data_5GSP # _model_server_result.job_id z4wlAKmod_deAukNVOobsA _model_server_result.datetime_utc '2024-10-15 02:21:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gsp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":105}' # _entry.id 5GSP # _exptl.entry_id 5GSP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-3'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5GSP _cell.length_a 48.23 _cell.length_b 51.09 _cell.length_c 40.53 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GSP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 10 A CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 6 A CYS 6 1_555 A SG CYS 103 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A OD2 ASP 15 A ASP 15 1_555 B CA CA . A CA 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc2 A OD1 ASP 15 A ASP 15 1_555 B CA CA . A CA 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc3 B CA CA . A CA 107 1_555 D O HOH . A HOH 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc4 B CA CA . A CA 107 1_555 D O HOH . A HOH 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc5 B CA CA . A CA 107 1_555 D O HOH . A HOH 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.055 ? metalc ? metalc6 B CA CA . A CA 107 1_555 D O HOH . A HOH 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc7 B CA CA . A CA 107 1_555 D O HOH . A HOH 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 3GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-3'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5GSP _atom_sites.fract_transf_matrix[1][1] 0.020734 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024673 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 107 107 CA CA . C 3 3GP A 1 105 105 3GP 3GP . D 4 HOH A 1 108 108 HOH HOH . D 4 HOH A 2 109 109 HOH HOH . D 4 HOH A 3 110 110 HOH HOH . D 4 HOH A 4 111 111 HOH HOH . D 4 HOH A 5 112 112 HOH HOH . D 4 HOH A 6 113 113 HOH HOH . D 4 HOH A 7 114 114 HOH HOH . D 4 HOH A 8 115 115 HOH HOH . D 4 HOH A 9 116 116 HOH HOH . D 4 HOH A 10 117 117 HOH HOH . D 4 HOH A 11 118 118 HOH HOH . D 4 HOH A 12 119 119 HOH HOH . D 4 HOH A 13 120 120 HOH HOH . D 4 HOH A 14 121 121 HOH HOH . D 4 HOH A 15 122 122 HOH HOH . D 4 HOH A 16 123 123 HOH HOH . D 4 HOH A 17 124 124 HOH HOH . D 4 HOH A 18 125 125 HOH HOH . D 4 HOH A 19 126 126 HOH HOH . D 4 HOH A 20 127 127 HOH HOH . D 4 HOH A 21 128 128 HOH HOH . D 4 HOH A 22 129 129 HOH HOH . D 4 HOH A 23 130 130 HOH HOH . D 4 HOH A 24 131 131 HOH HOH . D 4 HOH A 25 132 132 HOH HOH . D 4 HOH A 26 133 133 HOH HOH . D 4 HOH A 27 134 134 HOH HOH . D 4 HOH A 28 135 135 HOH HOH . D 4 HOH A 29 136 136 HOH HOH . D 4 HOH A 30 137 137 HOH HOH . D 4 HOH A 31 138 138 HOH HOH . D 4 HOH A 32 139 139 HOH HOH . D 4 HOH A 33 140 140 HOH HOH . D 4 HOH A 34 141 141 HOH HOH . D 4 HOH A 35 142 142 HOH HOH . D 4 HOH A 36 143 143 HOH HOH . D 4 HOH A 37 144 144 HOH HOH . D 4 HOH A 38 145 145 HOH HOH . D 4 HOH A 39 146 146 HOH HOH . D 4 HOH A 40 147 147 HOH HOH . D 4 HOH A 41 148 148 HOH HOH . D 4 HOH A 42 149 149 HOH HOH . D 4 HOH A 43 150 150 HOH HOH . D 4 HOH A 44 151 151 HOH HOH . D 4 HOH A 45 152 152 HOH HOH . D 4 HOH A 46 153 153 HOH HOH . D 4 HOH A 47 154 154 HOH HOH . D 4 HOH A 48 155 155 HOH HOH . D 4 HOH A 49 156 156 HOH HOH . D 4 HOH A 50 157 157 HOH HOH . D 4 HOH A 51 158 158 HOH HOH . D 4 HOH A 52 159 159 HOH HOH . D 4 HOH A 53 160 160 HOH HOH . D 4 HOH A 54 161 161 HOH HOH . D 4 HOH A 55 162 162 HOH HOH . D 4 HOH A 56 163 163 HOH HOH . D 4 HOH A 57 164 164 HOH HOH . D 4 HOH A 58 165 165 HOH HOH . D 4 HOH A 59 166 166 HOH HOH . D 4 HOH A 60 167 167 HOH HOH . D 4 HOH A 61 168 168 HOH HOH . D 4 HOH A 62 169 169 HOH HOH . D 4 HOH A 63 170 170 HOH HOH . D 4 HOH A 64 171 171 HOH HOH . D 4 HOH A 65 172 172 HOH HOH . D 4 HOH A 66 173 173 HOH HOH . D 4 HOH A 67 174 174 HOH HOH . D 4 HOH A 68 175 175 HOH HOH . D 4 HOH A 69 176 176 HOH HOH . D 4 HOH A 70 177 177 HOH HOH . D 4 HOH A 71 178 178 HOH HOH . D 4 HOH A 72 179 179 HOH HOH . D 4 HOH A 73 180 180 HOH HOH . D 4 HOH A 74 181 181 HOH HOH . D 4 HOH A 75 182 182 HOH HOH . D 4 HOH A 76 183 183 HOH HOH . D 4 HOH A 77 184 184 HOH HOH . D 4 HOH A 78 185 185 HOH HOH . D 4 HOH A 79 186 186 HOH HOH . D 4 HOH A 80 187 187 HOH HOH . D 4 HOH A 81 188 188 HOH HOH . D 4 HOH A 82 189 189 HOH HOH . D 4 HOH A 83 190 190 HOH HOH . D 4 HOH A 84 191 191 HOH HOH . D 4 HOH A 85 192 192 HOH HOH . D 4 HOH A 86 193 193 HOH HOH . D 4 HOH A 87 194 194 HOH HOH . D 4 HOH A 88 195 195 HOH HOH . D 4 HOH A 89 196 196 HOH HOH . D 4 HOH A 90 197 197 HOH HOH . D 4 HOH A 91 198 198 HOH HOH . D 4 HOH A 92 199 199 HOH HOH . D 4 HOH A 93 200 200 HOH HOH . D 4 HOH A 94 201 201 HOH HOH . D 4 HOH A 95 202 202 HOH HOH . D 4 HOH A 96 203 203 HOH HOH . D 4 HOH A 97 204 204 HOH HOH . D 4 HOH A 98 205 205 HOH HOH . D 4 HOH A 99 206 206 HOH HOH . D 4 HOH A 100 207 207 HOH HOH . D 4 HOH A 101 208 208 HOH HOH . D 4 HOH A 102 209 209 HOH HOH . D 4 HOH A 103 210 210 HOH HOH . D 4 HOH A 104 211 211 HOH HOH . D 4 HOH A 105 212 212 HOH HOH . D 4 HOH A 106 213 213 HOH HOH . D 4 HOH A 107 214 214 HOH HOH . D 4 HOH A 108 215 215 HOH HOH . D 4 HOH A 109 216 216 HOH HOH . D 4 HOH A 110 217 217 HOH HOH . D 4 HOH A 111 218 218 HOH HOH . D 4 HOH A 112 219 219 HOH HOH . D 4 HOH A 113 220 220 HOH HOH . D 4 HOH A 114 221 221 HOH HOH . D 4 HOH A 115 222 222 HOH HOH . D 4 HOH A 116 223 223 HOH HOH . D 4 HOH A 117 224 224 HOH HOH . D 4 HOH A 118 225 225 HOH HOH . D 4 HOH A 119 226 226 HOH HOH . D 4 HOH A 120 227 227 HOH HOH . D 4 HOH A 121 228 228 HOH HOH . D 4 HOH A 122 229 229 HOH HOH . D 4 HOH A 123 230 230 HOH HOH . D 4 HOH A 124 231 231 HOH HOH . D 4 HOH A 125 232 232 HOH HOH . D 4 HOH A 126 233 233 HOH HOH . D 4 HOH A 127 234 234 HOH HOH . D 4 HOH A 128 235 235 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 3GP . A . C 3 21.056 37.947 19.456 0.45 31.49 ? P 3GP 105 A 1 HETATM 2 P P 3GP . B . C 3 23.708 35.409 19.9 0.49 25.49 ? P 3GP 105 A 1 HETATM 3 O O1P 3GP . A . C 3 22.156 37.768 18.523 0.45 30.1 ? O1P 3GP 105 A 1 HETATM 4 O O1P 3GP . B . C 3 24.541 34.23 19.621 0.49 27.51 ? O1P 3GP 105 A 1 HETATM 5 O O2P 3GP . A . C 3 21.275 39.006 20.465 0.45 31.46 ? O2P 3GP 105 A 1 HETATM 6 O O2P 3GP . B . C 3 24.216 36.275 20.986 0.49 27.76 ? O2P 3GP 105 A 1 HETATM 7 O O3P 3GP . A . C 3 19.72 37.919 18.838 0.45 31.95 ? O3P 3GP 105 A 1 HETATM 8 O O3P 3GP . B . C 3 23.255 36.119 18.688 0.49 27.71 ? O3P 3GP 105 A 1 HETATM 9 O O5' 3GP . A . C 3 20.086 37.268 23.189 0.45 33.34 ? O5' 3GP 105 A 1 HETATM 10 O O5' 3GP . B . C 3 20.319 37.846 22.464 0.49 33.06 ? O5' 3GP 105 A 1 HETATM 11 C C5' 3GP . A . C 3 20.105 35.848 23.375 0.45 28.85 ? C5' 3GP 105 A 1 HETATM 12 C C5' 3GP . B . C 3 19.902 36.532 22.845 0.49 27.9 ? C5' 3GP 105 A 1 HETATM 13 C C4' 3GP . A . C 3 20.62 35.137 22.134 0.45 28.9 ? C4' 3GP 105 A 1 HETATM 14 C C4' 3GP . B . C 3 20.862 35.416 22.36 0.49 27.14 ? C4' 3GP 105 A 1 HETATM 15 O O4' 3GP . A . C 3 20.155 33.775 22.123 0.45 26.89 ? O4' 3GP 105 A 1 HETATM 16 O O4' 3GP . B . C 3 20.18 34.134 22.41 0.49 24.99 ? O4' 3GP 105 A 1 HETATM 17 C C3' 3GP . A . C 3 20.085 35.842 20.899 0.45 28.93 ? C3' 3GP 105 A 1 HETATM 18 C C3' 3GP . B . C 3 21.227 35.597 20.886 0.49 27.15 ? C3' 3GP 105 A 1 HETATM 19 O O3' 3GP . A . C 3 21.163 36.572 20.294 0.45 30.56 ? O3' 3GP 105 A 1 HETATM 20 O O3' 3GP . B . C 3 22.368 34.777 20.525 0.49 26.88 ? O3' 3GP 105 A 1 HETATM 21 C C2' 3GP . A . C 3 19.589 34.733 20.028 0.45 27.85 ? C2' 3GP 105 A 1 HETATM 22 C C2' 3GP . B . C 3 19.962 35.036 20.275 0.49 25.5 ? C2' 3GP 105 A 1 HETATM 23 O O2' 3GP . A . C 3 20.445 34.486 18.942 0.45 29.97 ? O2' 3GP 105 A 1 HETATM 24 O O2' 3GP . B . C 3 20.193 34.741 18.909 0.49 28.21 ? O2' 3GP 105 A 1 HETATM 25 C C1' 3GP . A . C 3 19.551 33.477 20.857 0.45 25.38 ? C1' 3GP 105 A 1 HETATM 26 C C1' 3GP . B . C 3 19.766 33.765 21.076 0.49 23.33 ? C1' 3GP 105 A 1 HETATM 27 N N9 3GP . A . C 3 18.121 33.089 20.904 0.45 21.92 ? N9 3GP 105 A 1 HETATM 28 N N9 3GP . B . C 3 18.333 33.338 20.983 0.49 19.81 ? N9 3GP 105 A 1 HETATM 29 C C8 3GP . A . C 3 17.545 31.985 20.328 0.45 19.96 ? C8 3GP 105 A 1 HETATM 30 C C8 3GP . B . C 3 17.836 32.22 20.35 0.49 17.89 ? C8 3GP 105 A 1 HETATM 31 N N7 3GP . A . C 3 16.258 31.921 20.468 0.45 18.11 ? N7 3GP 105 A 1 HETATM 32 N N7 3GP . B . C 3 16.544 32.08 20.425 0.49 16.07 ? N7 3GP 105 A 1 HETATM 33 C C5 3GP . A . C 3 15.951 33.068 21.194 0.45 19.15 ? C5 3GP 105 A 1 HETATM 34 C C5 3GP . B . C 3 16.143 33.191 21.166 0.49 16.87 ? C5 3GP 105 A 1 HETATM 35 C C6 3GP . A . C 3 14.7 33.545 21.647 0.45 18.03 ? C6 3GP 105 A 1 HETATM 36 C C6 3GP . B . C 3 14.841 33.592 21.579 0.49 16.05 ? C6 3GP 105 A 1 HETATM 37 O O6 3GP . A . C 3 13.632 32.991 21.45 0.45 17.75 ? O6 3GP 105 A 1 HETATM 38 O O6 3GP . B . C 3 13.805 32.992 21.33 0.49 14.9 ? O6 3GP 105 A 1 HETATM 39 N N1 3GP . A . C 3 14.786 34.738 22.343 0.45 17.76 ? N1 3GP 105 A 1 HETATM 40 N N1 3GP . B . C 3 14.838 34.771 22.306 0.49 15.43 ? N1 3GP 105 A 1 HETATM 41 C C2 3GP . A . C 3 15.967 35.409 22.578 0.45 19.34 ? C2 3GP 105 A 1 HETATM 42 C C2 3GP . B . C 3 15.981 35.491 22.603 0.49 18.13 ? C2 3GP 105 A 1 HETATM 43 N N2 3GP . A . C 3 15.87 36.551 23.261 0.45 19.63 ? N2 3GP 105 A 1 HETATM 44 N N2 3GP . B . C 3 15.805 36.609 23.311 0.49 18.21 ? N2 3GP 105 A 1 HETATM 45 N N3 3GP . A . C 3 17.162 34.968 22.155 0.45 19.19 ? N3 3GP 105 A 1 HETATM 46 N N3 3GP . B . C 3 17.218 35.121 22.221 0.49 17.3 ? N3 3GP 105 A 1 HETATM 47 C C4 3GP . A . C 3 17.079 33.793 21.471 0.45 19.59 ? C4 3GP 105 A 1 HETATM 48 C C4 3GP . B . C 3 17.225 33.967 21.509 0.49 17.8 ? C4 3GP 105 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 546 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #