data_5GTO # _model_server_result.job_id k5Wxl5WeRUySg_ANzxgw6w _model_server_result.datetime_utc '2024-11-24 21:16:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gto # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5GTO # _exptl.entry_id 5GTO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 617.646 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[4-[5-[(1~{S})-1-[(3,5-dimethoxyphenyl)carbamoyl-(phenylmethyl)carbamoyl]oxypropyl]-1,2-oxazol-3-yl]phenoxy]-2-methyl-propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5GTO _cell.length_a 131.823 _cell.length_b 53.286 _cell.length_c 53.74 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GTO _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C33 H35 N3 O9' _chem_comp.formula_weight 617.646 _chem_comp.id T35 _chem_comp.mon_nstd_flag . _chem_comp.name '2-[4-[5-[(1~{S})-1-[(3,5-dimethoxyphenyl)carbamoyl-(phenylmethyl)carbamoyl]oxypropyl]-1,2-oxazol-3-yl]phenoxy]-2-methyl-propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC OBB T35 sing 346 n n OBB CBM T35 sing 347 n n CBM CAT T35 doub 348 n y CBM CAU T35 sing 349 n y CAT CBJ T35 sing 350 n y CAU CBL T35 doub 351 n y OAG CBG T35 doub 352 n n CAN CAL T35 doub 353 n y CAN CBI T35 sing 354 n y CAL CAJ T35 sing 355 n y CBJ NAZ T35 sing 356 n n CBJ CAS T35 doub 357 n y CBG NAZ T35 sing 358 n n CBG NBR T35 sing 359 n n CBL CAS T35 sing 360 n y CBL OBA T35 sing 361 n n CAX CBI T35 sing 362 n n CAX NBR T35 sing 363 n n CBI CAM T35 doub 364 n y CAJ CAK T35 doub 365 n y OBA CAB T35 sing 366 n n NBR CBH T35 sing 367 n n CAM CAK T35 sing 368 n y CBH OAH T35 doub 369 n n CBH OBC T35 sing 370 n n OBC CBQ T35 sing 371 n n CBQ CBP T35 sing 372 n n CBQ CAW T35 sing 373 n n OBE CBP T35 sing 374 n y OBE NAY T35 sing 375 n y CBP CAV T35 doub 376 n y CAW CAA T35 sing 377 n n NAY CBO T35 doub 378 n y CAV CBO T35 sing 379 n y CAQ CAO T35 doub 380 n y CAQ CBN T35 sing 381 n y CBO CBN T35 sing 382 n n CAO CBK T35 sing 383 n y CBN CAR T35 doub 384 n y CBK OBD T35 sing 385 n n CBK CAP T35 doub 386 n y CAR CAP T35 sing 387 n y OBD CBS T35 sing 388 n n CAE CBS T35 sing 389 n n CBS CAD T35 sing 390 n n CBS CBF T35 sing 391 n n CBF OAF T35 doub 392 n n CBF OAI T35 sing 393 n n OAI H1 T35 sing 394 n n CAD H2 T35 sing 395 n n CAD H3 T35 sing 396 n n CAD H4 T35 sing 397 n n CAE H5 T35 sing 398 n n CAE H6 T35 sing 399 n n CAE H7 T35 sing 400 n n CAP H8 T35 sing 401 n n CAR H9 T35 sing 402 n n CAO H10 T35 sing 403 n n CAQ H11 T35 sing 404 n n CAV H12 T35 sing 405 n n CBQ H13 T35 sing 406 n n CAW H14 T35 sing 407 n n CAW H15 T35 sing 408 n n CAA H16 T35 sing 409 n n CAA H17 T35 sing 410 n n CAA H18 T35 sing 411 n n CAX H19 T35 sing 412 n n CAX H20 T35 sing 413 n n CAM H21 T35 sing 414 n n CAK H22 T35 sing 415 n n CAJ H23 T35 sing 416 n n CAL H24 T35 sing 417 n n CAN H25 T35 sing 418 n n NAZ H26 T35 sing 419 n n CAT H27 T35 sing 420 n n CAS H28 T35 sing 421 n n CAB H29 T35 sing 422 n n CAB H30 T35 sing 423 n n CAB H31 T35 sing 424 n n CAU H32 T35 sing 425 n n CAC H33 T35 sing 426 n n CAC H34 T35 sing 427 n n CAC H35 T35 sing 428 n n # _atom_sites.entry_id 5GTO _atom_sites.fract_transf_matrix[1][1] 0.007586 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018767 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 T35 A 1 501 1 T35 S35 . D 4 MYR A 1 502 11 MYR MRI . E 5 GOL A 1 503 21 GOL GRL . F 6 HOH A 1 601 74 HOH HOH . F 6 HOH A 2 602 21 HOH HOH . F 6 HOH A 3 603 23 HOH HOH . F 6 HOH A 4 604 4 HOH HOH . F 6 HOH A 5 605 38 HOH HOH . F 6 HOH A 6 606 33 HOH HOH . F 6 HOH A 7 607 47 HOH HOH . F 6 HOH A 8 608 40 HOH HOH . F 6 HOH A 9 609 18 HOH HOH . F 6 HOH A 10 610 20 HOH HOH . F 6 HOH A 11 611 85 HOH HOH . F 6 HOH A 12 612 13 HOH HOH . F 6 HOH A 13 613 7 HOH HOH . F 6 HOH A 14 614 44 HOH HOH . F 6 HOH A 15 615 14 HOH HOH . F 6 HOH A 16 616 2 HOH HOH . F 6 HOH A 17 617 67 HOH HOH . F 6 HOH A 18 618 6 HOH HOH . F 6 HOH A 19 619 88 HOH HOH . F 6 HOH A 20 620 69 HOH HOH . F 6 HOH A 21 621 3 HOH HOH . F 6 HOH A 22 622 1 HOH HOH . F 6 HOH A 23 623 43 HOH HOH . F 6 HOH A 24 624 63 HOH HOH . F 6 HOH A 25 625 8 HOH HOH . F 6 HOH A 26 626 5 HOH HOH . F 6 HOH A 27 627 11 HOH HOH . F 6 HOH A 28 628 56 HOH HOH . F 6 HOH A 29 629 73 HOH HOH . F 6 HOH A 30 630 106 HOH HOH . F 6 HOH A 31 631 62 HOH HOH . F 6 HOH A 32 632 31 HOH HOH . F 6 HOH A 33 633 30 HOH HOH . F 6 HOH A 34 634 16 HOH HOH . F 6 HOH A 35 635 60 HOH HOH . F 6 HOH A 36 636 35 HOH HOH . F 6 HOH A 37 637 19 HOH HOH . F 6 HOH A 38 638 26 HOH HOH . F 6 HOH A 39 639 55 HOH HOH . F 6 HOH A 40 640 27 HOH HOH . F 6 HOH A 41 641 10 HOH HOH . F 6 HOH A 42 642 39 HOH HOH . F 6 HOH A 43 643 68 HOH HOH . F 6 HOH A 44 644 9 HOH HOH . F 6 HOH A 45 645 91 HOH HOH . F 6 HOH A 46 646 82 HOH HOH . F 6 HOH A 47 647 71 HOH HOH . F 6 HOH A 48 648 24 HOH HOH . F 6 HOH A 49 649 12 HOH HOH . F 6 HOH A 50 650 72 HOH HOH . F 6 HOH A 51 651 98 HOH HOH . F 6 HOH A 52 652 51 HOH HOH . F 6 HOH A 53 653 53 HOH HOH . F 6 HOH A 54 654 54 HOH HOH . F 6 HOH A 55 655 25 HOH HOH . F 6 HOH A 56 656 49 HOH HOH . F 6 HOH A 57 657 105 HOH HOH . F 6 HOH A 58 658 41 HOH HOH . F 6 HOH A 59 659 37 HOH HOH . F 6 HOH A 60 660 58 HOH HOH . F 6 HOH A 61 661 64 HOH HOH . F 6 HOH A 62 662 50 HOH HOH . F 6 HOH A 63 663 57 HOH HOH . F 6 HOH A 64 664 79 HOH HOH . F 6 HOH A 65 665 65 HOH HOH . F 6 HOH A 66 666 17 HOH HOH . F 6 HOH A 67 667 92 HOH HOH . F 6 HOH A 68 668 83 HOH HOH . F 6 HOH A 69 669 29 HOH HOH . F 6 HOH A 70 670 34 HOH HOH . F 6 HOH A 71 671 46 HOH HOH . F 6 HOH A 72 672 42 HOH HOH . F 6 HOH A 73 673 77 HOH HOH . F 6 HOH A 74 674 101 HOH HOH . F 6 HOH A 75 675 87 HOH HOH . F 6 HOH A 76 676 97 HOH HOH . F 6 HOH A 77 677 52 HOH HOH . F 6 HOH A 78 678 15 HOH HOH . F 6 HOH A 79 679 95 HOH HOH . F 6 HOH A 80 680 28 HOH HOH . F 6 HOH A 81 681 59 HOH HOH . F 6 HOH A 82 682 32 HOH HOH . F 6 HOH A 83 683 100 HOH HOH . F 6 HOH A 84 684 102 HOH HOH . F 6 HOH A 85 685 78 HOH HOH . F 6 HOH A 86 686 61 HOH HOH . F 6 HOH A 87 687 36 HOH HOH . F 6 HOH A 88 688 22 HOH HOH . F 6 HOH A 89 689 80 HOH HOH . F 6 HOH A 90 690 104 HOH HOH . F 6 HOH A 91 691 94 HOH HOH . F 6 HOH A 92 692 76 HOH HOH . F 6 HOH A 93 693 75 HOH HOH . F 6 HOH A 94 694 81 HOH HOH . F 6 HOH A 95 695 86 HOH HOH . F 6 HOH A 96 696 84 HOH HOH . F 6 HOH A 97 697 45 HOH HOH . F 6 HOH A 98 698 48 HOH HOH . F 6 HOH A 99 699 90 HOH HOH . F 6 HOH A 100 700 103 HOH HOH . F 6 HOH A 101 701 66 HOH HOH . F 6 HOH A 102 702 89 HOH HOH . F 6 HOH A 103 703 70 HOH HOH . F 6 HOH A 104 704 93 HOH HOH . F 6 HOH A 105 705 99 HOH HOH . F 6 HOH A 106 706 96 HOH HOH . G 6 HOH B 1 801 108 HOH HOH . G 6 HOH B 2 802 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAF T35 . . . C 3 -32.944 14.279 8.467 1 65.14 ? OAF T35 501 A 1 HETATM 2 C CBF T35 . . . C 3 -31.792 13.832 8.249 1 69.68 ? CBF T35 501 A 1 HETATM 3 O OAI T35 . . . C 3 -30.85 13.854 9.073 1 67.4 ? OAI T35 501 A 1 HETATM 4 C CBS T35 . . . C 3 -31.539 13.111 6.893 1 71.43 ? CBS T35 501 A 1 HETATM 5 C CAD T35 . . . C 3 -32.157 11.695 7.004 1 70.44 ? CAD T35 501 A 1 HETATM 6 C CAE T35 . . . C 3 -30.028 12.993 6.573 1 72.61 ? CAE T35 501 A 1 HETATM 7 O OBD T35 . . . C 3 -32.187 13.771 5.759 1 70.35 ? OBD T35 501 A 1 HETATM 8 C CBK T35 . . . C 3 -32.217 15.121 5.445 1 72.72 ? CBK T35 501 A 1 HETATM 9 C CAP T35 . . . C 3 -31.397 16.124 5.992 1 71.88 ? CAP T35 501 A 1 HETATM 10 C CAR T35 . . . C 3 -31.543 17.465 5.592 1 74.88 ? CAR T35 501 A 1 HETATM 11 C CAO T35 . . . C 3 -33.166 15.504 4.494 1 71.82 ? CAO T35 501 A 1 HETATM 12 C CAQ T35 . . . C 3 -33.313 16.838 4.093 1 73.61 ? CAQ T35 501 A 1 HETATM 13 C CBN T35 . . . C 3 -32.495 17.839 4.627 1 78.01 ? CBN T35 501 A 1 HETATM 14 C CBO T35 . . . C 3 -32.657 19.119 4.229 1 84.19 ? CBO T35 501 A 1 HETATM 15 C CAV T35 . . . C 3 -31.698 20.051 4.067 1 87.35 ? CAV T35 501 A 1 HETATM 16 N NAY T35 . . . C 3 -33.848 19.639 3.943 1 85.42 ? NAY T35 501 A 1 HETATM 17 O OBE T35 . . . C 3 -33.645 20.949 3.582 1 89.97 ? OBE T35 501 A 1 HETATM 18 C CBP T35 . . . C 3 -32.291 21.185 3.661 1 89.93 ? CBP T35 501 A 1 HETATM 19 C CBQ T35 . . . C 3 -31.635 22.574 3.346 1 95.61 ? CBQ T35 501 A 1 HETATM 20 C CAW T35 . . . C 3 -32.537 23.653 3.933 1 93.75 ? CAW T35 501 A 1 HETATM 21 C CAA T35 . . . C 3 -32.094 23.955 5.375 1 92.8 ? CAA T35 501 A 1 HETATM 22 O OBC T35 . . . C 3 -31.546 22.86 1.917 1 100.61 ? OBC T35 501 A 1 HETATM 23 C CBH T35 . . . C 3 -30.379 23.177 1.218 1 89.8 ? CBH T35 501 A 1 HETATM 24 O OAH T35 . . . C 3 -29.391 23.624 1.816 1 86.64 ? OAH T35 501 A 1 HETATM 25 N NBR T35 . . . C 3 -30.361 22.991 -0.151 1 81.69 ? NBR T35 501 A 1 HETATM 26 C CAX T35 . . . C 3 -31.59 22.483 -0.79 1 87.1 ? CAX T35 501 A 1 HETATM 27 C CBI T35 . . . C 3 -31.68 21.06 -0.649 1 93.43 ? CBI T35 501 A 1 HETATM 28 C CAM T35 . . . C 3 -32.581 20.474 0.271 1 92.52 ? CAM T35 501 A 1 HETATM 29 C CAK T35 . . . C 3 -32.685 19.087 0.418 1 89.94 ? CAK T35 501 A 1 HETATM 30 C CAJ T35 . . . C 3 -31.884 18.257 -0.36 1 89.57 ? CAJ T35 501 A 1 HETATM 31 C CAL T35 . . . C 3 -30.991 18.819 -1.277 1 90.25 ? CAL T35 501 A 1 HETATM 32 C CAN T35 . . . C 3 -30.887 20.207 -1.428 1 92.45 ? CAN T35 501 A 1 HETATM 33 C CBG T35 . . . C 3 -29.237 23.29 -0.926 1 68.89 ? CBG T35 501 A 1 HETATM 34 O OAG T35 . . . C 3 -29.283 23.108 -2.142 1 60.7 ? OAG T35 501 A 1 HETATM 35 N NAZ T35 . . . C 3 -28.085 23.747 -0.341 1 65.92 ? NAZ T35 501 A 1 HETATM 36 C CBJ T35 . . . C 3 -26.955 24.107 -1.02 1 65.99 ? CBJ T35 501 A 1 HETATM 37 C CAT T35 . . . C 3 -26.594 23.755 -2.338 1 66.5 ? CAT T35 501 A 1 HETATM 38 C CAS T35 . . . C 3 -26.055 24.922 -0.323 1 66.06 ? CAS T35 501 A 1 HETATM 39 C CBL T35 . . . C 3 -24.855 25.372 -0.899 1 67.07 ? CBL T35 501 A 1 HETATM 40 O OBA T35 . . . C 3 -23.988 26.185 -0.225 1 70.75 ? OBA T35 501 A 1 HETATM 41 C CAB T35 . . . C 3 -23.651 25.774 1.115 1 71.6 ? CAB T35 501 A 1 HETATM 42 C CAU T35 . . . C 3 -24.527 25.019 -2.201 1 64.23 ? CAU T35 501 A 1 HETATM 43 C CBM T35 . . . C 3 -25.401 24.211 -2.923 1 66.01 ? CBM T35 501 A 1 HETATM 44 O OBB T35 . . . C 3 -25.101 23.832 -4.2 1 69.83 ? OBB T35 501 A 1 HETATM 45 C CAC T35 . . . C 3 -24.731 24.856 -5.142 1 69.01 ? CAC T35 501 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 45 #