data_5GUW # _model_server_result.job_id cpM99fPXiMzFJTN6o6Kj2Q _model_server_result.datetime_utc '2024-11-20 14:21:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5guw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":804}' # _entry.id 5GUW # _exptl.entry_id 5GUW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 15.999 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXYGEN ATOM' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.83 _cell.angle_gamma 90 _cell.entry_id 5GUW _cell.length_a 111.871 _cell.length_b 128.606 _cell.length_c 127.807 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GUW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,K,L,M,BA,CA 1 1 C,D,N,O,P,Q,R,S,T,U,DA,EA 2 1 E,F,V,W,X,Y,Z,AA,FA,GA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 M N N ? 9 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 61 A CYS 61 1_555 G CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? covale ? covale2 A SG CYS 64 A CYS 64 1_555 G CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? covale ? covale3 C SG CYS 61 C CYS 61 1_555 N CAB HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? covale ? covale4 C SG CYS 64 C CYS 64 1_555 N CAC HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? covale ? covale5 E SG CYS 72 M CYS 47 1_555 V CAB HEC . M HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.862 ? covale ? covale6 E SG CYS 75 M CYS 50 1_555 V CAC HEC . M HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? covale ? covale7 F SG CYS 72 N CYS 47 1_555 Y CAB HEC . N HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? covale ? covale8 F SG CYS 75 N CYS 50 1_555 Y CAC HEC . N HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? metalc ? metalc1 A NE2 HIS 65 A HIS 65 1_555 G FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc2 A O GLY 71 A GLY 71 1_555 H CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc3 A OH TYR 73 A TYR 73 1_555 H CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc4 A SD MET 112 A MET 112 1_555 G FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc5 H CA CA . A CA 202 1_555 B OE1 GLU 135 B GLU 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc6 H CA CA . A CA 202 1_555 B OE2 GLU 135 B GLU 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? metalc ? metalc7 H CA CA . A CA 202 1_555 J O2D HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc8 H CA CA . A CA 202 1_555 K O2A HEM . B HEM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc9 B NE2 HIS 60 B HIS 60 1_555 J FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc10 B ND1 HIS 207 B HIS 207 1_555 L FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc11 B OE1 GLU 211 B GLU 211 1_555 L FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc12 B OE2 GLU 211 B GLU 211 1_555 L FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc13 B NE2 HIS 258 B HIS 258 1_555 L FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc14 B NE2 HIS 259 B HIS 259 1_555 L FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc15 B NE2 HIS 347 B HIS 347 1_555 K FE HEM . B HEM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc16 B NE2 HIS 349 B HIS 349 1_555 J FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc17 K FE HEM . B HEM 802 1_555 M O O . B O 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc18 L FE FE . B FE 803 1_555 M O O . B O 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc19 C NE2 HIS 65 C HIS 65 1_555 N FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc20 C O GLY 71 C GLY 71 1_555 O CA CA . C CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc21 C OH TYR 73 C TYR 73 1_555 O CA CA . C CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc22 C SD MET 112 C MET 112 1_555 N FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc23 O CA CA . C CA 202 1_555 D OE1 GLU 135 D GLU 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc24 O CA CA . C CA 202 1_555 D OE2 GLU 135 D GLU 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? metalc ? metalc25 O CA CA . C CA 202 1_555 Q O2D HEM . D HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc26 O CA CA . C CA 202 1_555 R O1A HEM . D HEM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.096 ? metalc ? metalc27 O CA CA . C CA 202 1_555 R O2A HEM . D HEM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc28 D NE2 HIS 60 D HIS 60 1_555 Q FE HEM . D HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc29 D ND1 HIS 207 D HIS 207 1_555 S FE FE . D FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc30 D OE1 GLU 211 D GLU 211 1_555 S FE FE . D FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc31 D OE2 GLU 211 D GLU 211 1_555 S FE FE . D FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc32 D NE2 HIS 258 D HIS 258 1_555 S FE FE . D FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc33 D NE2 HIS 259 D HIS 259 1_555 S FE FE . D FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc34 D NE2 HIS 347 D HIS 347 1_555 R FE HEM . D HEM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc35 D NE2 HIS 349 D HIS 349 1_555 Q FE HEM . D HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc36 R FE HEM . D HEM 802 1_555 T O O . D O 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc37 S FE FE . D FE 803 1_555 T O O . D O 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc38 E NE2 HIS 76 M HIS 51 1_555 V FE HEC . M HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc39 E SD MET 113 M MET 88 1_555 V FE HEC . M HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc40 E NE2 HIS 207 M HIS 182 1_555 W FE DHE . M DHE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc41 F NE2 HIS 76 N HIS 51 1_555 Y FE HEC . N HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc42 F SD MET 113 N MET 88 1_555 Y FE HEC . N HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc43 F NE2 HIS 207 N HIS 182 1_555 Z FE DHE . N DHE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula O _chem_comp.formula_weight 15.999 _chem_comp.id O _chem_comp.mon_nstd_flag . _chem_comp.name 'OXYGEN ATOM' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5GUW _atom_sites.fract_transf_matrix[1][1] 0.008939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002704 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007776 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008175 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 HEC A 1 201 201 HEC HEC . H 5 CA A 1 202 805 CA CA . I 6 10M A 1 203 820 10M 10M . J 7 HEM B 1 801 801 HEM HEM . K 7 HEM B 1 802 802 HEM HEM . L 8 FE B 1 803 803 FE FE . M 9 O B 1 804 804 O O . N 4 HEC C 1 201 201 HEC HEC . O 5 CA C 1 202 805 CA CA . P 6 10M C 1 203 820 10M 10M . Q 7 HEM D 1 801 801 HEM HEM . R 7 HEM D 1 802 802 HEM HEM . S 8 FE D 1 803 803 FE FE . T 9 O D 1 804 804 O O . U 6 10M D 1 805 821 10M 10M . V 4 HEC M 1 601 544 HEC HEC . W 10 DHE M 1 602 545 DHE DHE . X 11 CL M 1 603 550 CL CL . Y 4 HEC N 1 601 544 HEC HEC . Z 10 DHE N 1 602 545 DHE DHE . AA 11 CL N 1 603 550 CL CL . BA 12 HOH A 1 301 202 HOH HOH . BA 12 HOH A 2 302 203 HOH HOH . BA 12 HOH A 3 303 204 HOH HOH . CA 12 HOH B 1 901 830 HOH HOH . CA 12 HOH B 2 902 824 HOH HOH . CA 12 HOH B 3 903 831 HOH HOH . CA 12 HOH B 4 904 825 HOH HOH . CA 12 HOH B 5 905 829 HOH HOH . CA 12 HOH B 6 906 826 HOH HOH . CA 12 HOH B 7 907 828 HOH HOH . CA 12 HOH B 8 908 822 HOH HOH . CA 12 HOH B 9 909 832 HOH HOH . CA 12 HOH B 10 910 823 HOH HOH . CA 12 HOH B 11 911 827 HOH HOH . DA 12 HOH C 1 301 203 HOH HOH . DA 12 HOH C 2 302 202 HOH HOH . DA 12 HOH C 3 303 205 HOH HOH . DA 12 HOH C 4 304 206 HOH HOH . DA 12 HOH C 5 305 204 HOH HOH . DA 12 HOH C 6 306 834 HOH HOH . EA 12 HOH D 1 901 832 HOH HOH . EA 12 HOH D 2 902 821 HOH HOH . EA 12 HOH D 3 903 835 HOH HOH . EA 12 HOH D 4 904 836 HOH HOH . EA 12 HOH D 5 905 833 HOH HOH . EA 12 HOH D 6 906 831 HOH HOH . FA 12 HOH M 1 701 555 HOH HOH . FA 12 HOH M 2 702 553 HOH HOH . FA 12 HOH M 3 703 552 HOH HOH . FA 12 HOH M 4 704 554 HOH HOH . FA 12 HOH M 5 705 551 HOH HOH . GA 12 HOH N 1 701 553 HOH HOH . GA 12 HOH N 2 702 552 HOH HOH . GA 12 HOH N 3 703 551 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol O _atom_site.label_atom_id O _atom_site.label_comp_id O _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id T _atom_site.label_entity_id 9 _atom_site.Cartn_x -63.471 _atom_site.Cartn_y 32.635 _atom_site.Cartn_z 78.951 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 11.99 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id O _atom_site.auth_comp_id O _atom_site.auth_seq_id 804 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #