data_5GUG # _model_server_result.job_id yPpFlkmmoJ5vVHydApDaEQ _model_server_result.datetime_utc '2024-10-20 08:26:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gug # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":3000}' # _entry.id 5GUG # _exptl.entry_id 5GUG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 420.096 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5GUG _cell.length_a 211.988 _cell.length_b 223.488 _cell.length_c 319.869 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GUG _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C6 H15 O15 P3' _chem_comp.formula_weight 420.096 _chem_comp.id I3P _chem_comp.mon_nstd_flag . _chem_comp.name D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 I3P sing 150 n n C1 C6 I3P sing 151 n n C1 O1 I3P sing 152 n n C1 H1 I3P sing 153 n n C2 C3 I3P sing 154 n n C2 O2 I3P sing 155 n n C2 H2 I3P sing 156 n n C3 C4 I3P sing 157 n n C3 O3 I3P sing 158 n n C3 H3 I3P sing 159 n n C4 C5 I3P sing 160 n n C4 O4 I3P sing 161 n n C4 H4 I3P sing 162 n n C5 C6 I3P sing 163 n n C5 O5 I3P sing 164 n n C5 H5 I3P sing 165 n n C6 O6 I3P sing 166 n n C6 H6 I3P sing 167 n n O1 P1 I3P sing 168 n n O2 HO2 I3P sing 169 n n O3 HO3 I3P sing 170 n n O4 P4 I3P sing 171 n n O5 P5 I3P sing 172 n n O6 HO6 I3P sing 173 n n P1 O11 I3P doub 174 n n P1 O12 I3P sing 175 n n P1 O13 I3P sing 176 n n O12 HO12 I3P sing 177 n n O13 HO13 I3P sing 178 n n P4 O41 I3P doub 179 n n P4 O42 I3P sing 180 n n P4 O43 I3P sing 181 n n O42 HO42 I3P sing 182 n n O43 HO43 I3P sing 183 n n P5 O51 I3P doub 184 n n P5 O52 I3P sing 185 n n P5 O53 I3P sing 186 n n O52 HO52 I3P sing 187 n n O53 HO53 I3P sing 188 n n # _atom_sites.entry_id 5GUG _atom_sites.fract_transf_matrix[1][1] 0.004717 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004475 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003126 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 I3P A 1 3000 3000 I3P I3P . D 2 I3P B 1 3000 3000 I3P I3P . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I3P . . . C 2 97.693 41.607 -13.454 1 172.45 ? C1 I3P 3000 A 1 HETATM 2 C C2 I3P . . . C 2 96.929 41.737 -12.101 1 172.45 ? C2 I3P 3000 A 1 HETATM 3 C C3 I3P . . . C 2 96.499 40.354 -11.609 1 172.45 ? C3 I3P 3000 A 1 HETATM 4 C C4 I3P . . . C 2 97.749 39.467 -11.422 1 172.45 ? C4 I3P 3000 A 1 HETATM 5 C C5 I3P . . . C 2 98.507 39.341 -12.758 1 172.45 ? C5 I3P 3000 A 1 HETATM 6 C C6 I3P . . . C 2 98.948 40.726 -13.273 1 172.45 ? C6 I3P 3000 A 1 HETATM 7 O O1 I3P . . . C 2 98.186 42.902 -13.981 1 172.45 ? O1 I3P 3000 A 1 HETATM 8 O O2 I3P . . . C 2 97.762 42.357 -11.111 1 172.45 ? O2 I3P 3000 A 1 HETATM 9 O O3 I3P . . . C 2 95.824 40.485 -10.376 1 172.45 ? O3 I3P 3000 A 1 HETATM 10 O O4 I3P . . . C 2 97.309 38.138 -10.937 1 172.45 ? O4 I3P 3000 A 1 HETATM 11 O O5 I3P . . . C 2 99.705 38.504 -12.547 1 172.45 ? O5 I3P 3000 A 1 HETATM 12 O O6 I3P . . . C 2 99.631 40.609 -14.518 1 172.45 ? O6 I3P 3000 A 1 HETATM 13 P P1 I3P . . . C 2 97.358 43.847 -14.96 1 172.45 ? P1 I3P 3000 A 1 HETATM 14 O O11 I3P . . . C 2 97.096 42.928 -16.066 1 172.45 ? O11 I3P 3000 A 1 HETATM 15 O O12 I3P . . . C 2 96.136 44.188 -14.185 1 172.45 ? O12 I3P 3000 A 1 HETATM 16 O O13 I3P . . . C 2 98.258 45 -15.23 1 172.45 ? O13 I3P 3000 A 1 HETATM 17 P P4 I3P . . . C 2 97.465 37.561 -9.456 1 172.45 ? P4 I3P 3000 A 1 HETATM 18 O O41 I3P . . . C 2 96.951 36.168 -9.453 1 172.45 ? O41 I3P 3000 A 1 HETATM 19 O O42 I3P . . . C 2 96.658 38.474 -8.65 1 172.45 ? O42 I3P 3000 A 1 HETATM 20 O O43 I3P . . . C 2 98.93 37.733 -9.27 1 172.45 ? O43 I3P 3000 A 1 HETATM 21 P P5 I3P . . . C 2 100.283 37.347 -13.485 1 172.45 ? P5 I3P 3000 A 1 HETATM 22 O O51 I3P . . . C 2 100.576 38.075 -14.714 1 172.45 ? O51 I3P 3000 A 1 HETATM 23 O O52 I3P . . . C 2 99.171 36.357 -13.576 1 172.45 ? O52 I3P 3000 A 1 HETATM 24 O O53 I3P . . . C 2 101.468 36.935 -12.69 1 172.45 ? O53 I3P 3000 A 1 HETATM 25 H H1 I3P . . . C 2 97.109 41.194 -14.109 1 169.06 ? H1 I3P 3000 A 1 HETATM 26 H H2 I3P . . . C 2 96.138 42.281 -12.239 1 169.06 ? H2 I3P 3000 A 1 HETATM 27 H H3 I3P . . . C 2 95.91 39.947 -12.264 1 169.06 ? H3 I3P 3000 A 1 HETATM 28 H H4 I3P . . . C 2 98.332 39.875 -10.763 1 169.06 ? H4 I3P 3000 A 1 HETATM 29 H H5 I3P . . . C 2 97.929 38.924 -13.416 1 169.06 ? H5 I3P 3000 A 1 HETATM 30 H H6 I3P . . . C 2 99.534 41.137 -12.619 1 169.06 ? H6 I3P 3000 A 1 HETATM 31 H HO2 I3P . . . C 2 97.361 43.032 -10.785 1 169.06 ? HO2 I3P 3000 A 1 HETATM 32 H HO3 I3P . . . C 2 94.988 40.546 -10.516 1 169.06 ? HO3 I3P 3000 A 1 HETATM 33 H HO6 I3P . . . C 2 100.303 41.129 -14.522 1 169.06 ? HO6 I3P 3000 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #