data_5GT6
#
_model_server_result.job_id            03GaZU9H7n8fhu3rvdfUcQ 
_model_server_result.datetime_utc      '2025-02-18 23:34:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gt6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":501}' 
#
_entry.id    5GT6 
#
_exptl.entry_id    5GT6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.05 
_cell.angle_gamma         90 
_cell.entry_id            5GT6 
_cell.length_a            83.527 
_cell.length_b            93.284 
_cell.length_c            145.472 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GT6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 53 A THR 39 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? 
metalc ? metalc2 A O TYR 54 A TYR 40 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc3 A O ASP 122 A ASP 108 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc4 A OD1 ASP 122 A ASP 108 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc5 A O GLN 209 A GLN 195 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc6 E NA NA . A NA 501 1_555 I O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc7 B OG1 THR 53 B THR 39 1_555 F NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? 
metalc ? metalc8 B O TYR 54 B TYR 40 1_555 F NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc9 B O ASP 122 B ASP 108 1_555 F NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc10 B OD1 ASP 122 B ASP 108 1_555 F NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc11 B O GLN 209 B GLN 195 1_555 F NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc12 F NA NA . B NA 501 1_555 J O HOH . B HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc13 C OG1 THR 53 C THR 39 1_555 G NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? 
metalc ? metalc14 C O TYR 54 C TYR 40 1_555 G NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc15 C O ASP 122 C ASP 108 1_555 G NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc16 C OD1 ASP 122 C ASP 108 1_555 G NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc17 C O GLN 209 C GLN 195 1_555 G NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc18 G NA NA . C NA 501 1_555 K O HOH . C HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc19 D OG1 THR 53 D THR 39 1_555 H NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? 
metalc ? metalc20 D O TYR 54 D TYR 40 1_555 H NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
metalc ? metalc21 D O ASP 122 D ASP 108 1_555 H NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc22 D OD1 ASP 122 D ASP 108 1_555 H NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc23 D O GLN 209 D GLN 195 1_555 H NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc24 H NA NA . D NA 501 1_555 L O HOH . D HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5GT6 
_atom_sites.fract_transf_matrix[1][1]    0.011972 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001692 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01072 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006943 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NA A 1 501 501 NA NA . 
F 2 NA B 1 501 495 NA NA . 
G 2 NA C 1 501 495 NA NA . 
H 2 NA D 1 501 501 NA NA . 
I 3 HOH A 1 601 602 HOH HOH . 
I 3 HOH A 2 602 601 HOH HOH . 
I 3 HOH A 3 603 603 HOH HOH . 
I 3 HOH A 4 604 605 HOH HOH . 
I 3 HOH A 5 605 606 HOH HOH . 
I 3 HOH A 6 606 604 HOH HOH . 
I 3 HOH A 7 607 612 HOH HOH . 
I 3 HOH A 8 608 609 HOH HOH . 
I 3 HOH A 9 609 607 HOH HOH . 
I 3 HOH A 10 610 608 HOH HOH . 
I 3 HOH A 11 611 611 HOH HOH . 
I 3 HOH A 12 612 613 HOH HOH . 
I 3 HOH A 13 613 623 HOH HOH . 
I 3 HOH A 14 614 615 HOH HOH . 
I 3 HOH A 15 615 610 HOH HOH . 
I 3 HOH A 16 616 616 HOH HOH . 
I 3 HOH A 17 617 614 HOH HOH . 
I 3 HOH A 18 618 620 HOH HOH . 
I 3 HOH A 19 619 617 HOH HOH . 
I 3 HOH A 20 620 618 HOH HOH . 
I 3 HOH A 21 621 619 HOH HOH . 
I 3 HOH A 22 622 621 HOH HOH . 
I 3 HOH A 23 623 622 HOH HOH . 
I 3 HOH A 24 624 624 HOH HOH . 
I 3 HOH A 25 625 625 HOH HOH . 
I 3 HOH A 26 626 626 HOH HOH . 
J 3 HOH B 1 601 502 HOH HOH . 
J 3 HOH B 2 602 501 HOH HOH . 
J 3 HOH B 3 603 504 HOH HOH . 
J 3 HOH B 4 604 505 HOH HOH . 
J 3 HOH B 5 605 506 HOH HOH . 
J 3 HOH B 6 606 507 HOH HOH . 
J 3 HOH B 7 607 509 HOH HOH . 
J 3 HOH B 8 608 525 HOH HOH . 
J 3 HOH B 9 609 511 HOH HOH . 
J 3 HOH B 10 610 513 HOH HOH . 
J 3 HOH B 11 611 512 HOH HOH . 
J 3 HOH B 12 612 516 HOH HOH . 
J 3 HOH B 13 613 514 HOH HOH . 
J 3 HOH B 14 614 510 HOH HOH . 
J 3 HOH B 15 615 518 HOH HOH . 
J 3 HOH B 16 616 517 HOH HOH . 
J 3 HOH B 17 617 515 HOH HOH . 
J 3 HOH B 18 618 520 HOH HOH . 
J 3 HOH B 19 619 519 HOH HOH . 
J 3 HOH B 20 620 522 HOH HOH . 
J 3 HOH B 21 621 524 HOH HOH . 
J 3 HOH B 22 622 521 HOH HOH . 
J 3 HOH B 23 623 523 HOH HOH . 
K 3 HOH C 1 601 501 HOH HOH . 
K 3 HOH C 2 602 525 HOH HOH . 
K 3 HOH C 3 603 505 HOH HOH . 
K 3 HOH C 4 604 503 HOH HOH . 
K 3 HOH C 5 605 502 HOH HOH . 
K 3 HOH C 6 606 506 HOH HOH . 
K 3 HOH C 7 607 507 HOH HOH . 
K 3 HOH C 8 608 508 HOH HOH . 
K 3 HOH C 9 609 512 HOH HOH . 
K 3 HOH C 10 610 508 HOH HOH . 
K 3 HOH C 11 611 503 HOH HOH . 
K 3 HOH C 12 612 510 HOH HOH . 
K 3 HOH C 13 613 520 HOH HOH . 
K 3 HOH C 14 614 509 HOH HOH . 
K 3 HOH C 15 615 513 HOH HOH . 
K 3 HOH C 16 616 514 HOH HOH . 
K 3 HOH C 17 617 511 HOH HOH . 
K 3 HOH C 18 618 515 HOH HOH . 
K 3 HOH C 19 619 518 HOH HOH . 
K 3 HOH C 20 620 521 HOH HOH . 
K 3 HOH C 21 621 519 HOH HOH . 
K 3 HOH C 22 622 517 HOH HOH . 
K 3 HOH C 23 623 524 HOH HOH . 
K 3 HOH C 24 624 516 HOH HOH . 
K 3 HOH C 25 625 522 HOH HOH . 
K 3 HOH C 26 626 523 HOH HOH . 
L 3 HOH D 1 601 601 HOH HOH . 
L 3 HOH D 2 602 607 HOH HOH . 
L 3 HOH D 3 603 602 HOH HOH . 
L 3 HOH D 4 604 603 HOH HOH . 
L 3 HOH D 5 605 606 HOH HOH . 
L 3 HOH D 6 606 611 HOH HOH . 
L 3 HOH D 7 607 605 HOH HOH . 
L 3 HOH D 8 608 604 HOH HOH . 
L 3 HOH D 9 609 609 HOH HOH . 
L 3 HOH D 10 610 608 HOH HOH . 
L 3 HOH D 11 611 610 HOH HOH . 
L 3 HOH D 12 612 612 HOH HOH . 
L 3 HOH D 13 613 613 HOH HOH . 
L 3 HOH D 14 614 614 HOH HOH . 
L 3 HOH D 15 615 615 HOH HOH . 
L 3 HOH D 16 616 616 HOH HOH . 
L 3 HOH D 17 617 617 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -41.996 
_atom_site.Cartn_y               17.791 
_atom_site.Cartn_z               12.18 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        18.34 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           354 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#