data_5GS4 # _model_server_result.job_id Y9bnsM2oLfOh46M9wyr0AQ _model_server_result.datetime_utc '2024-12-02 12:04:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gs4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 5GS4 # _exptl.entry_id 5GS4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5GS4 _cell.length_a 57.272 _cell.length_b 61.246 _cell.length_c 69.385 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GS4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ARG 1 B ARG 1 1_555 B N IAS 2 B IAS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? covale ? covale2 B C IAS 2 B IAS 2 1_555 B NG DNP 5 B DNP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.488 ? covale ? covale3 B CG IAS 2 B IAS 2 1_555 B N ILE 3 B ILE 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale4 B C LEU 4 B LEU 4 1_555 B N DNP 5 B DNP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale5 B C DNP 5 B DNP 5 1_555 B N ARG 6 B ARG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.508 ? covale ? covale6 B C GLN 9 B GLN 9 1_555 B N NH2 10 B NH2 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5GS4 _atom_sites.fract_transf_matrix[1][1] 0.017461 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016327 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014412 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 601 1 PO4 PO4 . D 3 PO4 A 1 602 2 PO4 PO4 . E 4 EST A 1 603 1 EST EST . F 5 HOH A 1 701 78 HOH HOH . F 5 HOH A 2 702 38 HOH HOH . F 5 HOH A 3 703 10 HOH HOH . F 5 HOH A 4 704 63 HOH HOH . F 5 HOH A 5 705 31 HOH HOH . F 5 HOH A 6 706 53 HOH HOH . F 5 HOH A 7 707 43 HOH HOH . F 5 HOH A 8 708 2 HOH HOH . F 5 HOH A 9 709 28 HOH HOH . F 5 HOH A 10 710 46 HOH HOH . F 5 HOH A 11 711 41 HOH HOH . F 5 HOH A 12 712 1 HOH HOH . F 5 HOH A 13 713 37 HOH HOH . F 5 HOH A 14 714 11 HOH HOH . F 5 HOH A 15 715 5 HOH HOH . F 5 HOH A 16 716 45 HOH HOH . F 5 HOH A 17 717 6 HOH HOH . F 5 HOH A 18 718 51 HOH HOH . F 5 HOH A 19 719 42 HOH HOH . F 5 HOH A 20 720 3 HOH HOH . F 5 HOH A 21 721 40 HOH HOH . F 5 HOH A 22 722 27 HOH HOH . F 5 HOH A 23 723 72 HOH HOH . F 5 HOH A 24 724 20 HOH HOH . F 5 HOH A 25 725 52 HOH HOH . F 5 HOH A 26 726 23 HOH HOH . F 5 HOH A 27 727 8 HOH HOH . F 5 HOH A 28 728 14 HOH HOH . F 5 HOH A 29 729 48 HOH HOH . F 5 HOH A 30 730 19 HOH HOH . F 5 HOH A 31 731 44 HOH HOH . F 5 HOH A 32 732 33 HOH HOH . F 5 HOH A 33 733 16 HOH HOH . F 5 HOH A 34 734 58 HOH HOH . F 5 HOH A 35 735 47 HOH HOH . F 5 HOH A 36 736 22 HOH HOH . F 5 HOH A 37 737 9 HOH HOH . F 5 HOH A 38 738 77 HOH HOH . F 5 HOH A 39 739 13 HOH HOH . F 5 HOH A 40 740 7 HOH HOH . F 5 HOH A 41 741 24 HOH HOH . F 5 HOH A 42 742 35 HOH HOH . F 5 HOH A 43 743 25 HOH HOH . F 5 HOH A 44 744 79 HOH HOH . F 5 HOH A 45 745 61 HOH HOH . F 5 HOH A 46 746 4 HOH HOH . F 5 HOH A 47 747 49 HOH HOH . F 5 HOH A 48 748 15 HOH HOH . F 5 HOH A 49 749 64 HOH HOH . F 5 HOH A 50 750 30 HOH HOH . F 5 HOH A 51 751 55 HOH HOH . F 5 HOH A 52 752 71 HOH HOH . F 5 HOH A 53 753 21 HOH HOH . F 5 HOH A 54 754 70 HOH HOH . F 5 HOH A 55 755 68 HOH HOH . F 5 HOH A 56 756 57 HOH HOH . F 5 HOH A 57 757 34 HOH HOH . F 5 HOH A 58 758 12 HOH HOH . F 5 HOH A 59 759 50 HOH HOH . F 5 HOH A 60 760 65 HOH HOH . F 5 HOH A 61 761 18 HOH HOH . F 5 HOH A 62 762 59 HOH HOH . F 5 HOH A 63 763 66 HOH HOH . F 5 HOH A 64 764 56 HOH HOH . F 5 HOH A 65 765 32 HOH HOH . F 5 HOH A 66 766 74 HOH HOH . F 5 HOH A 67 767 83 HOH HOH . F 5 HOH A 68 768 39 HOH HOH . F 5 HOH A 69 769 54 HOH HOH . F 5 HOH A 70 770 26 HOH HOH . F 5 HOH A 71 771 62 HOH HOH . F 5 HOH A 72 772 73 HOH HOH . F 5 HOH A 73 773 36 HOH HOH . F 5 HOH A 74 774 81 HOH HOH . F 5 HOH A 75 775 69 HOH HOH . F 5 HOH A 76 776 67 HOH HOH . F 5 HOH A 77 777 17 HOH HOH . F 5 HOH A 78 778 76 HOH HOH . F 5 HOH A 79 779 60 HOH HOH . F 5 HOH A 80 780 29 HOH HOH . F 5 HOH A 81 781 82 HOH HOH . F 5 HOH A 82 782 75 HOH HOH . G 5 HOH B 1 101 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 3 -19.398 -24.497 16.366 1 61.27 ? P PO4 602 A 1 HETATM 2 O O1 PO4 . . . D 3 -20.128 -23.534 15.452 1 47.69 ? O1 PO4 602 A 1 HETATM 3 O O2 PO4 . . . D 3 -18.022 -23.944 16.665 1 48.41 ? O2 PO4 602 A 1 HETATM 4 O O3 PO4 . . . D 3 -19.262 -25.836 15.669 1 51.31 -1 O3 PO4 602 A 1 HETATM 5 O O4 PO4 . . . D 3 -20.188 -24.647 17.654 1 62.71 ? O4 PO4 602 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #