data_5GUX
#
_model_server_result.job_id            XnLiZLN0FVdvdI3m4W9DQw 
_model_server_result.datetime_utc      '2024-11-20 16:15:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gux 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":801}' 
#
_entry.id    5GUX 
#
_exptl.entry_id    5GUX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5GUX 
_cell.length_a            89.843 
_cell.length_b            105.379 
_cell.length_c            192.577 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GUX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B 1 1 
C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 134 L CYS 134 1_555 A SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 151 H CYS 151 1_555 B SG CYS 206 H CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
covale ? covale1 D SG CYS 61 C CYS 61 1_555 S CAB HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? 
covale ? covale2 D SG CYS 64 C CYS 64 1_555 S CAC HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? 
metalc ? metalc1 C NE2 HIS 60 B HIS 60 1_555 E FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc2 C OE1 GLU 135 B GLU 135 1_555 R CA CA . B CA 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc3 C OE2 GLU 135 B GLU 135 1_555 R CA CA . B CA 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? 
metalc ? metalc4 C ND1 HIS 207 B HIS 207 1_555 G FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc5 C OE1 GLU 211 B GLU 211 1_555 G FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc6 C OE2 GLU 211 B GLU 211 1_555 G FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc7 C NE2 HIS 258 B HIS 258 1_555 G FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc8 C NE2 HIS 259 B HIS 259 1_555 G FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc9 C NE2 HIS 347 B HIS 347 1_555 F FE HEM . B HEM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc10 C NE2 HIS 349 B HIS 349 1_555 E FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc11 E O2D HEM . B HEM 801 1_555 R CA CA . B CA 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc12 F FE HEM . B HEM 802 1_555 H O O . B O 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc13 F O2A HEM . B HEM 802 1_555 R CA CA . B CA 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc14 G FE FE . B FE 803 1_555 H O O . B O 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc15 R CA CA . B CA 814 1_555 D O GLY 71 C GLY 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc16 R CA CA . B CA 814 1_555 D OH TYR 73 C TYR 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? 
metalc ? metalc17 D NE2 HIS 65 C HIS 65 1_555 S FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc18 D SD MET 112 C MET 112 1_555 S FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 289 n n 
CHA C4D HEM doub 290 n n 
CHA HHA HEM sing 291 n n 
CHB C4A HEM sing 292 n n 
CHB C1B HEM doub 293 n n 
CHB HHB HEM sing 294 n n 
CHC C4B HEM sing 295 n n 
CHC C1C HEM doub 296 n n 
CHC HHC HEM sing 297 n n 
CHD C4C HEM doub 298 n n 
CHD C1D HEM sing 299 n n 
CHD HHD HEM sing 300 n n 
C1A C2A HEM doub 301 n y 
C1A NA HEM sing 302 n y 
C2A C3A HEM sing 303 n y 
C2A CAA HEM sing 304 n n 
C3A C4A HEM doub 305 n y 
C3A CMA HEM sing 306 n n 
C4A NA HEM sing 307 n y 
CMA HMA HEM sing 308 n n 
CMA HMAA HEM sing 309 n n 
CMA HMAB HEM sing 310 n n 
CAA CBA HEM sing 311 n n 
CAA HAA HEM sing 312 n n 
CAA HAAA HEM sing 313 n n 
CBA CGA HEM sing 314 n n 
CBA HBA HEM sing 315 n n 
CBA HBAA HEM sing 316 n n 
CGA O1A HEM doub 317 n n 
CGA O2A HEM sing 318 n n 
C1B C2B HEM sing 319 n n 
C1B NB HEM sing 320 n n 
C2B C3B HEM doub 321 n n 
C2B CMB HEM sing 322 n n 
C3B C4B HEM sing 323 n n 
C3B CAB HEM sing 324 n n 
C4B NB HEM doub 325 n n 
CMB HMB HEM sing 326 n n 
CMB HMBA HEM sing 327 n n 
CMB HMBB HEM sing 328 n n 
CAB CBB HEM doub 329 n n 
CAB HAB HEM sing 330 n n 
CBB HBB HEM sing 331 n n 
CBB HBBA HEM sing 332 n n 
C1C C2C HEM sing 333 n y 
C1C NC HEM sing 334 n y 
C2C C3C HEM doub 335 n y 
C2C CMC HEM sing 336 n n 
C3C C4C HEM sing 337 n y 
C3C CAC HEM sing 338 n n 
C4C NC HEM sing 339 n y 
CMC HMC HEM sing 340 n n 
CMC HMCA HEM sing 341 n n 
CMC HMCB HEM sing 342 n n 
CAC CBC HEM doub 343 n n 
CAC HAC HEM sing 344 n n 
CBC HBC HEM sing 345 n n 
CBC HBCA HEM sing 346 n n 
C1D C2D HEM sing 347 n n 
C1D ND HEM doub 348 n n 
C2D C3D HEM doub 349 n n 
C2D CMD HEM sing 350 n n 
C3D C4D HEM sing 351 n n 
C3D CAD HEM sing 352 n n 
C4D ND HEM sing 353 n n 
CMD HMD HEM sing 354 n n 
CMD HMDA HEM sing 355 n n 
CMD HMDB HEM sing 356 n n 
CAD CBD HEM sing 357 n n 
CAD HAD HEM sing 358 n n 
CAD HADA HEM sing 359 n n 
CBD CGD HEM sing 360 n n 
CBD HBD HEM sing 361 n n 
CBD HBDA HEM sing 362 n n 
CGD O1D HEM doub 363 n n 
CGD O2D HEM sing 364 n n 
O2A H2A HEM sing 365 n n 
O2D H2D HEM sing 366 n n 
FE NA HEM sing 367 n n 
FE NB HEM sing 368 n n 
FE NC HEM sing 369 n n 
FE ND HEM sing 370 n n 
#
_atom_sites.entry_id                     5GUX 
_atom_sites.fract_transf_matrix[1][1]    0.011131 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00949 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005193 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 HEM B 1 801 801 HEM HEM . 
F 5 HEM B 1 802 802 HEM HEM . 
G 6 FE B 1 803 803 FE FE . 
H 7 O B 1 804 804 O O . 
I 8 XE B 1 805 811 XE XE . 
J 8 XE B 1 806 812 XE XE . 
K 8 XE B 1 807 813 XE XE . 
L 8 XE B 1 808 814 XE XE . 
M 8 XE B 1 809 815 XE XE . 
N 8 XE B 1 810 816 XE XE . 
O 8 XE B 1 811 817 XE XE . 
P 9 10M B 1 812 820 10M 10M . 
Q 9 10M B 1 813 821 10M 10M . 
R 10 CA B 1 814 805 CA CA . 
S 11 HEC C 1 201 201 HEC HEC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . E 5 29.302 17.32 27.032 1 73.54 ? CHA HEM 801 B 1 
HETATM 2 C CHB HEM . . . E 5 28.902 19.469 22.731 1 81.11 ? CHB HEM 801 B 1 
HETATM 3 C CHC HEM . . . E 5 28.346 23.817 24.762 1 74.99 ? CHC HEM 801 B 1 
HETATM 4 C CHD HEM . . . E 5 28.268 21.658 29.023 1 68.46 ? CHD HEM 801 B 1 
HETATM 5 C C1A HEM . . . E 5 29.233 17.456 25.655 1 71.54 ? C1A HEM 801 B 1 
HETATM 6 C C2A HEM . . . E 5 29.291 16.442 24.623 1 67.94 ? C2A HEM 801 B 1 
HETATM 7 C C3A HEM . . . E 5 29.194 17.05 23.443 1 67.88 ? C3A HEM 801 B 1 
HETATM 8 C C4A HEM . . . E 5 29.054 18.472 23.684 1 75.19 ? C4A HEM 801 B 1 
HETATM 9 C CMA HEM . . . E 5 29.215 16.505 22.011 1 62.93 ? CMA HEM 801 B 1 
HETATM 10 C CAA HEM . . . E 5 29.468 14.952 24.946 1 67.67 ? CAA HEM 801 B 1 
HETATM 11 C CBA HEM . . . E 5 28.239 14.141 24.573 1 68.25 ? CBA HEM 801 B 1 
HETATM 12 C CGA HEM . . . E 5 28.555 12.696 24.88 1 68.72 ? CGA HEM 801 B 1 
HETATM 13 O O1A HEM . . . E 5 28.044 11.827 24.122 1 71.71 ? O1A HEM 801 B 1 
HETATM 14 O O2A HEM . . . E 5 29.256 12.367 25.877 1 63.25 ? O2A HEM 801 B 1 
HETATM 15 C C1B HEM . . . E 5 28.711 20.831 22.848 1 78.01 ? C1B HEM 801 B 1 
HETATM 16 C C2B HEM . . . E 5 28.566 21.8 21.777 1 83.04 ? C2B HEM 801 B 1 
HETATM 17 C C3B HEM . . . E 5 28.402 22.962 22.424 1 84.09 ? C3B HEM 801 B 1 
HETATM 18 C C4B HEM . . . E 5 28.471 22.787 23.853 1 77.68 ? C4B HEM 801 B 1 
HETATM 19 C CMB HEM . . . E 5 28.555 21.61 20.227 1 83.32 ? CMB HEM 801 B 1 
HETATM 20 C CAB HEM . . . E 5 28.207 24.378 21.831 1 90.59 ? CAB HEM 801 B 1 
HETATM 21 C CBB HEM . . . E 5 29.104 24.781 20.916 1 96.34 ? CBB HEM 801 B 1 
HETATM 22 C C1C HEM . . . E 5 28.277 23.704 26.136 1 72.81 ? C1C HEM 801 B 1 
HETATM 23 C C2C HEM . . . E 5 28.161 24.763 27.146 1 74.46 ? C2C HEM 801 B 1 
HETATM 24 C C3C HEM . . . E 5 28.157 24.067 28.295 1 74.7 ? C3C HEM 801 B 1 
HETATM 25 C C4C HEM . . . E 5 28.219 22.638 28.074 1 70.28 ? C4C HEM 801 B 1 
HETATM 26 C CMC HEM . . . E 5 28.109 26.33 27.081 1 66.13 ? CMC HEM 801 B 1 
HETATM 27 C CAC HEM . . . E 5 28.096 24.66 29.717 1 74.39 ? CAC HEM 801 B 1 
HETATM 28 C CBC HEM . . . E 5 27.091 25.481 29.98 1 74.48 ? CBC HEM 801 B 1 
HETATM 29 C C1D HEM . . . E 5 28.513 20.315 28.846 1 68.11 ? C1D HEM 801 B 1 
HETATM 30 C C2D HEM . . . E 5 28.364 19.368 29.934 1 69.28 ? C2D HEM 801 B 1 
HETATM 31 C C3D HEM . . . E 5 28.685 17.987 29.357 1 64.42 ? C3D HEM 801 B 1 
HETATM 32 C C4D HEM . . . E 5 28.975 18.279 27.978 1 69.07 ? C4D HEM 801 B 1 
HETATM 33 C CMD HEM . . . E 5 27.99 19.702 31.407 1 70.33 ? CMD HEM 801 B 1 
HETATM 34 C CAD HEM . . . E 5 28.695 16.671 30.142 1 64.13 ? CAD HEM 801 B 1 
HETATM 35 C CBD HEM . . . E 5 27.319 16.111 29.863 1 70.51 ? CBD HEM 801 B 1 
HETATM 36 C CGD HEM . . . E 5 27.103 14.685 30.309 1 76.5 ? CGD HEM 801 B 1 
HETATM 37 O O1D HEM . . . E 5 25.964 14.32 29.914 1 78.58 ? O1D HEM 801 B 1 
HETATM 38 O O2D HEM . . . E 5 27.898 13.92 30.946 1 82.14 ? O2D HEM 801 B 1 
HETATM 39 N NA HEM . . . E 5 29.117 18.693 25.049 1 73.08 ? NA HEM 801 B 1 
HETATM 40 N NB HEM . . . E 5 28.692 21.448 24.074 1 74.69 ? NB HEM 801 B 1 
HETATM 41 N NC HEM . . . E 5 28.365 22.45 26.725 1 71.39 ? NC HEM 801 B 1 
HETATM 42 N ND HEM . . . E 5 28.857 19.632 27.706 1 67.45 ? ND HEM 801 B 1 
HETATM 43 FE FE HEM . . . E 5 28.801 20.538 25.876 1 72.97 ? FE HEM 801 B 1 
#
_model_server_stats.io_time_ms              142 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           237 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#