 23 L CYS 23 1_555 J SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 283 n n 
C1 O1 NAG sing 284 n n 
C1 O5 NAG sing 285 n n 
C1 H1 NAG sing 286 n n 
C2 C3 NAG sing 287 n n 
C2 N2 NAG sing 288 n n 
C2 H2 NAG sing 289 n n 
C3 C4 NAG sing 290 n n 
C3 O3 NAG sing 291 n n 
C3 H3 NAG sing 292 n n 
C4 C5 NAG sing 293 n n 
C4 O4 NAG sing 294 n n 
C4 H4 NAG sing 295 n n 
C5 C6 NAG sing 296 n n 
C5 O5 NAG sing 297 n n 
C5 H5 NAG sing 298 n n 
C6 O6 NAG sing 299 n n 
C6 H61 NAG sing 300 n n 
C6 H62 NAG sing 301 n n 
C7 C8 NAG sing 302 n n 
C7 N2 NAG sing 303 n n 
C7 O7 NAG doub 304 n n 
C8 H81 NAG sing 305 n n 
C8 H82 NAG sing 306 n n 
C8 H83 NAG sing 307 n n 
N2 HN2 NAG sing 308 n n 
O1 HO1 NAG sing 309 n n 
O3 HO3 NAG sing 310 n n 
O4 HO4 NAG sing 311 n n 
O6 HO6 NAG sing 312 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5GS0 
_atom_sites.fract_transf_matrix[1][1]    0.01015 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003081 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007076 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006929 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 6 NAG A 1 801 801 NAG NAG . 
L 6 NAG A 1 802 802 NAG NAG . 
M 6 NAG A 1 803 803 NAG NAG . 
N 6 NAG A 1 804 804 NAG NAG . 
O 6 NAG A 1 805 805 NAG NAG . 
P 6 NAG A 1 806 806 NAG NAG . 
Q 6 NAG A 1 807 807 NAG NAG . 
R 6 NAG A 1 808 808 NAG NAG . 
S 6 NAG A 1 809 809 NAG NAG . 
T 6 NAG A 1 810 810 NAG NAG . 
U 6 NAG A 1 811 811 NAG NAG . 
V 6 NAG A 1 812 812 NAG NAG . 
W 6 NAG A 1 813 813 NAG NAG . 
X 6 NAG A 1 814 814 NAG NAG . 
Y 6 NAG A 1 815 815 NAG NAG . 
Z 7 BMA A 1 816 816 BMA BMA . 
AA 6 NAG A 1 817 818 NAG NAG . 
BA 6 NAG A 1 818 819 NAG NAG . 
CA 7 BMA A 1 819 820 BMA BMA . 
DA 8 MAN A 1 820 817 MAN MAN . 
EA 8 MAN B 1 701 817 MAN MAN . 
FA 6 NAG B 1 702 801 NAG NAG . 
GA 6 NAG B 1 703 802 NAG NAG . 
HA 6 NAG B 1 704 803 NAG NAG . 
IA 6 NAG B 1 705 804 NAG NAG . 
JA 6 NAG B 1 706 805 NAG NAG . 
KA 6 NAG B 1 707 806 NAG NAG . 
LA 6 NAG B 1 708 807 NAG NAG . 
MA 6 NAG B 1 709 808 NAG NAG . 
NA 6 NAG B 1 710 809 NAG NAG . 
OA 6 NAG B 1 711 810 NAG NAG . 
PA 6 NAG B 1 712 811 NAG NAG . 
QA 6 NAG B 1 713 812 NAG NAG . 
RA 6 NAG B 1 714 813 NAG NAG . 
SA 6 NAG B 1 715 814 NAG NAG . 
TA 6 NAG B 1 716 815 NAG NAG . 
UA 7 BMA B 1 717 816 BMA BMA . 
VA 6 NAG B 1 718 818 NAG NAG . 
WA 6 NAG B 1 719 819 NAG NAG . 
XA 7 BMA B 1 720 820 BMA BMA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . P 6 -24.293 15.252 -4.482 1 124.44 ? C1 NAG 806 A 1 
HETATM 2 C C2 NAG . . . P 6 -23.023 15.597 -5.358 1 143.23 ? C2 NAG 806 A 1 
HETATM 3 C C3 NAG . . . P 6 -23.211 15.295 -6.884 1 147.49 ? C3 NAG 806 A 1 
HETATM 4 C C4 NAG . . . P 6 -24.199 14.182 -7.205 1 141.21 ? C4 NAG 806 A 1 
HETATM 5 C C5 NAG . . . P 6 -25.407 14.317 -6.305 1 129.64 ? C5 NAG 806 A 1 
HETATM 6 C C6 NAG . . . P 6 -26.473 13.277 -6.551 1 125.37 ? C6 NAG 806 A 1 
HETATM 7 C C7 NAG . . . P 6 -23.003 17.908 -4.289 1 138.25 ? C7 NAG 806 A 1 
HETATM 8 C C8 NAG . . . P 6 -22.403 19.275 -4.448 1 129.52 ? C8 NAG 806 A 1 
HETATM 9 N N2 NAG . . . P 6 -22.6 16.994 -5.197 1 147.16 ? N2 NAG 806 A 1 
HETATM 10 O O1 NAG . . . P 6 -23.91 14.952 -3.177 1 106.69 ? O1 NAG 806 A 1 
HETATM 11 O O3 NAG . . . P 6 -21.965 14.98 -7.504 1 147.07 ? O3 NAG 806 A 1 
HETATM 12 O O4 NAG . . . P 6 -24.554 14.251 -8.586 1 138.88 ? O4 NAG 806 A 1 
HETATM 13 O O5 NAG . . . P 6 -24.932 14.128 -4.975 1 124.86 ? O5 NAG 806 A 1 
HETATM 14 O O6 NAG . . . P 6 -27.756 13.88 -6.589 1 120.03 ? O6 NAG 806 A 1 
HETATM 15 O O7 NAG . . . P 6 -23.779 17.654 -3.37 1 137.74 ? O7 NAG 806 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           346 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#