data_5GTP
#
_model_server_result.job_id            xorX7w_HqcQQG3kpNZ46Ww 
_model_server_result.datetime_utc      '2024-11-18 03:23:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gtp 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
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_entry.id    5GTP 
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_exptl.entry_id    5GTP 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5GTP 
_cell.length_a            131.31 
_cell.length_b            53.062 
_cell.length_c            53.552 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 5GTP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
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_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5GTP 
_atom_sites.fract_transf_matrix[1][1]    0.007616 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018846 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018673 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MYR A 1 501 1 MYR MRI . 
D 4 GOL A 1 502 11 GOL GRL . 
E 5 HOH A 1 601 14 HOH HOH . 
E 5 HOH A 2 602 7 HOH HOH . 
E 5 HOH A 3 603 4 HOH HOH . 
E 5 HOH A 4 604 6 HOH HOH . 
E 5 HOH A 5 605 45 HOH HOH . 
E 5 HOH A 6 606 3 HOH HOH . 
E 5 HOH A 7 607 9 HOH HOH . 
E 5 HOH A 8 608 2 HOH HOH . 
E 5 HOH A 9 609 37 HOH HOH . 
E 5 HOH A 10 610 40 HOH HOH . 
E 5 HOH A 11 611 17 HOH HOH . 
E 5 HOH A 12 612 24 HOH HOH . 
E 5 HOH A 13 613 12 HOH HOH . 
E 5 HOH A 14 614 18 HOH HOH . 
E 5 HOH A 15 615 5 HOH HOH . 
E 5 HOH A 16 616 35 HOH HOH . 
E 5 HOH A 17 617 23 HOH HOH . 
E 5 HOH A 18 618 32 HOH HOH . 
E 5 HOH A 19 619 21 HOH HOH . 
E 5 HOH A 20 620 33 HOH HOH . 
E 5 HOH A 21 621 11 HOH HOH . 
E 5 HOH A 22 622 26 HOH HOH . 
E 5 HOH A 23 623 1 HOH HOH . 
E 5 HOH A 24 624 43 HOH HOH . 
E 5 HOH A 25 625 16 HOH HOH . 
E 5 HOH A 26 626 22 HOH HOH . 
E 5 HOH A 27 627 42 HOH HOH . 
E 5 HOH A 28 628 27 HOH HOH . 
E 5 HOH A 29 629 28 HOH HOH . 
E 5 HOH A 30 630 44 HOH HOH . 
E 5 HOH A 31 631 15 HOH HOH . 
E 5 HOH A 32 632 19 HOH HOH . 
E 5 HOH A 33 633 20 HOH HOH . 
E 5 HOH A 34 634 8 HOH HOH . 
E 5 HOH A 35 635 29 HOH HOH . 
E 5 HOH A 36 636 30 HOH HOH . 
E 5 HOH A 37 637 41 HOH HOH . 
E 5 HOH A 38 638 25 HOH HOH . 
E 5 HOH A 39 639 36 HOH HOH . 
E 5 HOH A 40 640 38 HOH HOH . 
E 5 HOH A 41 641 10 HOH HOH . 
E 5 HOH A 42 642 34 HOH HOH . 
E 5 HOH A 43 643 31 HOH HOH . 
E 5 HOH A 44 644 13 HOH HOH . 
E 5 HOH A 45 645 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -19.842 8.698 -29.151 1 81.61 ? C1 GOL 502 A 1 
HETATM 2 O O1 GOL . . . D 4 -21.028 8.285 -29.843 1 88.9 ? O1 GOL 502 A 1 
HETATM 3 C C2 GOL . . . D 4 -19.984 8.164 -27.727 1 88.87 ? C2 GOL 502 A 1 
HETATM 4 O O2 GOL . . . D 4 -19.864 6.746 -27.776 1 90.62 ? O2 GOL 502 A 1 
HETATM 5 C C3 GOL . . . D 4 -18.936 8.782 -26.782 1 91.15 ? C3 GOL 502 A 1 
HETATM 6 O O3 GOL . . . D 4 -17.659 8.208 -27.034 1 97 ? O3 GOL 502 A 1 
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_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
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