data_5GTP # _model_server_result.job_id YuLytPYvfBsTdtMo7dr0wA _model_server_result.datetime_utc '2024-11-18 03:31:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gtp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5GTP # _exptl.entry_id 5GTP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.371 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5GTP _cell.length_a 131.31 _cell.length_b 53.062 _cell.length_c 53.552 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GTP _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 250 n n C1 O2 MYR sing 251 n n C1 C2 MYR sing 252 n n O2 HO2 MYR sing 253 n n C2 C3 MYR sing 254 n n C2 H21 MYR sing 255 n n C2 H22 MYR sing 256 n n C3 C4 MYR sing 257 n n C3 H31 MYR sing 258 n n C3 H32 MYR sing 259 n n C4 C5 MYR sing 260 n n C4 H41 MYR sing 261 n n C4 H42 MYR sing 262 n n C5 C6 MYR sing 263 n n C5 H51 MYR sing 264 n n C5 H52 MYR sing 265 n n C6 C7 MYR sing 266 n n C6 H61 MYR sing 267 n n C6 H62 MYR sing 268 n n C7 C8 MYR sing 269 n n C7 H71 MYR sing 270 n n C7 H72 MYR sing 271 n n C8 C9 MYR sing 272 n n C8 H81 MYR sing 273 n n C8 H82 MYR sing 274 n n C9 C10 MYR sing 275 n n C9 H91 MYR sing 276 n n C9 H92 MYR sing 277 n n C10 C11 MYR sing 278 n n C10 H101 MYR sing 279 n n C10 H102 MYR sing 280 n n C11 C12 MYR sing 281 n n C11 H111 MYR sing 282 n n C11 H112 MYR sing 283 n n C12 C13 MYR sing 284 n n C12 H121 MYR sing 285 n n C12 H122 MYR sing 286 n n C13 C14 MYR sing 287 n n C13 H131 MYR sing 288 n n C13 H132 MYR sing 289 n n C14 H141 MYR sing 290 n n C14 H142 MYR sing 291 n n C14 H143 MYR sing 292 n n # _atom_sites.entry_id 5GTP _atom_sites.fract_transf_matrix[1][1] 0.007616 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018846 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018673 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MYR A 1 501 1 MYR MRI . D 4 GOL A 1 502 11 GOL GRL . E 5 HOH A 1 601 14 HOH HOH . E 5 HOH A 2 602 7 HOH HOH . E 5 HOH A 3 603 4 HOH HOH . E 5 HOH A 4 604 6 HOH HOH . E 5 HOH A 5 605 45 HOH HOH . E 5 HOH A 6 606 3 HOH HOH . E 5 HOH A 7 607 9 HOH HOH . E 5 HOH A 8 608 2 HOH HOH . E 5 HOH A 9 609 37 HOH HOH . E 5 HOH A 10 610 40 HOH HOH . E 5 HOH A 11 611 17 HOH HOH . E 5 HOH A 12 612 24 HOH HOH . E 5 HOH A 13 613 12 HOH HOH . E 5 HOH A 14 614 18 HOH HOH . E 5 HOH A 15 615 5 HOH HOH . E 5 HOH A 16 616 35 HOH HOH . E 5 HOH A 17 617 23 HOH HOH . E 5 HOH A 18 618 32 HOH HOH . E 5 HOH A 19 619 21 HOH HOH . E 5 HOH A 20 620 33 HOH HOH . E 5 HOH A 21 621 11 HOH HOH . E 5 HOH A 22 622 26 HOH HOH . E 5 HOH A 23 623 1 HOH HOH . E 5 HOH A 24 624 43 HOH HOH . E 5 HOH A 25 625 16 HOH HOH . E 5 HOH A 26 626 22 HOH HOH . E 5 HOH A 27 627 42 HOH HOH . E 5 HOH A 28 628 27 HOH HOH . E 5 HOH A 29 629 28 HOH HOH . E 5 HOH A 30 630 44 HOH HOH . E 5 HOH A 31 631 15 HOH HOH . E 5 HOH A 32 632 19 HOH HOH . E 5 HOH A 33 633 20 HOH HOH . E 5 HOH A 34 634 8 HOH HOH . E 5 HOH A 35 635 29 HOH HOH . E 5 HOH A 36 636 30 HOH HOH . E 5 HOH A 37 637 41 HOH HOH . E 5 HOH A 38 638 25 HOH HOH . E 5 HOH A 39 639 36 HOH HOH . E 5 HOH A 40 640 38 HOH HOH . E 5 HOH A 41 641 10 HOH HOH . E 5 HOH A 42 642 34 HOH HOH . E 5 HOH A 43 643 31 HOH HOH . E 5 HOH A 44 644 13 HOH HOH . E 5 HOH A 45 645 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . C 3 -21.853 7.08 -15.223 1 93.75 ? C1 MYR 501 A 1 HETATM 2 O O1 MYR . . . C 3 -21.442 8.245 -15.051 1 98.44 ? O1 MYR 501 A 1 HETATM 3 O O2 MYR . . . C 3 -23.002 6.615 -14.928 1 82.06 ? O2 MYR 501 A 1 HETATM 4 C C2 MYR . . . C 3 -20.88 6.156 -15.901 1 86.13 ? C2 MYR 501 A 1 HETATM 5 C C3 MYR . . . C 3 -21.545 5.839 -17.231 1 89.7 ? C3 MYR 501 A 1 HETATM 6 C C4 MYR . . . C 3 -21.458 4.34 -17.506 1 89.54 ? C4 MYR 501 A 1 HETATM 7 C C5 MYR . . . C 3 -21.388 4.216 -18.997 1 95.51 ? C5 MYR 501 A 1 HETATM 8 C C6 MYR . . . C 3 -22.803 4.309 -19.604 1 89.6 ? C6 MYR 501 A 1 HETATM 9 C C7 MYR . . . C 3 -22.735 5.082 -20.928 1 87.15 ? C7 MYR 501 A 1 HETATM 10 C C8 MYR . . . C 3 -21.784 4.349 -21.834 1 86.67 ? C8 MYR 501 A 1 HETATM 11 C C9 MYR . . . C 3 -21.888 4.903 -23.234 1 78.66 ? C9 MYR 501 A 1 HETATM 12 C C10 MYR . . . C 3 -20.97 3.949 -23.955 1 84.11 ? C10 MYR 501 A 1 HETATM 13 C C11 MYR . . . C 3 -20.794 4.37 -25.395 1 90.07 ? C11 MYR 501 A 1 HETATM 14 C C12 MYR . . . C 3 -19.465 3.777 -25.886 1 85.73 ? C12 MYR 501 A 1 HETATM 15 C C13 MYR . . . C 3 -18.243 4.278 -25.146 1 87.89 ? C13 MYR 501 A 1 HETATM 16 C C14 MYR . . . C 3 -18.286 5.787 -24.802 1 90.42 ? C14 MYR 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 16 #