data_5GSS # _model_server_result.job_id HLLEnnBqOGcAilJfaFql1A _model_server_result.datetime_utc '2024-10-12 20:21:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gss # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":210}' # _entry.id 5GSS # _exptl.entry_id 5GSS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97 _cell.angle_gamma 90 _cell.entry_id 5GSS _cell.length_a 78.336 _cell.length_b 89.228 _cell.length_c 68.728 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GSS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GSH sing 129 n n N1 HN11 GSH sing 130 n n N1 HN12 GSH sing 131 n n CA1 C1 GSH sing 132 n n CA1 CB1 GSH sing 133 n n CA1 HA1 GSH sing 134 n n C1 O11 GSH doub 135 n n C1 O12 GSH sing 136 n n O12 H12 GSH sing 137 n n CB1 CG1 GSH sing 138 n n CB1 HB12 GSH sing 139 n n CB1 HB13 GSH sing 140 n n CG1 CD1 GSH sing 141 n n CG1 HG12 GSH sing 142 n n CG1 HG13 GSH sing 143 n n CD1 OE1 GSH doub 144 n n CD1 N2 GSH sing 145 n n N2 CA2 GSH sing 146 n n N2 HN2 GSH sing 147 n n CA2 C2 GSH sing 148 n n CA2 CB2 GSH sing 149 n n CA2 HA2 GSH sing 150 n n C2 O2 GSH doub 151 n n C2 N3 GSH sing 152 n n CB2 SG2 GSH sing 153 n n CB2 HB22 GSH sing 154 n n CB2 HB23 GSH sing 155 n n SG2 HSG GSH sing 156 n n N3 CA3 GSH sing 157 n n N3 HN3 GSH sing 158 n n CA3 C3 GSH sing 159 n n CA3 HA31 GSH sing 160 n n CA3 HA32 GSH sing 161 n n C3 O31 GSH doub 162 n n C3 O32 GSH sing 163 n n O32 H32 GSH sing 164 n n # _atom_sites.entry_id 5GSS _atom_sites.fract_transf_matrix[1][1] 0.012766 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001567 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014659 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GSH A 1 210 1 GSH GTT . D 3 MES A 1 211 1 MES MES . E 3 MES A 1 212 2 MES MES . F 2 GSH B 1 210 1 GSH GTT . G 3 MES B 1 211 1 MES MES . H 4 HOH A 1 213 1 HOH HOH . H 4 HOH A 2 214 3 HOH HOH . H 4 HOH A 3 215 6 HOH HOH . H 4 HOH A 4 216 8 HOH HOH . H 4 HOH A 5 217 9 HOH HOH . H 4 HOH A 6 218 11 HOH HOH . H 4 HOH A 7 219 12 HOH HOH . H 4 HOH A 8 220 14 HOH HOH . H 4 HOH A 9 221 18 HOH HOH . H 4 HOH A 10 222 19 HOH HOH . H 4 HOH A 11 223 20 HOH HOH . H 4 HOH A 12 224 21 HOH HOH . H 4 HOH A 13 225 23 HOH HOH . H 4 HOH A 14 226 25 HOH HOH . H 4 HOH A 15 227 26 HOH HOH . H 4 HOH A 16 228 27 HOH HOH . H 4 HOH A 17 229 28 HOH HOH . H 4 HOH A 18 230 31 HOH HOH . H 4 HOH A 19 231 32 HOH HOH . H 4 HOH A 20 232 37 HOH HOH . H 4 HOH A 21 233 39 HOH HOH . H 4 HOH A 22 234 40 HOH HOH . H 4 HOH A 23 235 45 HOH HOH . H 4 HOH A 24 236 47 HOH HOH . H 4 HOH A 25 237 49 HOH HOH . H 4 HOH A 26 238 50 HOH HOH . H 4 HOH A 27 239 51 HOH HOH . H 4 HOH A 28 240 52 HOH HOH . H 4 HOH A 29 241 53 HOH HOH . H 4 HOH A 30 242 54 HOH HOH . H 4 HOH A 31 243 57 HOH HOH . H 4 HOH A 32 244 58 HOH HOH . H 4 HOH A 33 245 64 HOH HOH . H 4 HOH A 34 246 67 HOH HOH . H 4 HOH A 35 247 68 HOH HOH . H 4 HOH A 36 248 69 HOH HOH . H 4 HOH A 37 249 71 HOH HOH . H 4 HOH A 38 250 72 HOH HOH . H 4 HOH A 39 251 74 HOH HOH . H 4 HOH A 40 252 75 HOH HOH . H 4 HOH A 41 253 76 HOH HOH . H 4 HOH A 42 254 77 HOH HOH . H 4 HOH A 43 255 79 HOH HOH . H 4 HOH A 44 256 80 HOH HOH . H 4 HOH A 45 257 86 HOH HOH . H 4 HOH A 46 258 90 HOH HOH . H 4 HOH A 47 259 92 HOH HOH . H 4 HOH A 48 260 98 HOH HOH . H 4 HOH A 49 261 99 HOH HOH . H 4 HOH A 50 262 100 HOH HOH . H 4 HOH A 51 263 101 HOH HOH . H 4 HOH A 52 264 102 HOH HOH . H 4 HOH A 53 265 103 HOH HOH . H 4 HOH A 54 266 104 HOH HOH . H 4 HOH A 55 267 106 HOH HOH . H 4 HOH A 56 268 108 HOH HOH . H 4 HOH A 57 269 109 HOH HOH . H 4 HOH A 58 270 113 HOH HOH . H 4 HOH A 59 271 115 HOH HOH . H 4 HOH A 60 272 116 HOH HOH . H 4 HOH A 61 273 121 HOH HOH . H 4 HOH A 62 274 123 HOH HOH . H 4 HOH A 63 275 125 HOH HOH . H 4 HOH A 64 276 127 HOH HOH . H 4 HOH A 65 277 129 HOH HOH . H 4 HOH A 66 278 131 HOH HOH . H 4 HOH A 67 279 132 HOH HOH . H 4 HOH A 68 280 135 HOH HOH . H 4 HOH A 69 281 140 HOH HOH . H 4 HOH A 70 282 141 HOH HOH . H 4 HOH A 71 283 142 HOH HOH . H 4 HOH A 72 284 144 HOH HOH . H 4 HOH A 73 285 145 HOH HOH . H 4 HOH A 74 286 148 HOH HOH . H 4 HOH A 75 287 151 HOH HOH . H 4 HOH A 76 288 153 HOH HOH . H 4 HOH A 77 289 155 HOH HOH . H 4 HOH A 78 290 158 HOH HOH . H 4 HOH A 79 291 162 HOH HOH . H 4 HOH A 80 292 166 HOH HOH . H 4 HOH A 81 293 167 HOH HOH . H 4 HOH A 82 294 170 HOH HOH . H 4 HOH A 83 295 171 HOH HOH . H 4 HOH A 84 296 172 HOH HOH . H 4 HOH A 85 297 176 HOH HOH . H 4 HOH A 86 298 177 HOH HOH . H 4 HOH A 87 299 178 HOH HOH . H 4 HOH A 88 300 184 HOH HOH . H 4 HOH A 89 301 187 HOH HOH . H 4 HOH A 90 302 191 HOH HOH . H 4 HOH A 91 303 192 HOH HOH . H 4 HOH A 92 304 194 HOH HOH . H 4 HOH A 93 305 195 HOH HOH . H 4 HOH A 94 306 196 HOH HOH . H 4 HOH A 95 307 200 HOH HOH . H 4 HOH A 96 308 201 HOH HOH . H 4 HOH A 97 309 205 HOH HOH . H 4 HOH A 98 310 206 HOH HOH . H 4 HOH A 99 311 209 HOH HOH . H 4 HOH A 100 312 212 HOH HOH . H 4 HOH A 101 313 213 HOH HOH . H 4 HOH A 102 314 214 HOH HOH . H 4 HOH A 103 315 215 HOH HOH . H 4 HOH A 104 316 222 HOH HOH . H 4 HOH A 105 317 223 HOH HOH . H 4 HOH A 106 318 227 HOH HOH . H 4 HOH A 107 319 228 HOH HOH . H 4 HOH A 108 320 230 HOH HOH . H 4 HOH A 109 321 231 HOH HOH . H 4 HOH A 110 322 233 HOH HOH . H 4 HOH A 111 323 235 HOH HOH . H 4 HOH A 112 324 236 HOH HOH . H 4 HOH A 113 325 237 HOH HOH . H 4 HOH A 114 326 238 HOH HOH . H 4 HOH A 115 327 239 HOH HOH . H 4 HOH A 116 328 240 HOH HOH . H 4 HOH A 117 329 241 HOH HOH . H 4 HOH A 118 330 243 HOH HOH . H 4 HOH A 119 331 245 HOH HOH . H 4 HOH A 120 332 249 HOH HOH . H 4 HOH A 121 333 250 HOH HOH . H 4 HOH A 122 334 251 HOH HOH . H 4 HOH A 123 335 252 HOH HOH . H 4 HOH A 124 336 253 HOH HOH . H 4 HOH A 125 337 259 HOH HOH . H 4 HOH A 126 338 260 HOH HOH . H 4 HOH A 127 339 261 HOH HOH . H 4 HOH A 128 340 262 HOH HOH . H 4 HOH A 129 341 263 HOH HOH . I 4 HOH B 1 212 2 HOH HOH . I 4 HOH B 2 213 4 HOH HOH . I 4 HOH B 3 214 5 HOH HOH . I 4 HOH B 4 215 7 HOH HOH . I 4 HOH B 5 216 10 HOH HOH . I 4 HOH B 6 217 13 HOH HOH . I 4 HOH B 7 218 15 HOH HOH . I 4 HOH B 8 219 16 HOH HOH . I 4 HOH B 9 220 17 HOH HOH . I 4 HOH B 10 221 22 HOH HOH . I 4 HOH B 11 222 24 HOH HOH . I 4 HOH B 12 223 29 HOH HOH . I 4 HOH B 13 224 30 HOH HOH . I 4 HOH B 14 225 33 HOH HOH . I 4 HOH B 15 226 34 HOH HOH . I 4 HOH B 16 227 35 HOH HOH . I 4 HOH B 17 228 36 HOH HOH . I 4 HOH B 18 229 38 HOH HOH . I 4 HOH B 19 230 41 HOH HOH . I 4 HOH B 20 231 42 HOH HOH . I 4 HOH B 21 232 43 HOH HOH . I 4 HOH B 22 233 44 HOH HOH . I 4 HOH B 23 234 46 HOH HOH . I 4 HOH B 24 235 48 HOH HOH . I 4 HOH B 25 236 55 HOH HOH . I 4 HOH B 26 237 56 HOH HOH . I 4 HOH B 27 238 59 HOH HOH . I 4 HOH B 28 239 60 HOH HOH . I 4 HOH B 29 240 61 HOH HOH . I 4 HOH B 30 241 62 HOH HOH . I 4 HOH B 31 242 63 HOH HOH . I 4 HOH B 32 243 65 HOH HOH . I 4 HOH B 33 244 66 HOH HOH . I 4 HOH B 34 245 70 HOH HOH . I 4 HOH B 35 246 73 HOH HOH . I 4 HOH B 36 247 78 HOH HOH . I 4 HOH B 37 248 81 HOH HOH . I 4 HOH B 38 249 82 HOH HOH . I 4 HOH B 39 250 83 HOH HOH . I 4 HOH B 40 251 84 HOH HOH . I 4 HOH B 41 252 85 HOH HOH . I 4 HOH B 42 253 87 HOH HOH . I 4 HOH B 43 254 88 HOH HOH . I 4 HOH B 44 255 89 HOH HOH . I 4 HOH B 45 256 91 HOH HOH . I 4 HOH B 46 257 93 HOH HOH . I 4 HOH B 47 258 94 HOH HOH . I 4 HOH B 48 259 95 HOH HOH . I 4 HOH B 49 260 96 HOH HOH . I 4 HOH B 50 261 97 HOH HOH . I 4 HOH B 51 262 105 HOH HOH . I 4 HOH B 52 263 107 HOH HOH . I 4 HOH B 53 264 110 HOH HOH . I 4 HOH B 54 265 111 HOH HOH . I 4 HOH B 55 266 112 HOH HOH . I 4 HOH B 56 267 114 HOH HOH . I 4 HOH B 57 268 117 HOH HOH . I 4 HOH B 58 269 118 HOH HOH . I 4 HOH B 59 270 119 HOH HOH . I 4 HOH B 60 271 120 HOH HOH . I 4 HOH B 61 272 122 HOH HOH . I 4 HOH B 62 273 124 HOH HOH . I 4 HOH B 63 274 126 HOH HOH . I 4 HOH B 64 275 128 HOH HOH . I 4 HOH B 65 276 130 HOH HOH . I 4 HOH B 66 277 133 HOH HOH . I 4 HOH B 67 278 134 HOH HOH . I 4 HOH B 68 279 136 HOH HOH . I 4 HOH B 69 280 137 HOH HOH . I 4 HOH B 70 281 138 HOH HOH . I 4 HOH B 71 282 139 HOH HOH . I 4 HOH B 72 283 143 HOH HOH . I 4 HOH B 73 284 146 HOH HOH . I 4 HOH B 74 285 147 HOH HOH . I 4 HOH B 75 286 149 HOH HOH . I 4 HOH B 76 287 150 HOH HOH . I 4 HOH B 77 288 152 HOH HOH . I 4 HOH B 78 289 154 HOH HOH . I 4 HOH B 79 290 156 HOH HOH . I 4 HOH B 80 291 157 HOH HOH . I 4 HOH B 81 292 159 HOH HOH . I 4 HOH B 82 293 160 HOH HOH . I 4 HOH B 83 294 161 HOH HOH . I 4 HOH B 84 295 163 HOH HOH . I 4 HOH B 85 296 164 HOH HOH . I 4 HOH B 86 297 165 HOH HOH . I 4 HOH B 87 298 168 HOH HOH . I 4 HOH B 88 299 169 HOH HOH . I 4 HOH B 89 300 173 HOH HOH . I 4 HOH B 90 301 174 HOH HOH . I 4 HOH B 91 302 175 HOH HOH . I 4 HOH B 92 303 179 HOH HOH . I 4 HOH B 93 304 180 HOH HOH . I 4 HOH B 94 305 181 HOH HOH . I 4 HOH B 95 306 182 HOH HOH . I 4 HOH B 96 307 183 HOH HOH . I 4 HOH B 97 308 185 HOH HOH . I 4 HOH B 98 309 186 HOH HOH . I 4 HOH B 99 310 188 HOH HOH . I 4 HOH B 100 311 189 HOH HOH . I 4 HOH B 101 312 190 HOH HOH . I 4 HOH B 102 313 193 HOH HOH . I 4 HOH B 103 314 197 HOH HOH . I 4 HOH B 104 315 198 HOH HOH . I 4 HOH B 105 316 199 HOH HOH . I 4 HOH B 106 317 202 HOH HOH . I 4 HOH B 107 318 203 HOH HOH . I 4 HOH B 108 319 204 HOH HOH . I 4 HOH B 109 320 207 HOH HOH . I 4 HOH B 110 321 208 HOH HOH . I 4 HOH B 111 322 210 HOH HOH . I 4 HOH B 112 323 211 HOH HOH . I 4 HOH B 113 324 216 HOH HOH . I 4 HOH B 114 325 217 HOH HOH . I 4 HOH B 115 326 218 HOH HOH . I 4 HOH B 116 327 219 HOH HOH . I 4 HOH B 117 328 220 HOH HOH . I 4 HOH B 118 329 221 HOH HOH . I 4 HOH B 119 330 224 HOH HOH . I 4 HOH B 120 331 225 HOH HOH . I 4 HOH B 121 332 226 HOH HOH . I 4 HOH B 122 333 229 HOH HOH . I 4 HOH B 123 334 232 HOH HOH . I 4 HOH B 124 335 234 HOH HOH . I 4 HOH B 125 336 242 HOH HOH . I 4 HOH B 126 337 244 HOH HOH . I 4 HOH B 127 338 246 HOH HOH . I 4 HOH B 128 339 247 HOH HOH . I 4 HOH B 129 340 248 HOH HOH . I 4 HOH B 130 341 254 HOH HOH . I 4 HOH B 131 342 255 HOH HOH . I 4 HOH B 132 343 256 HOH HOH . I 4 HOH B 133 344 257 HOH HOH . I 4 HOH B 134 345 258 HOH HOH . I 4 HOH B 135 346 264 HOH HOH . I 4 HOH B 136 347 265 HOH HOH . I 4 HOH B 137 348 266 HOH HOH . I 4 HOH B 138 349 267 HOH HOH . I 4 HOH B 139 350 268 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GSH . . . F 2 16.628 12.896 10.087 1 15.35 ? N1 GSH 210 B 1 HETATM 2 C CA1 GSH . . . F 2 16.812 13.673 8.827 1 16 ? CA1 GSH 210 B 1 HETATM 3 C C1 GSH . . . F 2 17.73 14.855 9.095 1 15.02 ? C1 GSH 210 B 1 HETATM 4 O O11 GSH . . . F 2 18.327 15.386 8.139 1 14.56 ? O11 GSH 210 B 1 HETATM 5 O O12 GSH . . . F 2 17.867 15.204 10.283 1 15.47 ? O12 GSH 210 B 1 HETATM 6 C CB1 GSH . . . F 2 15.465 14.172 8.312 1 15.68 ? CB1 GSH 210 B 1 HETATM 7 C CG1 GSH . . . F 2 15.544 14.759 6.923 1 18.86 ? CG1 GSH 210 B 1 HETATM 8 C CD1 GSH . . . F 2 14.209 15.192 6.367 1 18.71 ? CD1 GSH 210 B 1 HETATM 9 O OE1 GSH . . . F 2 13.166 15.068 7.002 1 19.72 ? OE1 GSH 210 B 1 HETATM 10 N N2 GSH . . . F 2 14.246 15.673 5.135 1 20.11 ? N2 GSH 210 B 1 HETATM 11 C CA2 GSH . . . F 2 13.056 16.147 4.458 1 19.73 ? CA2 GSH 210 B 1 HETATM 12 C C2 GSH . . . F 2 13.049 15.574 3.054 1 18.03 ? C2 GSH 210 B 1 HETATM 13 O O2 GSH . . . F 2 14.099 15.311 2.481 1 18.7 ? O2 GSH 210 B 1 HETATM 14 C CB2 GSH . . . F 2 13.084 17.676 4.392 1 23.19 ? CB2 GSH 210 B 1 HETATM 15 S SG2 GSH . . . F 2 13.535 18.474 5.951 1 34.2 ? SG2 GSH 210 B 1 HETATM 16 N N3 GSH . . . F 2 11.861 15.423 2.492 1 18.46 ? N3 GSH 210 B 1 HETATM 17 C CA3 GSH . . . F 2 11.745 14.884 1.157 1 23.39 ? CA3 GSH 210 B 1 HETATM 18 C C3 GSH . . . F 2 11.406 13.412 1.155 1 27.24 ? C3 GSH 210 B 1 HETATM 19 O O31 GSH . . . F 2 11.184 12.865 0.061 1 29.37 ? O31 GSH 210 B 1 HETATM 20 O O32 GSH . . . F 2 11.336 12.813 2.246 1 32.57 ? O32 GSH 210 B 1 # _model_server_stats.io_time_ms 116 _model_server_stats.parse_time_ms 120 _model_server_stats.create_model_time_ms 115 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 20 #