data_5GUX
#
_model_server_result.job_id            D5l5h1x1vgrCM99EI30doQ 
_model_server_result.datetime_utc      '2024-11-20 16:28:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gux 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":201}' 
#
_entry.id    5GUX 
#
_exptl.entry_id    5GUX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5GUX 
_cell.length_a            89.843 
_cell.length_b            105.379 
_cell.length_c            192.577 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GUX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B 1 1 
C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      11 
_struct_asym.id                             S 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 134 L CYS 134 1_555 A SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 151 H CYS 151 1_555 B SG CYS 206 H CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
covale ? covale1 D SG CYS 61 C CYS 61 1_555 S CAB HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? 
covale ? covale2 D SG CYS 64 C CYS 64 1_555 S CAC HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? 
metalc ? metalc1 C NE2 HIS 60 B HIS 60 1_555 E FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc2 C OE1 GLU 135 B GLU 135 1_555 R CA CA . B CA 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc3 C OE2 GLU 135 B GLU 135 1_555 R CA CA . B CA 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? 
metalc ? metalc4 C ND1 HIS 207 B HIS 207 1_555 G FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc5 C OE1 GLU 211 B GLU 211 1_555 G FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc6 C OE2 GLU 211 B GLU 211 1_555 G FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc7 C NE2 HIS 258 B HIS 258 1_555 G FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc8 C NE2 HIS 259 B HIS 259 1_555 G FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc9 C NE2 HIS 347 B HIS 347 1_555 F FE HEM . B HEM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc10 C NE2 HIS 349 B HIS 349 1_555 E FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc11 E O2D HEM . B HEM 801 1_555 R CA CA . B CA 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc12 F FE HEM . B HEM 802 1_555 H O O . B O 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc13 F O2A HEM . B HEM 802 1_555 R CA CA . B CA 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc14 G FE FE . B FE 803 1_555 H O O . B O 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc15 R CA CA . B CA 814 1_555 D O GLY 71 C GLY 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc16 R CA CA . B CA 814 1_555 D OH TYR 73 C TYR 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? 
metalc ? metalc17 D NE2 HIS 65 C HIS 65 1_555 S FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc18 D SD MET 112 C MET 112 1_555 S FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 205 n n 
FE NB HEC sing 206 n n 
FE NC HEC sing 207 n n 
FE ND HEC sing 208 n n 
CHA C1A HEC doub 209 n n 
CHA C4D HEC sing 210 n n 
CHA HHA HEC sing 211 n n 
CHB C4A HEC doub 212 n n 
CHB C1B HEC sing 213 n n 
CHB HHB HEC sing 214 n n 
CHC C4B HEC doub 215 n n 
CHC C1C HEC sing 216 n n 
CHC HHC HEC sing 217 n n 
CHD C4C HEC doub 218 n n 
CHD C1D HEC sing 219 n n 
CHD HHD HEC sing 220 n n 
NA C1A HEC sing 221 n y 
NA C4A HEC sing 222 n y 
C1A C2A HEC sing 223 n y 
C2A C3A HEC doub 224 n y 
C2A CAA HEC sing 225 n n 
C3A C4A HEC sing 226 n y 
C3A CMA HEC sing 227 n n 
CMA HMA1 HEC sing 228 n n 
CMA HMA2 HEC sing 229 n n 
CMA HMA3 HEC sing 230 n n 
CAA CBA HEC sing 231 n n 
CAA HAA1 HEC sing 232 n n 
CAA HAA2 HEC sing 233 n n 
CBA CGA HEC sing 234 n n 
CBA HBA1 HEC sing 235 n n 
CBA HBA2 HEC sing 236 n n 
CGA O1A HEC doub 237 n n 
CGA O2A HEC sing 238 n n 
O2A H2A HEC sing 239 n n 
NB C1B HEC sing 240 n y 
NB C4B HEC sing 241 n y 
C1B C2B HEC doub 242 n y 
C2B C3B HEC sing 243 n y 
C2B CMB HEC sing 244 n n 
C3B C4B HEC sing 245 n y 
C3B CAB HEC doub 246 e n 
CMB HMB1 HEC sing 247 n n 
CMB HMB2 HEC sing 248 n n 
CMB HMB3 HEC sing 249 n n 
CAB CBB HEC sing 250 n n 
CAB HAB HEC sing 251 n n 
CBB HBB1 HEC sing 252 n n 
CBB HBB2 HEC sing 253 n n 
CBB HBB3 HEC sing 254 n n 
NC C1C HEC sing 255 n y 
NC C4C HEC sing 256 n y 
C1C C2C HEC doub 257 n y 
C2C C3C HEC sing 258 n y 
C2C CMC HEC sing 259 n n 
C3C C4C HEC sing 260 n y 
C3C CAC HEC doub 261 e n 
CMC HMC1 HEC sing 262 n n 
CMC HMC2 HEC sing 263 n n 
CMC HMC3 HEC sing 264 n n 
CAC CBC HEC sing 265 n n 
CAC HAC HEC sing 266 n n 
CBC HBC1 HEC sing 267 n n 
CBC HBC2 HEC sing 268 n n 
CBC HBC3 HEC sing 269 n n 
ND C1D HEC sing 270 n y 
ND C4D HEC sing 271 n y 
C1D C2D HEC doub 272 n y 
C2D C3D HEC sing 273 n y 
C2D CMD HEC sing 274 n n 
C3D C4D HEC doub 275 n y 
C3D CAD HEC sing 276 n n 
CMD HMD1 HEC sing 277 n n 
CMD HMD2 HEC sing 278 n n 
CMD HMD3 HEC sing 279 n n 
CAD CBD HEC sing 280 n n 
CAD HAD1 HEC sing 281 n n 
CAD HAD2 HEC sing 282 n n 
CBD CGD HEC sing 283 n n 
CBD HBD1 HEC sing 284 n n 
CBD HBD2 HEC sing 285 n n 
CGD O1D HEC doub 286 n n 
CGD O2D HEC sing 287 n n 
O2D H2D HEC sing 288 n n 
#
_atom_sites.entry_id                     5GUX 
_atom_sites.fract_transf_matrix[1][1]    0.011131 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00949 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005193 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 HEM B 1 801 801 HEM HEM . 
F 5 HEM B 1 802 802 HEM HEM . 
G 6 FE B 1 803 803 FE FE . 
H 7 O B 1 804 804 O O . 
I 8 XE B 1 805 811 XE XE . 
J 8 XE B 1 806 812 XE XE . 
K 8 XE B 1 807 813 XE XE . 
L 8 XE B 1 808 814 XE XE . 
M 8 XE B 1 809 815 XE XE . 
N 8 XE B 1 810 816 XE XE . 
O 8 XE B 1 811 817 XE XE . 
P 9 10M B 1 812 820 10M 10M . 
Q 9 10M B 1 813 821 10M 10M . 
R 10 CA B 1 814 805 CA CA . 
S 11 HEC C 1 201 201 HEC HEC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . S 11 34.984 1.492 22.39 1 64 ? FE HEC 201 C 1 
HETATM 2 C CHA HEC . . . S 11 32.733 -0.087 20.497 1 60.41 ? CHA HEC 201 C 1 
HETATM 3 C CHB HEC . . . S 11 35.456 -1.329 24.23 1 67.18 ? CHB HEC 201 C 1 
HETATM 4 C CHC HEC . . . S 11 37.269 3.13 24.304 1 62.27 ? CHC HEC 201 C 1 
HETATM 5 C CHD HEC . . . S 11 34.479 4.44 20.622 1 57.68 ? CHD HEC 201 C 1 
HETATM 6 N NA HEC . . . S 11 34.247 -0.373 22.371 1 62.12 ? NA HEC 201 C 1 
HETATM 7 C C1A HEC . . . S 11 33.276 -0.827 21.515 1 64.93 ? C1A HEC 201 C 1 
HETATM 8 C C2A HEC . . . S 11 32.927 -2.202 21.865 1 67.29 ? C2A HEC 201 C 1 
HETATM 9 C C3A HEC . . . S 11 33.694 -2.542 22.917 1 63.55 ? C3A HEC 201 C 1 
HETATM 10 C C4A HEC . . . S 11 34.531 -1.4 23.228 1 63.47 ? C4A HEC 201 C 1 
HETATM 11 C CMA HEC . . . S 11 33.73 -3.889 23.678 1 57.19 ? CMA HEC 201 C 1 
HETATM 12 C CAA HEC . . . S 11 31.858 -3.075 21.138 1 71.51 ? CAA HEC 201 C 1 
HETATM 13 C CBA HEC . . . S 11 30.593 -3.107 22.003 1 82.1 ? CBA HEC 201 C 1 
HETATM 14 C CGA HEC . . . S 11 29.303 -3.581 21.36 1 87.66 ? CGA HEC 201 C 1 
HETATM 15 O O1A HEC . . . S 11 29.338 -4.424 20.411 1 85.43 ? O1A HEC 201 C 1 
HETATM 16 O O2A HEC . . . S 11 28.219 -3.11 21.834 1 82.73 ? O2A HEC 201 C 1 
HETATM 17 N NB HEC . . . S 11 36.123 0.989 23.947 1 62.54 ? NB HEC 201 C 1 
HETATM 18 C C1B HEC . . . S 11 36.209 -0.231 24.559 1 64.72 ? C1B HEC 201 C 1 
HETATM 19 C C2B HEC . . . S 11 37.249 -0.176 25.575 1 67.85 ? C2B HEC 201 C 1 
HETATM 20 C C3B HEC . . . S 11 37.746 1.093 25.59 1 64.84 ? C3B HEC 201 C 1 
HETATM 21 C C4B HEC . . . S 11 37.038 1.816 24.57 1 62.44 ? C4B HEC 201 C 1 
HETATM 22 C CMB HEC . . . S 11 37.613 -1.405 26.465 1 68.36 ? CMB HEC 201 C 1 
HETATM 23 C CAB HEC . . . S 11 38.851 1.775 26.459 1 58.52 ? CAB HEC 201 C 1 
HETATM 24 C CBB HEC . . . S 11 40.292 1.291 26.158 1 58.56 ? CBB HEC 201 C 1 
HETATM 25 N NC HEC . . . S 11 35.707 3.403 22.425 1 63.21 ? NC HEC 201 C 1 
HETATM 26 C C1C HEC . . . S 11 36.648 3.866 23.333 1 66.03 ? C1C HEC 201 C 1 
HETATM 27 C C2C HEC . . . S 11 36.888 5.28 23.094 1 65.55 ? C2C HEC 201 C 1 
HETATM 28 C C3C HEC . . . S 11 36.128 5.664 22.068 1 69.51 ? C3C HEC 201 C 1 
HETATM 29 C C4C HEC . . . S 11 35.373 4.485 21.635 1 63.94 ? C4C HEC 201 C 1 
HETATM 30 C CMC HEC . . . S 11 37.859 6.189 23.863 1 57.93 ? CMC HEC 201 C 1 
HETATM 31 C CAC HEC . . . S 11 36.067 7.114 21.49 1 66.09 ? CAC HEC 201 C 1 
HETATM 32 C CBC HEC . . . S 11 37.221 7.507 20.55 1 76.97 ? CBC HEC 201 C 1 
HETATM 33 N ND HEC . . . S 11 33.808 2.079 20.848 1 59.17 ? ND HEC 201 C 1 
HETATM 34 C C1D HEC . . . S 11 33.782 3.338 20.264 1 57.96 ? C1D HEC 201 C 1 
HETATM 35 C C2D HEC . . . S 11 32.902 3.359 19.152 1 57.71 ? C2D HEC 201 C 1 
HETATM 36 C C3D HEC . . . S 11 32.331 1.957 19.112 1 61.08 ? C3D HEC 201 C 1 
HETATM 37 C C4D HEC . . . S 11 32.963 1.224 20.193 1 56.56 ? C4D HEC 201 C 1 
HETATM 38 C CMD HEC . . . S 11 32.663 4.566 18.212 1 60.86 ? CMD HEC 201 C 1 
HETATM 39 C CAD HEC . . . S 11 31.337 1.405 18.083 1 71.84 ? CAD HEC 201 C 1 
HETATM 40 C CBD HEC . . . S 11 32.205 0.539 17.195 1 63.84 ? CBD HEC 201 C 1 
HETATM 41 C CGD HEC . . . S 11 31.452 0.219 15.941 1 66.78 ? CGD HEC 201 C 1 
HETATM 42 O O1D HEC . . . S 11 31.989 0.496 14.838 1 63.39 ? O1D HEC 201 C 1 
HETATM 43 O O2D HEC . . . S 11 30.316 -0.317 16.054 1 75.28 ? O2D HEC 201 C 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           43 
#