data_5GSP # _model_server_result.job_id ZqdJ6tAF-65OCHtuJolZdg _model_server_result.datetime_utc '2024-11-25 00:34:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gsp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":107}' # _entry.id 5GSP # _exptl.entry_id 5GSP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5GSP _cell.length_a 48.23 _cell.length_b 51.09 _cell.length_c 40.53 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GSP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 10 A CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 6 A CYS 6 1_555 A SG CYS 103 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A OD2 ASP 15 A ASP 15 1_555 B CA CA . A CA 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc2 A OD1 ASP 15 A ASP 15 1_555 B CA CA . A CA 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc3 B CA CA . A CA 107 1_555 D O HOH . A HOH 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc4 B CA CA . A CA 107 1_555 D O HOH . A HOH 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc5 B CA CA . A CA 107 1_555 D O HOH . A HOH 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.055 ? metalc ? metalc6 B CA CA . A CA 107 1_555 D O HOH . A HOH 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc7 B CA CA . A CA 107 1_555 D O HOH . A HOH 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5GSP _atom_sites.fract_transf_matrix[1][1] 0.020734 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024673 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 107 107 CA CA . C 3 3GP A 1 105 105 3GP 3GP . D 4 HOH A 1 108 108 HOH HOH . D 4 HOH A 2 109 109 HOH HOH . D 4 HOH A 3 110 110 HOH HOH . D 4 HOH A 4 111 111 HOH HOH . D 4 HOH A 5 112 112 HOH HOH . D 4 HOH A 6 113 113 HOH HOH . D 4 HOH A 7 114 114 HOH HOH . D 4 HOH A 8 115 115 HOH HOH . D 4 HOH A 9 116 116 HOH HOH . D 4 HOH A 10 117 117 HOH HOH . D 4 HOH A 11 118 118 HOH HOH . D 4 HOH A 12 119 119 HOH HOH . D 4 HOH A 13 120 120 HOH HOH . D 4 HOH A 14 121 121 HOH HOH . D 4 HOH A 15 122 122 HOH HOH . D 4 HOH A 16 123 123 HOH HOH . D 4 HOH A 17 124 124 HOH HOH . D 4 HOH A 18 125 125 HOH HOH . D 4 HOH A 19 126 126 HOH HOH . D 4 HOH A 20 127 127 HOH HOH . D 4 HOH A 21 128 128 HOH HOH . D 4 HOH A 22 129 129 HOH HOH . D 4 HOH A 23 130 130 HOH HOH . D 4 HOH A 24 131 131 HOH HOH . D 4 HOH A 25 132 132 HOH HOH . D 4 HOH A 26 133 133 HOH HOH . D 4 HOH A 27 134 134 HOH HOH . D 4 HOH A 28 135 135 HOH HOH . D 4 HOH A 29 136 136 HOH HOH . D 4 HOH A 30 137 137 HOH HOH . D 4 HOH A 31 138 138 HOH HOH . D 4 HOH A 32 139 139 HOH HOH . D 4 HOH A 33 140 140 HOH HOH . D 4 HOH A 34 141 141 HOH HOH . D 4 HOH A 35 142 142 HOH HOH . D 4 HOH A 36 143 143 HOH HOH . D 4 HOH A 37 144 144 HOH HOH . D 4 HOH A 38 145 145 HOH HOH . D 4 HOH A 39 146 146 HOH HOH . D 4 HOH A 40 147 147 HOH HOH . D 4 HOH A 41 148 148 HOH HOH . D 4 HOH A 42 149 149 HOH HOH . D 4 HOH A 43 150 150 HOH HOH . D 4 HOH A 44 151 151 HOH HOH . D 4 HOH A 45 152 152 HOH HOH . D 4 HOH A 46 153 153 HOH HOH . D 4 HOH A 47 154 154 HOH HOH . D 4 HOH A 48 155 155 HOH HOH . D 4 HOH A 49 156 156 HOH HOH . D 4 HOH A 50 157 157 HOH HOH . D 4 HOH A 51 158 158 HOH HOH . D 4 HOH A 52 159 159 HOH HOH . D 4 HOH A 53 160 160 HOH HOH . D 4 HOH A 54 161 161 HOH HOH . D 4 HOH A 55 162 162 HOH HOH . D 4 HOH A 56 163 163 HOH HOH . D 4 HOH A 57 164 164 HOH HOH . D 4 HOH A 58 165 165 HOH HOH . D 4 HOH A 59 166 166 HOH HOH . D 4 HOH A 60 167 167 HOH HOH . D 4 HOH A 61 168 168 HOH HOH . D 4 HOH A 62 169 169 HOH HOH . D 4 HOH A 63 170 170 HOH HOH . D 4 HOH A 64 171 171 HOH HOH . D 4 HOH A 65 172 172 HOH HOH . D 4 HOH A 66 173 173 HOH HOH . D 4 HOH A 67 174 174 HOH HOH . D 4 HOH A 68 175 175 HOH HOH . D 4 HOH A 69 176 176 HOH HOH . D 4 HOH A 70 177 177 HOH HOH . D 4 HOH A 71 178 178 HOH HOH . D 4 HOH A 72 179 179 HOH HOH . D 4 HOH A 73 180 180 HOH HOH . D 4 HOH A 74 181 181 HOH HOH . D 4 HOH A 75 182 182 HOH HOH . D 4 HOH A 76 183 183 HOH HOH . D 4 HOH A 77 184 184 HOH HOH . D 4 HOH A 78 185 185 HOH HOH . D 4 HOH A 79 186 186 HOH HOH . D 4 HOH A 80 187 187 HOH HOH . D 4 HOH A 81 188 188 HOH HOH . D 4 HOH A 82 189 189 HOH HOH . D 4 HOH A 83 190 190 HOH HOH . D 4 HOH A 84 191 191 HOH HOH . D 4 HOH A 85 192 192 HOH HOH . D 4 HOH A 86 193 193 HOH HOH . D 4 HOH A 87 194 194 HOH HOH . D 4 HOH A 88 195 195 HOH HOH . D 4 HOH A 89 196 196 HOH HOH . D 4 HOH A 90 197 197 HOH HOH . D 4 HOH A 91 198 198 HOH HOH . D 4 HOH A 92 199 199 HOH HOH . D 4 HOH A 93 200 200 HOH HOH . D 4 HOH A 94 201 201 HOH HOH . D 4 HOH A 95 202 202 HOH HOH . D 4 HOH A 96 203 203 HOH HOH . D 4 HOH A 97 204 204 HOH HOH . D 4 HOH A 98 205 205 HOH HOH . D 4 HOH A 99 206 206 HOH HOH . D 4 HOH A 100 207 207 HOH HOH . D 4 HOH A 101 208 208 HOH HOH . D 4 HOH A 102 209 209 HOH HOH . D 4 HOH A 103 210 210 HOH HOH . D 4 HOH A 104 211 211 HOH HOH . D 4 HOH A 105 212 212 HOH HOH . D 4 HOH A 106 213 213 HOH HOH . D 4 HOH A 107 214 214 HOH HOH . D 4 HOH A 108 215 215 HOH HOH . D 4 HOH A 109 216 216 HOH HOH . D 4 HOH A 110 217 217 HOH HOH . D 4 HOH A 111 218 218 HOH HOH . D 4 HOH A 112 219 219 HOH HOH . D 4 HOH A 113 220 220 HOH HOH . D 4 HOH A 114 221 221 HOH HOH . D 4 HOH A 115 222 222 HOH HOH . D 4 HOH A 116 223 223 HOH HOH . D 4 HOH A 117 224 224 HOH HOH . D 4 HOH A 118 225 225 HOH HOH . D 4 HOH A 119 226 226 HOH HOH . D 4 HOH A 120 227 227 HOH HOH . D 4 HOH A 121 228 228 HOH HOH . D 4 HOH A 122 229 229 HOH HOH . D 4 HOH A 123 230 230 HOH HOH . D 4 HOH A 124 231 231 HOH HOH . D 4 HOH A 125 232 232 HOH HOH . D 4 HOH A 126 233 233 HOH HOH . D 4 HOH A 127 234 234 HOH HOH . D 4 HOH A 128 235 235 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 15.418 _atom_site.Cartn_y 51.053 _atom_site.Cartn_z 3.328 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 61.89 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 107 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #