data_5GUG # _model_server_result.job_id '_NaGTelDGpJjw5ALtAsRoQ' _model_server_result.datetime_utc '2024-10-20 08:15:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gug # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3000}' # _entry.id 5GUG # _exptl.entry_id 5GUG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 420.096 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5GUG _cell.length_a 211.988 _cell.length_b 223.488 _cell.length_c 319.869 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GUG _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C6 H15 O15 P3' _chem_comp.formula_weight 420.096 _chem_comp.id I3P _chem_comp.mon_nstd_flag . _chem_comp.name D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 I3P sing 150 n n C1 C6 I3P sing 151 n n C1 O1 I3P sing 152 n n C1 H1 I3P sing 153 n n C2 C3 I3P sing 154 n n C2 O2 I3P sing 155 n n C2 H2 I3P sing 156 n n C3 C4 I3P sing 157 n n C3 O3 I3P sing 158 n n C3 H3 I3P sing 159 n n C4 C5 I3P sing 160 n n C4 O4 I3P sing 161 n n C4 H4 I3P sing 162 n n C5 C6 I3P sing 163 n n C5 O5 I3P sing 164 n n C5 H5 I3P sing 165 n n C6 O6 I3P sing 166 n n C6 H6 I3P sing 167 n n O1 P1 I3P sing 168 n n O2 HO2 I3P sing 169 n n O3 HO3 I3P sing 170 n n O4 P4 I3P sing 171 n n O5 P5 I3P sing 172 n n O6 HO6 I3P sing 173 n n P1 O11 I3P doub 174 n n P1 O12 I3P sing 175 n n P1 O13 I3P sing 176 n n O12 HO12 I3P sing 177 n n O13 HO13 I3P sing 178 n n P4 O41 I3P doub 179 n n P4 O42 I3P sing 180 n n P4 O43 I3P sing 181 n n O42 HO42 I3P sing 182 n n O43 HO43 I3P sing 183 n n P5 O51 I3P doub 184 n n P5 O52 I3P sing 185 n n P5 O53 I3P sing 186 n n O52 HO52 I3P sing 187 n n O53 HO53 I3P sing 188 n n # _atom_sites.entry_id 5GUG _atom_sites.fract_transf_matrix[1][1] 0.004717 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004475 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003126 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 I3P A 1 3000 3000 I3P I3P . D 2 I3P B 1 3000 3000 I3P I3P . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I3P . . . D 2 60.786 -3.934 -75.082 1 199.15 ? C1 I3P 3000 B 1 HETATM 2 C C2 I3P . . . D 2 60.642 -3.789 -76.627 1 199.15 ? C2 I3P 3000 B 1 HETATM 3 C C3 I3P . . . D 2 61.979 -3.37 -77.24 1 199.15 ? C3 I3P 3000 B 1 HETATM 4 C C4 I3P . . . D 2 63.047 -4.434 -76.912 1 199.15 ? C4 I3P 3000 B 1 HETATM 5 C C5 I3P . . . D 2 63.189 -4.583 -75.385 1 199.15 ? C5 I3P 3000 B 1 HETATM 6 C C6 I3P . . . D 2 61.85 -5.004 -74.747 1 199.15 ? C6 I3P 3000 B 1 HETATM 7 O O1 I3P . . . D 2 59.544 -4.383 -74.41 1 199.15 ? O1 I3P 3000 B 1 HETATM 8 O O2 I3P . . . D 2 60.218 -5.028 -77.211 1 199.15 ? O2 I3P 3000 B 1 HETATM 9 O O3 I3P . . . D 2 61.838 -3.257 -78.639 1 199.15 ? O3 I3P 3000 B 1 HETATM 10 O O4 I3P . . . D 2 64.329 -4.013 -77.523 1 199.15 ? O4 I3P 3000 B 1 HETATM 11 O O5 I3P . . . D 2 64.202 -5.619 -75.1 1 199.15 ? O5 I3P 3000 B 1 HETATM 12 O O6 I3P . . . D 2 61.978 -5.121 -73.332 1 199.15 ? O6 I3P 3000 B 1 HETATM 13 P P1 I3P . . . D 2 58.424 -3.403 -73.845 1 199.15 ? P1 I3P 3000 B 1 HETATM 14 O O11 I3P . . . D 2 57.965 -2.649 -75.04 1 199.15 ? O11 I3P 3000 B 1 HETATM 15 O O12 I3P . . . D 2 57.396 -4.298 -73.248 1 199.15 ? O12 I3P 3000 B 1 HETATM 16 O O13 I3P . . . D 2 59.216 -2.587 -72.926 1 199.15 ? O13 I3P 3000 B 1 HETATM 17 P P4 I3P . . . D 2 65.024 -4.638 -78.817 1 199.15 ? P4 I3P 3000 B 1 HETATM 18 O O41 I3P . . . D 2 64.061 -4.365 -79.883 1 199.15 ? O41 I3P 3000 B 1 HETATM 19 O O42 I3P . . . D 2 65.077 -6.067 -78.411 1 199.15 ? O42 I3P 3000 B 1 HETATM 20 O O43 I3P . . . D 2 66.326 -3.951 -79.016 1 199.15 ? O43 I3P 3000 B 1 HETATM 21 P P5 I3P . . . D 2 65.363 -5.594 -74.001 1 199.15 ? P5 I3P 3000 B 1 HETATM 22 O O51 I3P . . . D 2 66.173 -4.392 -74.351 1 199.15 ? O51 I3P 3000 B 1 HETATM 23 O O52 I3P . . . D 2 65.996 -6.913 -74.263 1 199.15 ? O52 I3P 3000 B 1 HETATM 24 O O53 I3P . . . D 2 64.602 -5.497 -72.761 1 199.15 ? O53 I3P 3000 B 1 HETATM 25 H H1 I3P . . . D 2 61.065 -3.083 -74.709 1 203.66 ? H1 I3P 3000 B 1 HETATM 26 H H2 I3P . . . D 2 59.982 -3.104 -76.817 1 203.66 ? H2 I3P 3000 B 1 HETATM 27 H H3 I3P . . . D 2 62.25 -2.516 -76.868 1 203.66 ? H3 I3P 3000 B 1 HETATM 28 H H4 I3P . . . D 2 62.773 -5.285 -77.289 1 203.66 ? H4 I3P 3000 B 1 HETATM 29 H H5 I3P . . . D 2 63.472 -3.736 -75.006 1 203.66 ? H5 I3P 3000 B 1 HETATM 30 H H6 I3P . . . D 2 61.573 -5.856 -75.12 1 203.66 ? H6 I3P 3000 B 1 HETATM 31 H HO2 I3P . . . D 2 59.522 -4.896 -77.68 1 203.66 ? HO2 I3P 3000 B 1 HETATM 32 H HO3 I3P . . . D 2 61.611 -2.462 -78.838 1 203.66 ? HO3 I3P 3000 B 1 HETATM 33 H HO6 I3P . . . D 2 61.558 -5.81 -73.066 1 203.66 ? HO6 I3P 3000 B 1 # _model_server_stats.io_time_ms 114 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #