data_5GTO
#
_model_server_result.job_id            gx2QupE3AW7tGADr2yFxSA 
_model_server_result.datetime_utc      '2024-11-24 21:33:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gto 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":503}' 
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_entry.id    5GTO 
#
_exptl.entry_id    5GTO 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5GTO 
_cell.length_a            131.823 
_cell.length_b            53.286 
_cell.length_c            53.74 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GTO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5GTO 
_atom_sites.fract_transf_matrix[1][1]    0.007586 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018767 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018608 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 T35 A 1 501 1 T35 S35 . 
D 4 MYR A 1 502 11 MYR MRI . 
E 5 GOL A 1 503 21 GOL GRL . 
F 6 HOH A 1 601 74 HOH HOH . 
F 6 HOH A 2 602 21 HOH HOH . 
F 6 HOH A 3 603 23 HOH HOH . 
F 6 HOH A 4 604 4 HOH HOH . 
F 6 HOH A 5 605 38 HOH HOH . 
F 6 HOH A 6 606 33 HOH HOH . 
F 6 HOH A 7 607 47 HOH HOH . 
F 6 HOH A 8 608 40 HOH HOH . 
F 6 HOH A 9 609 18 HOH HOH . 
F 6 HOH A 10 610 20 HOH HOH . 
F 6 HOH A 11 611 85 HOH HOH . 
F 6 HOH A 12 612 13 HOH HOH . 
F 6 HOH A 13 613 7 HOH HOH . 
F 6 HOH A 14 614 44 HOH HOH . 
F 6 HOH A 15 615 14 HOH HOH . 
F 6 HOH A 16 616 2 HOH HOH . 
F 6 HOH A 17 617 67 HOH HOH . 
F 6 HOH A 18 618 6 HOH HOH . 
F 6 HOH A 19 619 88 HOH HOH . 
F 6 HOH A 20 620 69 HOH HOH . 
F 6 HOH A 21 621 3 HOH HOH . 
F 6 HOH A 22 622 1 HOH HOH . 
F 6 HOH A 23 623 43 HOH HOH . 
F 6 HOH A 24 624 63 HOH HOH . 
F 6 HOH A 25 625 8 HOH HOH . 
F 6 HOH A 26 626 5 HOH HOH . 
F 6 HOH A 27 627 11 HOH HOH . 
F 6 HOH A 28 628 56 HOH HOH . 
F 6 HOH A 29 629 73 HOH HOH . 
F 6 HOH A 30 630 106 HOH HOH . 
F 6 HOH A 31 631 62 HOH HOH . 
F 6 HOH A 32 632 31 HOH HOH . 
F 6 HOH A 33 633 30 HOH HOH . 
F 6 HOH A 34 634 16 HOH HOH . 
F 6 HOH A 35 635 60 HOH HOH . 
F 6 HOH A 36 636 35 HOH HOH . 
F 6 HOH A 37 637 19 HOH HOH . 
F 6 HOH A 38 638 26 HOH HOH . 
F 6 HOH A 39 639 55 HOH HOH . 
F 6 HOH A 40 640 27 HOH HOH . 
F 6 HOH A 41 641 10 HOH HOH . 
F 6 HOH A 42 642 39 HOH HOH . 
F 6 HOH A 43 643 68 HOH HOH . 
F 6 HOH A 44 644 9 HOH HOH . 
F 6 HOH A 45 645 91 HOH HOH . 
F 6 HOH A 46 646 82 HOH HOH . 
F 6 HOH A 47 647 71 HOH HOH . 
F 6 HOH A 48 648 24 HOH HOH . 
F 6 HOH A 49 649 12 HOH HOH . 
F 6 HOH A 50 650 72 HOH HOH . 
F 6 HOH A 51 651 98 HOH HOH . 
F 6 HOH A 52 652 51 HOH HOH . 
F 6 HOH A 53 653 53 HOH HOH . 
F 6 HOH A 54 654 54 HOH HOH . 
F 6 HOH A 55 655 25 HOH HOH . 
F 6 HOH A 56 656 49 HOH HOH . 
F 6 HOH A 57 657 105 HOH HOH . 
F 6 HOH A 58 658 41 HOH HOH . 
F 6 HOH A 59 659 37 HOH HOH . 
F 6 HOH A 60 660 58 HOH HOH . 
F 6 HOH A 61 661 64 HOH HOH . 
F 6 HOH A 62 662 50 HOH HOH . 
F 6 HOH A 63 663 57 HOH HOH . 
F 6 HOH A 64 664 79 HOH HOH . 
F 6 HOH A 65 665 65 HOH HOH . 
F 6 HOH A 66 666 17 HOH HOH . 
F 6 HOH A 67 667 92 HOH HOH . 
F 6 HOH A 68 668 83 HOH HOH . 
F 6 HOH A 69 669 29 HOH HOH . 
F 6 HOH A 70 670 34 HOH HOH . 
F 6 HOH A 71 671 46 HOH HOH . 
F 6 HOH A 72 672 42 HOH HOH . 
F 6 HOH A 73 673 77 HOH HOH . 
F 6 HOH A 74 674 101 HOH HOH . 
F 6 HOH A 75 675 87 HOH HOH . 
F 6 HOH A 76 676 97 HOH HOH . 
F 6 HOH A 77 677 52 HOH HOH . 
F 6 HOH A 78 678 15 HOH HOH . 
F 6 HOH A 79 679 95 HOH HOH . 
F 6 HOH A 80 680 28 HOH HOH . 
F 6 HOH A 81 681 59 HOH HOH . 
F 6 HOH A 82 682 32 HOH HOH . 
F 6 HOH A 83 683 100 HOH HOH . 
F 6 HOH A 84 684 102 HOH HOH . 
F 6 HOH A 85 685 78 HOH HOH . 
F 6 HOH A 86 686 61 HOH HOH . 
F 6 HOH A 87 687 36 HOH HOH . 
F 6 HOH A 88 688 22 HOH HOH . 
F 6 HOH A 89 689 80 HOH HOH . 
F 6 HOH A 90 690 104 HOH HOH . 
F 6 HOH A 91 691 94 HOH HOH . 
F 6 HOH A 92 692 76 HOH HOH . 
F 6 HOH A 93 693 75 HOH HOH . 
F 6 HOH A 94 694 81 HOH HOH . 
F 6 HOH A 95 695 86 HOH HOH . 
F 6 HOH A 96 696 84 HOH HOH . 
F 6 HOH A 97 697 45 HOH HOH . 
F 6 HOH A 98 698 48 HOH HOH . 
F 6 HOH A 99 699 90 HOH HOH . 
F 6 HOH A 100 700 103 HOH HOH . 
F 6 HOH A 101 701 66 HOH HOH . 
F 6 HOH A 102 702 89 HOH HOH . 
F 6 HOH A 103 703 70 HOH HOH . 
F 6 HOH A 104 704 93 HOH HOH . 
F 6 HOH A 105 705 99 HOH HOH . 
F 6 HOH A 106 706 96 HOH HOH . 
G 6 HOH B 1 801 108 HOH HOH . 
G 6 HOH B 2 802 107 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 5 -19.846 17.894 2.156 1 67.15 ? C1 GOL 503 A 1 
HETATM 2 O O1 GOL . . . E 5 -20.853 18.466 2.979 1 76.12 ? O1 GOL 503 A 1 
HETATM 3 C C2 GOL . . . E 5 -19.75 18.725 0.885 1 69.96 ? C2 GOL 503 A 1 
HETATM 4 O O2 GOL . . . E 5 -18.772 19.743 1.094 1 73.04 ? O2 GOL 503 A 1 
HETATM 5 C C3 GOL . . . E 5 -19.354 17.843 -0.316 1 75.67 ? C3 GOL 503 A 1 
HETATM 6 O O3 GOL . . . E 5 -18.185 17.058 -0.038 1 73.8 ? O3 GOL 503 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           216 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
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